mRNA_L-elsbetiae_contig1093.843.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1093.843.1
Unique NamemRNA_L-elsbetiae_contig1093.843.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig1093.843.1 vs. uniprot
Match: D7FGS9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FGS9_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 1.040e-20
Identity = 110/233 (47.21%), Postives = 129/233 (55.36%), Query Frame = 1 
Query:   37 MSKWWRKVQEVLPKPSSLKKTASKNVSFMQKY------------------DIGKRSAQLRQQARERAEEAASRLAG----SARVLPSKAAEXXXXXXXXXXXAGFTXXXXXXXXXXXXXXEAGKRATNMVSDAAPKIGSYASWTGRRMALLLLGTAFVYGVGSSLPGAVARYYTEKDRHRSRDEEQTRRGEGGGGKPFSSATAVAEKGGGEAEVFERSWSLLPGAIAALLGKR 669
            MS WWRK+Q+ LPKPSSLKKTA  N+SF++K                   +  K+SA   + AR+RAE+A SR+      SAR +PSKAA XXXXXXXXXXX    XXXXXXXXXXXXXX                         RR+ LLLLGTAF+YGVGS LPGAVARY+TEKDR R  +  +   G  G   P SSA A+   G    E   +  SL    I   L KR
Sbjct:   23 MSHWWRKIQQTLPKPSSLKKTARGNLSFLEKKYGEVAAGKDAKDVRNAVRNTVKKSASYGKSARDRAEDATSRVGKQFVESARSIPSKAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARRIVLLLLGTAFLYGVGSGLPGAVARYFTEKDRRRYEEGRRKSLGADGESSPSSSARAMDLDGTAVVEAAGQISSLFVVEIERWLRKR 255
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1093.843.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FGS9_ECTSI1.040e-2047.21Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1093contigL-elsbetiae_contig1093:19610..22663 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-04_001010.1
Exons2
Model size1480
Cds size636
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1093.843.1prot_L-elsbetiae_contig1093.843.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1093 19646..21855 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815311.1649072-UTR-L-elsbetiae_contig1093:19609..196451622815311.1649072-UTR-L-elsbetiae_contig1093:19609..19645Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1093 19610..19645 +
1691682830.8145587-UTR-L-elsbetiae_contig1093:19609..196451691682830.8145587-UTR-L-elsbetiae_contig1093:19609..19645Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1093 19610..19645 +
1622815311.1983335-UTR-L-elsbetiae_contig1093:21855..226631622815311.1983335-UTR-L-elsbetiae_contig1093:21855..22663Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1093 21856..22663 +
1691682830.8391237-UTR-L-elsbetiae_contig1093:21855..226631691682830.8391237-UTR-L-elsbetiae_contig1093:21855..22663Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1093 21856..22663 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815311.1789095-CDS-L-elsbetiae_contig1093:19645..198521622815311.1789095-CDS-L-elsbetiae_contig1093:19645..19852Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1093 19646..19852 +
1691682830.8229291-CDS-L-elsbetiae_contig1093:19645..198521691682830.8229291-CDS-L-elsbetiae_contig1093:19645..19852Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1093 19646..19852 +
1622815311.188871-CDS-L-elsbetiae_contig1093:21426..218551622815311.188871-CDS-L-elsbetiae_contig1093:21426..21855Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1093 21427..21855 +
1691682830.8308713-CDS-L-elsbetiae_contig1093:21426..218551691682830.8308713-CDS-L-elsbetiae_contig1093:21426..21855Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1093 21427..21855 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1093.843.1

>prot_L-elsbetiae_contig1093.843.1 ID=prot_L-elsbetiae_contig1093.843.1|Name=mRNA_L-elsbetiae_contig1093.843.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=212bp
MSKWWRKVQEVLPKPSSLKKTASKNVSFMQKYDIGKRSAQLRQQARERAE
EAASRLAGSARVLPSKAAEAAKDAAKDAAAAGFTASKMAASAGAQSAREA
GKRATNMVSDAAPKIGSYASWTGRRMALLLLGTAFVYGVGSSLPGAVARY
YTEKDRHRSRDEEQTRRGEGGGGKPFSSATAVAEKGGGEAEVFERSWSLL
PGAIAALLGKR*
back to top

mRNA from alignment at L-elsbetiae_contig1093:19610..22663+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1093.843.1 ID=mRNA_L-elsbetiae_contig1093.843.1|Name=mRNA_L-elsbetiae_contig1093.843.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3054bp|location=Sequence derived from alignment at L-elsbetiae_contig1093:19610..22663+ (Laminarionema elsbetiae ELsaHSoW15)
CCCACACGTGCGTGTGCACACGTGCACAGAGAAGTTATGTCAAAGTGGTG
GCGCAAAGTTCAGGAGGTCCTTCCGAAGCCAAGCTCTCTGAAGAAAACTG
CCAGCAAAAACGTATCCTTTATGCAGAAGTACGATATCGGCAAGCGTAGT
GCGCAGCTGCGGCAGCAGGCACGGGAGCGGGCTGAAGAAGCCGCGTCGAG
GTTGGCGGGGAGTGCGAGAGTGCTGCCTTCGAAGGCTGCGGAGGTGAGAA
AGAGGCTGGAGAGGGGGAGAGAGGAAGTTTCCATTACATACCCCACTCGC
GCCGAAACACACACACGGCAGCATGCGACTTTCTGGTGATTGAATTGCCC
GAAAAAGCACGCCGTCCTTGGGCAGTGCTCGCCAGTTCCAGGATGTCGAT
AGCCAAAATCACTCTCTCCGCTGCCTTACCGTCCGCCAACGAACACAACG
CGCTGGATGATGTACTTGCGATAGCTCTCTCTATTATCTGTCTAGCAACC
CATGGTTCGTGACATTTGACTCACAATGACCCAAGAACTCGTCCGAAACT
CGTCGGAAAGACACCACGGGCCTAATAAATAGATAAATAGGCTGGCGCCC
GGTGTGCCGTGCAACCACAAGTGCCGGTGGTGTGATTTGCAACTGAGCAC
AACAACTCATTGCAGTCAGGAGGGACAATTTGCTAAAAACAAAAACACCA
TTTGCGCGCAGGCAGCATGCTTATGGTCCACACTACTTGTAGATGCTGCA
GAGAAGTTCACAAAGTGCTGCGCAACCGCAAAAACCTCCTCCAACAGATA
TCCGTGCCTCCCTATAAAAAACGTTTGCAGGAAGACAAGCATGCTGCCTG
CACGCAAACAACATTTTACCAGGAAAATCGTCCGTCCTAACTGCTGCTGT
ATGCAGTTCGACTCGCCACTACTGCCGGTACTACGTCCCCACGGTACATT
CAGTCTGCATTCCAAATTTCGTAGCCATTTGTTTTGTCTGTGAGCATCCT
CGTCATCGGCTCATAATCACGCGGAGGCTAAGAGGTTACCCCGTACAAAA
ACCCTAGCCTGTTTTGTTTTTGTCCACGGCGAGCAGCACTACTCTGTTGG
ACGAAAGCAAAATTGTTTTGTATACAGTTCGCCACGGAGTCCGTCTCTTG
TGGGGAGGTTCTTTCGTTGATTTGCTGGTTTATTTTCAAAAACATTTGAT
TAGTTCGATCGCCGAGCGGGGTCTACCCCATCCTATGTACCACTAAACTC
GTTCATACTCAAGTACGATGTTCACCCTCCTGAAATCAAGCCTAAGGCGG
GCAACGCTGCGCTTCGAACGAGGTAAAGGTGGGAAGGAATCCAGAACCGA
TTATCAGCGGAATACGCTACATATGGCGGCGAGTGTATGTAGACTATATA
ATCGTGTGAATCCGCCGGGGGGGCGACAGCTAAGAGGAAAACATGTCGCA
ATATGGTCCGAAAGCAAACATCTTCTGGTGTATTCGGCACCACAGACCCG
AATCTCCTGAACTACAGGTTTGGAACAGCACCGTCATATGTAGCTCATAT
CAGGGGCTCCCTCGGGTGACTCGTATGAGGGTCGGTGGCGGCGAGTACGA
CGATAAAAGGCGCGTCTGAGCACATGCGTACTTCCTACTTCCTACTCACT
CCGGCCTGCGCTATCTCCGCCCCAGCCGCAGAAAGATCTGAGCGAGCCAG
CACACGCCACCTCGACCAAGGAAGGCCTTGCGTGGGACAGCAGTTGATCA
ACCCCCTCTCAAACACTTCTGCCCCTTTGTGTGTGTGTGTGTGTGTGTTT
CCTCGTCAATCCTGCAGGCGGCCAAGGACGCGGCGAAAGACGCCGCGGCG
GCCGGGTTCACAGCCTCGAAAATGGCCGCCTCTGCAGGCGCACAGTCTGC
CCGCGAGGCCGGCAAGCGCGCCACCAACATGGTTTCTGACGCTGCGCCAA
AGATTGGGTCTTATGCCTCCTGGACTGGACGGCGGATGGCCTTGCTGCTT
CTGGGAACGGCCTTTGTGTATGGGGTCGGGTCGTCCCTGCCCGGGGCTGT
AGCGCGGTACTACACGGAGAAGGACCGACATCGAAGTCGAGATGAGGAGC
AGACGAGAAGGGGCGAGGGCGGTGGGGGCAAGCCATTTTCGTCGGCGACA
GCTGTAGCCGAAAAGGGCGGGGGGGAGGCAGAGGTGTTTGAGAGGTCATG
GTCGTTACTGCCGGGGGCGATAGCAGCGCTGCTAGGGAAACGATGACAGG
CGTGAGTAGAGGGCGAGCAATATGGACCCCGGTTCCGCCTGAAGTATCTG
TCCAGCTGTCGACCGCCCATCGACTCTTGCCCTTACTCCTTGCTTACGAA
GAGCACAGACTACGACTACAACAGTCGTCAATTCTCTGCATCATTCCTTT
GGGATTCTCTGTAGTCTGTATGTAGATATTCCTCATTTATTGTTGGCACT
GCTGTCATTGTCCTGGATAGATAAAACGTTTGGCTGTTGAAACAAAATGG
CTTTATTTGTGCCTTCATGGAGGGTTTTGGTTAGGTTGGGTTTCTTTTAC
CAACCGCGATTTCGGGTGGACATAAAAGTTAGTCTAGTAGTTAAACTTGT
AGGCACCCTCTTATGTAGGTGGCTCGGCATTCGTTGTTGCTGAGTACCGT
GGAAATCTAGGTATGTTGTAGGCAAGGAATGTTTGTGCGGCAAGGCTGAT
GGCCCTATAGTTGCGCTCAGCAACGGCATTCGGTAGATACTACCGGGCAC
CCTCCGAAAGAAATTGCGTCTATTCGAAGGTCAGGTGGCGGACTGGCTCT
CTGCGCCTTTGAAAACCGTGTAGACTACCATTCTACGCCTTTGTGACGTC
AAATATTTGTGCATGAACTCTGTATCTACTTTGGTCTAGTTTTTCCCGTG
GCACAGGCGCCTTTCAAGGTAGCAAACTCTCCGACGTAAGCCCTGATGGT
GATTTACAGCCATTCTCACACATGTGACCCCGGTTGGGTCGTCTAGCTAG
AGTAGAAGTGGAGGATGGGGGCCAGAGGGGCAGACGACAAAATCCAATAA
TAGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1093:19610..22663+

>mRNA_L-elsbetiae_contig1093.843.1 ID=mRNA_L-elsbetiae_contig1093.843.1|Name=mRNA_L-elsbetiae_contig1093.843.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1272bp|location=Sequence derived from alignment at L-elsbetiae_contig1093:19610..22663+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCAAAGTGGTGGCGCAAAGTTCAGGAGGTCCTTCCGAAGCCAAGCTC
TCTGAAGAAAACTGCCAGCAAAAACGTATCCTTTATGCAGAAGTACGATA
TCGGCAAGCGTAGTGCGCAGCTGCGGCAGCAGGCACGGGAGCGGGCTGAA
GAAGCCGCGTCGAGGTTGGCGGGGAGTGCGAGAGTGCTGCCTTCGAAGGC
TGCGGAGATGTCAAAGTGGTGGCGCAAAGTTCAGGAGGTCCTTCCGAAGC
CAAGCTCTCTGAAGAAAACTGCCAGCAAAAACGTATCCTTTATGCAGAAG
TACGATATCGGCAAGCGTAGTGCGCAGCTGCGGCAGCAGGCACGGGAGCG
GGCTGAAGAAGCCGCGTCGAGGTTGGCGGGGAGTGCGAGAGTGCTGCCTT
CGAAGGCTGCGGAGGCGGCCAAGGACGCGGCGAAAGACGCCGCGGCGGCC
GGGTTCACAGCCTCGAAAATGGCCGCCTCTGCAGGCGCACAGTCTGCCCG
CGAGGCCGGCAAGCGCGCCACCAACATGGTTTCTGACGCTGCGCCAAAGA
TTGGGTCTTATGCCTCCTGGACTGGACGGCGGATGGCCTTGCTGCTTCTG
GGAACGGCCTTTGTGTATGGGGTCGGGTCGTCCCTGCCCGGGGCTGTAGC
GCGGTACTACACGGAGAAGGACCGACATCGAAGTCGAGATGAGGAGCAGA
CGAGAAGGGGCGAGGGCGGTGGGGGCAAGCCATTTTCGTCGGCGACAGCT
GTAGCCGAAAAGGGCGGGGGGGAGGCAGAGGTGTTTGAGAGGTCATGGTC
GTTACTGCCGGGGGCGATAGCAGCGCTGCTAGGGAAACGATGAGCGGCCA
AGGACGCGGCGAAAGACGCCGCGGCGGCCGGGTTCACAGCCTCGAAAATG
GCCGCCTCTGCAGGCGCACAGTCTGCCCGCGAGGCCGGCAAGCGCGCCAC
CAACATGGTTTCTGACGCTGCGCCAAAGATTGGGTCTTATGCCTCCTGGA
CTGGACGGCGGATGGCCTTGCTGCTTCTGGGAACGGCCTTTGTGTATGGG
GTCGGGTCGTCCCTGCCCGGGGCTGTAGCGCGGTACTACACGGAGAAGGA
CCGACATCGAAGTCGAGATGAGGAGCAGACGAGAAGGGGCGAGGGCGGTG
GGGGCAAGCCATTTTCGTCGGCGACAGCTGTAGCCGAAAAGGGCGGGGGG
GAGGCAGAGGTGTTTGAGAGGTCATGGTCGTTACTGCCGGGGGCGATAGC
AGCGCTGCTAGGGAAACGATGA
back to top