mRNA_L-elsbetiae_contig10962.864.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10962.864.1
Unique NamemRNA_L-elsbetiae_contig10962.864.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10962.864.1 vs. uniprot
Match: D8LFS1_ECTSI (DUF1279 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFS1_ECTSI)

HSP 1 Score: 154 bits (389), Expect = 3.280e-45
Identity = 73/94 (77.66%), Postives = 86/94 (91.49%), Query Frame = 1 
Query:    1 EYLKRFLKKYGRVAAGFHISVFLTTLGTCYTVVDYGGLDITALVKNIPILADNLPPASAGNLAVAYGMTSAIGPPRAVLTIMLTPKIAKFFAGR 282
            EYLK F+K+YGRVAA FH+SVFL TLGTCY+++DYGGLDI  LVK++PILADNLPPA AGNLA+AYGMTSAIGPPRAVLT+ +TP+IA+F AGR
Sbjct:  129 EYLKHFMKRYGRVAATFHMSVFLGTLGTCYSLIDYGGLDIAELVKDVPILADNLPPAGAGNLAIAYGMTSAIGPPRAVLTVTVTPRIARFLAGR 222
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BLAST of mRNA_L-elsbetiae_contig10962.864.1 vs. uniprot
Match: A0A024GJM7_9STRA (DUF1279 domain-containing protein n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024GJM7_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 3.560e-14
Identity = 40/92 (43.48%), Postives = 55/92 (59.78%), Query Frame = 1 
Query:    1 EYLKRFLKKYGRVAAGFHISVFLTTLGTCYTVVDYGGLDITALVKNIPILADNLPPASAGNLAVAYGMTSAIGPPRAVLTIMLTPKIAKFFA 276
            E L+  +KKYG++AA FH S+F  T G  Y V+   G+D+   +  IP++      ASAG+LA AY  T A GP R +LTI  TP +A+  A
Sbjct:    3 EQLRVVMKKYGKIAAAFHASMFAATFGASYGVIR-SGVDVETFLDRIPMVDARKVDASAGSLACAYIATLATGPARGLLTITATPMLARLLA 93
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10962.864.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LFS1_ECTSI3.280e-4577.66DUF1279 domain-containing protein n=2 Tax=Ectocarp... [more]
A0A024GJM7_9STRA3.560e-1443.48DUF1279 domain-containing protein n=2 Tax=Albugo c... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10962contigL-elsbetiae_contig10962:3524..3805 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score157.5
Seed ortholog evalue3e-36
Seed eggNOG ortholog2880.D8LFS1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Protein of unknown function (DUF1279)
EggNOG OGs2D0X6@1,2S4UH@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionDomain of unknown function DUF1279
Ec32 orthologEc-01_001150.1
Exons1
Model size282
Cds size282
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815312.8455298-CDS-L-elsbetiae_contig10962:3523..38051622815312.8455298-CDS-L-elsbetiae_contig10962:3523..3805Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10962 3524..3805 +
1691682831.7604592-CDS-L-elsbetiae_contig10962:3523..38051691682831.7604592-CDS-L-elsbetiae_contig10962:3523..3805Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10962 3524..3805 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10962.864.1prot_L-elsbetiae_contig10962.864.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10962 3524..3805 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10962.864.1

>prot_L-elsbetiae_contig10962.864.1 ID=prot_L-elsbetiae_contig10962.864.1|Name=mRNA_L-elsbetiae_contig10962.864.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=94bp
EYLKRFLKKYGRVAAGFHISVFLTTLGTCYTVVDYGGLDITALVKNIPIL
ADNLPPASAGNLAVAYGMTSAIGPPRAVLTIMLTPKIAKFFAGR
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mRNA from alignment at L-elsbetiae_contig10962:3524..3805+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10962.864.1 ID=mRNA_L-elsbetiae_contig10962.864.1|Name=mRNA_L-elsbetiae_contig10962.864.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=282bp|location=Sequence derived from alignment at L-elsbetiae_contig10962:3524..3805+ (Laminarionema elsbetiae ELsaHSoW15)
GAGTACCTCAAGCGCTTCCTCAAGAAGTATGGCCGTGTTGCAGCGGGGTT
CCACATCTCCGTGTTCCTCACTACCCTGGGCACGTGCTACACCGTCGTGG
ACTACGGGGGTTTGGACATCACGGCGCTCGTGAAGAACATACCCATCCTC
GCCGATAATTTGCCCCCCGCCAGCGCTGGTAACCTTGCCGTAGCCTACGG
AATGACGAGTGCTATTGGTCCACCTCGGGCTGTGCTGACGATAATGCTGA
CCCCAAAGATCGCCAAGTTTTTTGCCGGGCGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10962:3524..3805+

>mRNA_L-elsbetiae_contig10962.864.1 ID=mRNA_L-elsbetiae_contig10962.864.1|Name=mRNA_L-elsbetiae_contig10962.864.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=564bp|location=Sequence derived from alignment at L-elsbetiae_contig10962:3524..3805+ (Laminarionema elsbetiae ELsaHSoW15)
GAGTACCTCAAGCGCTTCCTCAAGAAGTATGGCCGTGTTGCAGCGGGGTT
CCACATCTCCGTGTTCCTCACTACCCTGGGCACGTGCTACACCGTCGTGG
ACTACGGGGGTTTGGACATCACGGCGCTCGTGAAGAACATACCCATCCTC
GCCGATAATTTGCCCCCCGCCAGCGCTGGTAACCTTGCCGTAGCCTACGG
AATGACGAGTGCTATTGGTCCACCTCGGGCTGTGCTGACGATAATGCTGA
CCCCAAAGATCGCCAAGTTTTTTGCCGGGCGCGAGTACCTCAAGCGCTTC
CTCAAGAAGTATGGCCGTGTTGCAGCGGGGTTCCACATCTCCGTGTTCCT
CACTACCCTGGGCACGTGCTACACCGTCGTGGACTACGGGGGTTTGGACA
TCACGGCGCTCGTGAAGAACATACCCATCCTCGCCGATAATTTGCCCCCC
GCCAGCGCTGGTAACCTTGCCGTAGCCTACGGAATGACGAGTGCTATTGG
TCCACCTCGGGCTGTGCTGACGATAATGCTGACCCCAAAGATCGCCAAGT
TTTTTGCCGGGCGC
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