mRNA_L-elsbetiae_contig10946.852.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10946.852.1
Unique NamemRNA_L-elsbetiae_contig10946.852.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig10946.852.1 vs. uniprot
Match: D8LMK7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMK7_ECTSI)

HSP 1 Score: 191 bits (486), Expect = 4.820e-54
Identity = 101/164 (61.59%), Postives = 117/164 (71.34%), Query Frame = 3
Query:    3 VVLALSLRRDFWDNVLSQAVMSNYEAHLSTRPEVLDPPADDMSRGGGQGRWRASLRASNVVMQWDPDHKPFTGHKTSHRVIQLGLRGDALAAFRGPAFGEGGIQDMTPFAKATYDRHQTDMGSGGA----------------LLLPAEEPYPVGNAEVAQRLGI 446
            VVLAL+LRRDFWD+VLSQAVMSNYE++ ST        + ++ RG  Q RW+ASL+AS+VVMQWDPDH PFTGHKT+HR IQLGLRGDALAAFRGPAFGE GIQD++ FAKAT + H+     G                  LLLP EE YPV +A VAQRLGI
Sbjct:   98 VVLALALRRDFWDDVLSQAVMSNYESYRSTM-------SAEVPRGDAQRRWKASLQASDVVMQWDPDHMPFTGHKTNHRAIQLGLRGDALAAFRGPAFGETGIQDVSAFAKATEEIHRPRAADGXXXXXXXXXXXXXXXXXXLLLPIEETYPVVDASVAQRLGI 254          
BLAST of mRNA_L-elsbetiae_contig10946.852.1 vs. uniprot
Match: A0A0G4EX75_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EX75_VITBC)

HSP 1 Score: 89.4 bits (220), Expect = 1.620e-16
Identity = 55/151 (36.42%), Postives = 75/151 (49.67%), Query Frame = 3
Query:    6 VLALSLRRDFWDNVLSQAVMSNYEAHLSTRPEVLDPPADDMSRGGGQGRWRASLRASNVVMQWDPDHKPFTGHKTSHRVIQLGLRGDALAAFRGPAFGEGGIQDMTPFAKATYDRHQTDMGSGGALLLPAEEPYPVGNAEVAQRLGIA*RC 458
            VLAL LRR F+D +L +AV S+Y+    TR                   W+A++  ++VVMQWDPDH PFT      R IQLG+RGD L      A G   ++D+T       +R + D+     L  P E+ YPV +  V  RL  +  C
Sbjct:   97 VLALRLRRCFFDRLLGEAVHSSYQEIYGTREA-----------------WKAAIGETSVVMQWDPDHVPFTNDTLPRRAIQLGVRGDLLREMCTDALGS--VEDVTDLVHTLDERCRNDVER---LCTPTEDVYPVADDAVRFRLLFSHAC 225          
BLAST of mRNA_L-elsbetiae_contig10946.852.1 vs. uniprot
Match: UPI0002484C7C (DUF4291 domain-containing protein n=1 Tax=Acaryochloris sp. CCMEE 5410 TaxID=310037 RepID=UPI0002484C7C)

HSP 1 Score: 87.0 bits (214), Expect = 5.800e-16
Identity = 53/149 (35.57%), Postives = 81/149 (54.36%), Query Frame = 3
Query:    3 VVLALSLRRDFWDNVLSQAVMSNYEAHLSTRPEVLDPPADDMSRGGGQGRWRASLRASNVVMQWDPDHKPFTGHKTSHRVIQLGLRGDALAAFRGPAFGEGGIQDMTPFAKATYDRHQTDMGSGGALLLPAEEPYPVGNAEVAQRLGIA 449
            V+LA+ L+R  +D++L+QAV S++++ L    E                 W+ ++ AS+V +QWDPDH P  G+K   R IQLGLR +A+  +      +  I+D++ F      R     G+  ALL PAE  YPV + EVA +L +A
Sbjct:   84 VILAIRLKRSAFDSILAQAVHSSFQSGLYESQEA----------------WQKAVHASDVRLQWDPDHNP-AGYKLERRAIQLGLRREAIRQYAQEWILD--IEDISNFV--AEQRESVISGNYEALLTPAESAYPVKDLEVATKLQLA 211          
BLAST of mRNA_L-elsbetiae_contig10946.852.1 vs. uniprot
Match: R7Q6M0_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q6M0_CHOCR)

HSP 1 Score: 87.8 bits (216), Expect = 7.860e-16
Identity = 59/147 (40.14%), Postives = 76/147 (51.70%), Query Frame = 3
Query:    6 VLALSLRRDFWDNVLSQAVMSNYEAHLSTRPEVLDPPADDMSRGGGQGRWRASLRASNVVMQWDPDHKPFTGHKTSHRVIQLGLRGDALAAFRGPAFGEGGIQDMTPFAKATYDRHQTDMGSGGALLLPAEEPYPVGNAEVAQRLGI 446
            +LA+ L R ++D +L QAV S++                D +  G +  W  +LRAS VV+QWDPDH   TG K  +RVIQLG+R  AL  FRG  FG   I D+T  AKA      T  G   A   P E+ YP+  +  A  LGI
Sbjct:  128 ILAIRLTRTYFDQLLQQAVSSSW----------------DGASYGSREEWHKALRASKVVVQWDPDHHLVTGAKLPYRVIQLGIRAGALEGFRG--FGIVSITDITTQAKAMQQDISTASGLRDAQT-PWEKRYPISGSMKAT-LGI 254          
BLAST of mRNA_L-elsbetiae_contig10946.852.1 vs. uniprot
Match: D6TXL8_9CHLR (Uncharacterized protein n=1 Tax=Ktedonobacter racemifer DSM 44963 TaxID=485913 RepID=D6TXL8_9CHLR)

HSP 1 Score: 85.9 bits (211), Expect = 1.950e-15
Identity = 62/153 (40.52%), Postives = 80/153 (52.29%), Query Frame = 3
Query:    3 VVLALSLRRDFWDNVLSQAVMSNYEAHLSTRPEVLDPPADDMSRGGGQGRWRASLRASNVVMQWDPDHKPFTGHKTSHRVIQLGLRGDALAAFRGPAFGEGGIQDMTPFAKATYDRHQTDMGSGGALLLPAEEPYPVGNAEVAQRLGIA*RCL 461
            +VLA+ L+RD +D +LSQAV S Y A L         P+D          W A LR S VV+QWDPDH P TGH+ S   IQLGLRG+ALA +         I+D++ F      R      +   L +P E  YPV +  VA RL +A + L
Sbjct:   85 IVLAVFLKRDAFDWLLSQAVHSLYHADLY--------PSDTA--------WYAQLRRSPVVLQWDPDHAP-TGHRLSRSAIQLGLRGEALAKYAREWIVA--IEDISDFV--AQQRLFVQTKAFEQLQVPYETVYPVADPVVAARLLLAQKTL 216          
BLAST of mRNA_L-elsbetiae_contig10946.852.1 vs. uniprot
Match: A0A098U3V4_9BURK (Uncharacterized protein n=1 Tax=Massilia sp. JS1662 TaxID=1519190 RepID=A0A098U3V4_9BURK)

HSP 1 Score: 85.5 bits (210), Expect = 2.040e-15
Identity = 52/147 (35.37%), Postives = 80/147 (54.42%), Query Frame = 3
Query:    6 VLALSLRRDFWDNVLSQAVMSNYEAHLSTRPEVLDPPADDMSRGGGQGRWRASLRASNVVMQWDPDHKPFTGHKTSHRVIQLGLRGDALAAFRGPAFGEGGIQDMTPFAKATYDRHQTDMGSGGALLLPAEEPYPVGNAEVAQRLGI 446
            +LA+S+RR F++ VL++AV S++ A                S    +  W+ ++ +S+V +QWDPDH PF G   + R +QLGLRG+ LA +   A    GI+D+T F +   ++H    G   AL+ P E  Y  G+   A+ LGI
Sbjct:   83 ILAISIRRTFFERVLARAVASSFVA----------------SGYSDEATWKRAIESSDVRLQWDPDHDPF-GQSVARRAVQLGLRGEILAEYGTTAIT--GIEDITEFVR---EQHGNVAGDCRALITPRERVYVPGDT-AARNLGI 206          
BLAST of mRNA_L-elsbetiae_contig10946.852.1 vs. uniprot
Match: A0A5C6ELD6_9BACT (Uncharacterized protein n=1 Tax=Rubripirellula reticaptiva TaxID=2528013 RepID=A0A5C6ELD6_9BACT)

HSP 1 Score: 84.3 bits (207), Expect = 5.920e-15
Identity = 52/148 (35.14%), Postives = 75/148 (50.68%), Query Frame = 3
Query:    3 VVLALSLRRDFWDNVLSQAVMSNYEAHLSTRPEVLDPPADDMSRGGGQGRWRASLRASNVVMQWDPDHKPFTGHKTSHRVIQLGLRGDALAAFRGPAFGEGGIQDMTPFAKATYDRHQTDMGSGGALLLPAEEPYPVGNAEVAQRLGI 446
            V+LA+ LRR F+D++L Q V S++ + L +  +                 W+A++  SNV +QWDPDH P TGHK   R IQLGLRG+ L A+      E  I +++ F      R        G L+ PAE  Y   +  +A  LG+
Sbjct:   90 VILAIRLRRTFFDSLLQQTVPSSFTSALYSDHD----------------EWKAAVGRSNVRLQWDPDHTP-TGHKCERRAIQLGLRGETLEAYGKHEALE--IINVSDFV--AEQREHIGSWKSGTLVTPAERVYVPADCNIADHLGL 216          
BLAST of mRNA_L-elsbetiae_contig10946.852.1 vs. uniprot
Match: A0A6P0XLB1_9CYAN (DUF4291 domain-containing protein n=1 Tax=Okeania sp. SIO2D1 TaxID=2607792 RepID=A0A6P0XLB1_9CYAN)

HSP 1 Score: 82.0 bits (201), Expect = 3.240e-14
Identity = 47/149 (31.54%), Postives = 77/149 (51.68%), Query Frame = 3
Query:    3 VVLALSLRRDFWDNVLSQAVMSNYEAHLSTRPEVLDPPADDMSRGGGQGRWRASLRASNVVMQWDPDHKPFTGHKTSHRVIQLGLRGDALAAFRGPAFGEGGIQDMTPFAKATYDRHQTDMGSGGALLLPAEEPYPVGNAEVAQRLGIA 449
            V+LA++++R  +D +L+ AV SN+   +    E                 W+ +L+ S V +QWDPDH P  G K   R IQLGLRG+ L  +      +  I+D+T F +  +   ++   +   L+ P E  YPV N+E+  +LG++
Sbjct:   84 VILAVTIKRTAFDEILANAVHSNFIPTIYKTQE----------------EWKKTLKRSPVRLQWDPDHNPM-GQKVERRAIQLGLRGEILRNYSRNWIVK--IEDITEFVRQQHSNKESSKWTD--LITPKENVYPVDNSEIIYKLGLS 211          
BLAST of mRNA_L-elsbetiae_contig10946.852.1 vs. uniprot
Match: A0A0G3BNW7_9BURK (Uncharacterized protein n=1 Tax=Schlegelella brevitalea TaxID=413882 RepID=A0A0G3BNW7_9BURK)

HSP 1 Score: 84.0 bits (206), Expect = 4.610e-14
Identity = 54/135 (40.00%), Postives = 72/135 (53.33%), Query Frame = 3
Query:    6 VLALSLRRDFWDNVLSQAVMSNYEAHLSTRPEVLDPPADDMSRGGGQGRWRASLRASNVVMQWDPDHKPFTGHKTSHRVIQLGLRGDALAAFRGPAFGEGGIQDMTPFAKATYDRHQTDMGSGGALLLPAEEPYP 410
            +LAL +RR+F+D +L QAV S+++A                +R   +  W  ++ AS V +QWDPDH P +G K + R +QLGLRG  LA +   A  E  + DMT F  AT   H  D  S   LL P EE YP
Sbjct:  209 ILALRVRREFFDALLEQAVPSSFDA----------------TRYASRQAWSDAVAASEVRLQWDPDHAP-SGAKLARRAVQLGLRGSVLARYAKEALVE--VVDMTGFV-ATQRPHAADDSS--ELLTPVEEVYP 321          
BLAST of mRNA_L-elsbetiae_contig10946.852.1 vs. uniprot
Match: UPI001557C50E (DUF4291 domain-containing protein n=1 Tax=Niveibacterium sp. COAC-50 TaxID=2729384 RepID=UPI001557C50E)

HSP 1 Score: 80.9 bits (198), Expect = 7.810e-14
Identity = 55/136 (40.44%), Postives = 72/136 (52.94%), Query Frame = 3
Query:    6 VLALSLRRDFWDNVLSQAVMSNYEAHLSTRPEVLDPPADDMSRGGGQGR--WRASLRASNVVMQWDPDHKPFTGHKTSHRVIQLGLRGDALAAFRGPAFGEGGIQDMTPFAKATYDRHQTDMGSGGALLLPAEEPY 407
            +LA+ LRR F+D +L QAV S+  A                  G GQ R  W+A+++AS+V +QWDPDH P +G     R +QLGLRG AL  +   A     I DMT F  +T  RH T+     ALL+P E  Y
Sbjct:   83 ILAVRLRRTFFDALLEQAVSSSLPA------------------GSGQSREDWQAAVKASDVRLQWDPDHDP-SGGPIDRRAVQLGLRGRALETYGKSAIVS--IADMTEFV-STQRRHVTEQCE--ALLMPVEHIY 194          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10946.852.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMK7_ECTSI4.820e-5461.59Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A0G4EX75_VITBC1.620e-1636.42Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
UPI0002484C7C5.800e-1635.57DUF4291 domain-containing protein n=1 Tax=Acaryoch... [more]
R7Q6M0_CHOCR7.860e-1640.14Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
D6TXL8_9CHLR1.950e-1540.52Uncharacterized protein n=1 Tax=Ktedonobacter race... [more]
A0A098U3V4_9BURK2.040e-1535.37Uncharacterized protein n=1 Tax=Massilia sp. JS166... [more]
A0A5C6ELD6_9BACT5.920e-1535.14Uncharacterized protein n=1 Tax=Rubripirellula ret... [more]
A0A6P0XLB1_9CYAN3.240e-1431.54DUF4291 domain-containing protein n=1 Tax=Okeania ... [more]
A0A0G3BNW7_9BURK4.610e-1440.00Uncharacterized protein n=1 Tax=Schlegelella brevi... [more]
UPI001557C50E7.810e-1440.44DUF4291 domain-containing protein n=1 Tax=Niveibac... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10946contigL-elsbetiae_contig10946:3461..5828 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score158.3
Seed ortholog evalue2.4e-36
Seed eggNOG ortholog2880.D8LMK7
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Domain of unknown function (DUF4291)
EggNOG OGs2A9MC@1,2RYIY@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionProtein of unknown function DUF4291
Ec32 orthologEc-05_003100.1
Exons2
Model size1499
Cds size390
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10946.852.1prot_L-elsbetiae_contig10946.852.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10946 4508..5766 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815311.864655-UTR-L-elsbetiae_contig10946:3460..45071622815311.864655-UTR-L-elsbetiae_contig10946:3460..4507Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10946 3461..4507 -
1691682831.1820686-UTR-L-elsbetiae_contig10946:3460..45071691682831.1820686-UTR-L-elsbetiae_contig10946:3460..4507Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10946 3461..4507 -
1622815311.898203-UTR-L-elsbetiae_contig10946:5766..58281622815311.898203-UTR-L-elsbetiae_contig10946:5766..5828Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10946 5767..5828 -
1691682831.2133207-UTR-L-elsbetiae_contig10946:5766..58281691682831.2133207-UTR-L-elsbetiae_contig10946:5766..5828Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10946 5767..5828 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815311.876959-CDS-L-elsbetiae_contig10946:4507..47211622815311.876959-CDS-L-elsbetiae_contig10946:4507..4721Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10946 4508..4721 -
1691682831.1934104-CDS-L-elsbetiae_contig10946:4507..47211691682831.1934104-CDS-L-elsbetiae_contig10946:4507..4721Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10946 4508..4721 -
1622815311.8887932-CDS-L-elsbetiae_contig10946:5590..57661622815311.8887932-CDS-L-elsbetiae_contig10946:5590..5766Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10946 5591..5766 -
1691682831.2038217-CDS-L-elsbetiae_contig10946:5590..57661691682831.2038217-CDS-L-elsbetiae_contig10946:5590..5766Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10946 5591..5766 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10946.852.1

>prot_L-elsbetiae_contig10946.852.1 ID=prot_L-elsbetiae_contig10946.852.1|Name=mRNA_L-elsbetiae_contig10946.852.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=130bp
MSNYEAHLSTRPEVLDPPADDMSRGGGQGRWRASLRASNVVMQWDPDHKP
FTGHKTSHRVIQLGLRGDALAAFRGPAFGEGGIQDMTPFAKATYDRHQTD
MGSGGALLLPAEEPYPVGNAEVAQRLGIA*
back to top

mRNA from alignment at L-elsbetiae_contig10946:3461..5828-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10946.852.1 ID=mRNA_L-elsbetiae_contig10946.852.1|Name=mRNA_L-elsbetiae_contig10946.852.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2368bp|location=Sequence derived from alignment at L-elsbetiae_contig10946:3461..5828- (Laminarionema elsbetiae ELsaHSoW15)
AGGTTGTGCTGGCGCTCTCCCTGAGACGAGATTTCTGGGACAACGTTCTT TCCCAAGCCGTGATGTCCAACTACGAAGCACACCTCAGCACGCGGCCCGA GGTCCTCGACCCACCTGCTGACGATATGAGTAGGGGCGGCGGACAGGGCC GCTGGAGAGCATCGCTGCGGGCGTCGAACGTTGTTATGCAATGGGATCCA GACCATAAGCCCTTCACGGGGCACAAAACAAGTCACAGGTATGTTATCGT GGTTCAGTAAGATACACGTTTTTTTACCGGAATATTCATAGGTGTACCTC CTCGGCCTTGTGTACCCTTGCCCGGTGGATCTTCGTTTGTCCTTTTCGGA CCTTCTGATGGCTCTAGTACTTCTGTGACCACGGGCCGTGAGTTGCTAGA TTTTTTGGAATTAGCAATCTCGATTCTACGAGCTTATGTGAAAAAACAAC AACAACAAAACATCTATGTATGTGCATACATACTTCGTATATACATTGGC GCACTGACATCTACGCCCTCACGCACAACGCGGAAGCCCACCCTCCACGC ACGATTTATCTACCCGTTCGATTCACGACAAACAAGGAGGCACCACAAGC AAACCACCGCCGGTGTACGCGATCTTGCACCCCGAGTGTTGTTGGCGGAA CCGTAGGTACTGTGTGGTAGATGTCAAGCAGGAATTCGCTCTCATAGCCC CAGTCCGACTTCGTAGGACGTGTGCGAATAGGGACAGAATGAGGCTCTGT TTTGAACCGTTAGCTTCGTAGCATTTCGCGGGGTTCACACAAGGTGTTGA CAATTTCGGCCTCGTAGTCTACAGCTGCCGCTCAATCACTGGCTAGGCCA TACGTCCCGTCAAAGGTGAATATGATCTGCTATTCCGCACCGACACATTC AAACGATCGGGCACGTTTCCACAGGTTGCTTGCTGCATAGGGTGCTTTGC CTTGGACATACGACCTAGTTGTCGGAATCAACCTAGCGTGCCGTGAAGGC ATCGAAATCAAACAACAGCAGCAGAGCAAGCGAACCACTACCTCCACAAA TCACTGCAAGGAGCAACGTTCCCGCCTTAATTATCTCACTTTTCCTTGGC CCTGAAGGGTGATCCAACTGGGGCTACGAGGCGACGCGCTGGCTGCCTTC CGAGGCCCAGCGTTCGGGGAGGGGGGCATCCAAGATATGACCCCCTTTGC TAAAGCAACGTACGACAGACATCAGACCGACATGGGGAGCGGCGGAGCTC TGCTCCTGCCTGCCGAAGAGCCGTATCCTGTGGGGAATGCCGAAGTGGCA CAGAGGCTGGGAATCGCCTAGCGGTGCCTGCGGCTCTCCACAAAGATGCA AGAACCAGCAGATACTACGTCTCTTTGCAGGAGGCCCATGCATAAAGCTC GACTGGAGTAGACCAAGGTCTGCCAGGTGCATTCCATCGTCCGGGTCGTG AGTGAGACATGTGCTCTGGTGCAGCTTCCTAGTAGCTTAGATATAACAGT CGTCATACCAGGGTATTTCTAGCACGCTCGCCGCTGAAGGGGGGGGGGGG GATGGGCTTGGCGGCGCCGGGATGACACAGGCGATCCCTTGATGATTATT CGATACACGGTCGCACGTTGCAGCCTTCAGCTGCGTGTGTCTGGAGAAGC ATGACGAGGCATCGACCGAGAGGCTATTTGCAAGGTATTGTTCTGTGAGG TGTGTTTTCGTTCACGAACGCTGTCACCACTCAAGAGCGCGGCGTATTTA TTATATCTTGATGGGGAGACGCAATTTGCAAAACATGCCTGGCACGGTTG ATAGCCCGCACTATACTGCTGTACACTTCAGCGTAGGTGGCTGATAGGGC GAGGGTCTACAAGGCGGCGAGAGGCTGCGGCTCACGCCGAATAAGCGTGT AAACCCCCTCTTGAATCCAAGGGTTTCCTTGGAAGCGAAACTCTGGCTCA TAGAGGACCGGAGCAGCAATGGTTTTTTGACAAATTTTATCAAAGGAGGC CACTTGGGAACCGCTCGGGGGTGAAGGTCCCTCAAAGTCAACATTTTACG TGGTATTTCGTCTGTGTTTTCGTGATATGCATGTATGTATGCAGACGCCC ACAGATCGGTACTTCTCCGGGTCTGTGCGTCCTGGGTCTAGCCGATCAGC GGACACTTCCTGCAAAACGACGTGTGCTTAAGATTGGTGTTGTTTTGTTT TGGGGGCACGGAAAAGGCTTGTGTCGACTATTGAGTACCTGGTGAGTTTT GGTAGTTGGCCACATGATAAATGGCCCACGACTGGTTGTCGTCGCTGCCA TTATATTGTTGACTGGCTCTCTTCGCGCTCTTATTTGGAGTAAATTTCAA ACTATTGCTTACAAAGCG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig10946:3461..5828-

>mRNA_L-elsbetiae_contig10946.852.1 ID=mRNA_L-elsbetiae_contig10946.852.1|Name=mRNA_L-elsbetiae_contig10946.852.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=780bp|location=Sequence derived from alignment at L-elsbetiae_contig10946:3461..5828- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCCAACTACGAAGCACACCTCAGCACGCGGCCCGAGGTCCTCGACCC
ACCTGCTGACGATATGAGTAGGGGCGGCGGACAGGGCCGCTGGAGAGCAT
CGCTGCGGGCGTCGAACGTTGTTATGCAATGGGATCCAGACCATAAGCCC
TTCACGGGGCACAAAACAAGTCACAGATGTCCAACTACGAAGCACACCTC
AGCACGCGGCCCGAGGTCCTCGACCCACCTGCTGACGATATGAGTAGGGG
CGGCGGACAGGGCCGCTGGAGAGCATCGCTGCGGGCGTCGAACGTTGTTA
TGCAATGGGATCCAGACCATAAGCCCTTCACGGGGCACAAAACAAGTCAC
AGGGTGATCCAACTGGGGCTACGAGGCGACGCGCTGGCTGCCTTCCGAGG
CCCAGCGTTCGGGGAGGGGGGCATCCAAGATATGACCCCCTTTGCTAAAG
CAACGTACGACAGACATCAGACCGACATGGGGAGCGGCGGAGCTCTGCTC
CTGCCTGCCGAAGAGCCGTATCCTGTGGGGAATGCCGAAGTGGCACAGAG
GCTGGGAATCGCCTAGGGTGATCCAACTGGGGCTACGAGGCGACGCGCTG
GCTGCCTTCCGAGGCCCAGCGTTCGGGGAGGGGGGCATCCAAGATATGAC
CCCCTTTGCTAAAGCAACGTACGACAGACATCAGACCGACATGGGGAGCG
GCGGAGCTCTGCTCCTGCCTGCCGAAGAGCCGTATCCTGTGGGGAATGCC
GAAGTGGCACAGAGGCTGGGAATCGCCTAG
back to top