mRNA_L-elsbetiae_contig10942.849.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10942.849.1
Unique NamemRNA_L-elsbetiae_contig10942.849.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10942.849.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10942contigL-elsbetiae_contig10942:2391..2971 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size581
Cds size393
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10942.849.1prot_L-elsbetiae_contig10942.849.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10942 2502..2894 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815311.7046075-UTR-L-elsbetiae_contig10942:2390..25011622815311.7046075-UTR-L-elsbetiae_contig10942:2390..2501Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10942 2391..2501 +
1691682831.102418-UTR-L-elsbetiae_contig10942:2390..25011691682831.102418-UTR-L-elsbetiae_contig10942:2390..2501Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10942 2391..2501 +
1622815311.7353206-UTR-L-elsbetiae_contig10942:2894..29711622815311.7353206-UTR-L-elsbetiae_contig10942:2894..2971Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10942 2895..2971 +
1691682831.1299005-UTR-L-elsbetiae_contig10942:2894..29711691682831.1299005-UTR-L-elsbetiae_contig10942:2894..2971Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10942 2895..2971 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815311.7212193-CDS-L-elsbetiae_contig10942:2501..28941622815311.7212193-CDS-L-elsbetiae_contig10942:2501..2894Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10942 2502..2894 +
1691682831.1144876-CDS-L-elsbetiae_contig10942:2501..28941691682831.1144876-CDS-L-elsbetiae_contig10942:2501..2894Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10942 2502..2894 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10942.849.1

>prot_L-elsbetiae_contig10942.849.1 ID=prot_L-elsbetiae_contig10942.849.1|Name=mRNA_L-elsbetiae_contig10942.849.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=131bp
MYGKGSGRGMLESAAAPTLAQLGWVPPLLLMLWYVSCLLLTVGLPAQTTL
VFARKRNVCLSFLLGTHEARRISEVLSSATFKPGGLFTCGPSEKKRCASG
LAFLIALVLVYGLFFCVVRPSLSILYRYNV*
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mRNA from alignment at L-elsbetiae_contig10942:2391..2971+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10942.849.1 ID=mRNA_L-elsbetiae_contig10942.849.1|Name=mRNA_L-elsbetiae_contig10942.849.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=581bp|location=Sequence derived from alignment at L-elsbetiae_contig10942:2391..2971+ (Laminarionema elsbetiae ELsaHSoW15)
ACCTATCTTCGTGTGTTTGGTTTGGTGATGGCTGCGCTGATATAGCGATG
TCTTTTTTTCTGATTTTTTTTTCGTGTCGGTCTTGCCTCTCTGTGGGCTT
TTCCCGGCGCCATGTACGGTAAGGGCAGCGGTCGTGGTATGTTGGAAAGT
GCAGCAGCACCAACATTAGCGCAGCTGGGTTGGGTTCCGCCGCTGCTGCT
GATGCTGTGGTATGTATCTTGTCTTCTTCTCACGGTCGGTCTTCCAGCGC
AAACGACCCTTGTTTTTGCTAGAAAACGCAACGTGTGTCTGTCCTTCCTC
TTAGGTACACATGAAGCTCGAAGAATAAGCGAAGTGTTATCATCGGCAAC
GTTTAAACCTGGTGGATTATTTACATGTGGGCCCTCGGAGAAGAAGCGAT
GTGCGTCCGGGCTTGCTTTTCTGATCGCGTTGGTTTTGGTGTATGGATTG
TTTTTTTGTGTCGTTCGTCCGTCCCTCTCTATTTTGTATCGTTATAATGT
GTAGAGAGATGAGAAGAAGCGGGGCACGAAGGGGAGAGACAAAGAGACAG
GGCTATTGTTATTTTTATGAGAAGAATGAGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10942:2391..2971+

>mRNA_L-elsbetiae_contig10942.849.1 ID=mRNA_L-elsbetiae_contig10942.849.1|Name=mRNA_L-elsbetiae_contig10942.849.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=786bp|location=Sequence derived from alignment at L-elsbetiae_contig10942:2391..2971+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTACGGTAAGGGCAGCGGTCGTGGTATGTTGGAAAGTGCAGCAGCACC
AACATTAGCGCAGCTGGGTTGGGTTCCGCCGCTGCTGCTGATGCTGTGGT
ATGTATCTTGTCTTCTTCTCACGGTCGGTCTTCCAGCGCAAACGACCCTT
GTTTTTGCTAGAAAACGCAACGTGTGTCTGTCCTTCCTCTTAGGTACACA
TGAAGCTCGAAGAATAAGCGAAGTGTTATCATCGGCAACGTTTAAACCTG
GTGGATTATTTACATGTGGGCCCTCGGAGAAGAAGCGATGTGCGTCCGGG
CTTGCTTTTCTGATCGCGTTGGTTTTGGTGTATGGATTGTTTTTTTGTGT
CGTTCGTCCGTCCCTCTCTATTTTGTATCGTTATAATGTGTAGATGTACG
GTAAGGGCAGCGGTCGTGGTATGTTGGAAAGTGCAGCAGCACCAACATTA
GCGCAGCTGGGTTGGGTTCCGCCGCTGCTGCTGATGCTGTGGTATGTATC
TTGTCTTCTTCTCACGGTCGGTCTTCCAGCGCAAACGACCCTTGTTTTTG
CTAGAAAACGCAACGTGTGTCTGTCCTTCCTCTTAGGTACACATGAAGCT
CGAAGAATAAGCGAAGTGTTATCATCGGCAACGTTTAAACCTGGTGGATT
ATTTACATGTGGGCCCTCGGAGAAGAAGCGATGTGCGTCCGGGCTTGCTT
TTCTGATCGCGTTGGTTTTGGTGTATGGATTGTTTTTTTGTGTCGTTCGT
CCGTCCCTCTCTATTTTGTATCGTTATAATGTGTAG
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