prot_L-elsbetiae_contig1093.843.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1093.843.1
Unique Nameprot_L-elsbetiae_contig1093.843.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length212
Homology
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BLAST of mRNA_L-elsbetiae_contig1093.843.1 vs. uniprot
Match: D7FGS9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FGS9_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 1.980e-22
Identity = 110/233 (47.21%), Postives = 129/233 (55.36%), Query Frame = 0 
Query:    1 MSKWWRKVQEVLPKPSSLKKTASKNVSFMQKY------------------DIGKRSAQLRQQARERAEEAASRLAG----SARVLPSKAAEXXXXXXXXXXXAGFTXXXXXXXXXXXXXXEAGKRATNMVSDAAPKIGSYASWTGRRMALLLLGTAFVYGVGSSLPGAVARYYTEKDRHRSRDEEQTRRGEGGGGKPFSSATAVAEKGGGEAEVFERSWSLLPGAIAALLGKR 211
            MS WWRK+Q+ LPKPSSLKKTA  N+SF++K                   +  K+SA   + AR+RAE+A SR+      SAR +PSKAA XXXXXXXXXXX    XXXXXXXXXXXXXX                         RR+ LLLLGTAF+YGVGS LPGAVARY+TEKDR R  +  +   G  G   P SSA A+   G    E   +  SL    I   L KR
Sbjct:   23 MSHWWRKIQQTLPKPSSLKKTARGNLSFLEKKYGEVAAGKDAKDVRNAVRNTVKKSASYGKSARDRAEDATSRVGKQFVESARSIPSKAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARRIVLLLLGTAFLYGVGSGLPGAVARYFTEKDRRRYEEGRRKSLGADGESSPSSSARAMDLDGTAVVEAAGQISSLFVVEIERWLRKR 255
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1093.843.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FGS9_ECTSI1.980e-2247.21Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 152..211
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 127..151
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..126
NoneNo IPR availableTMHMMTMhelixcoord: 126..148

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1093contigL-elsbetiae_contig1093:19646..21855 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1093.843.1mRNA_L-elsbetiae_contig1093.843.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1093 19610..22663 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1093.843.1 ID=prot_L-elsbetiae_contig1093.843.1|Name=mRNA_L-elsbetiae_contig1093.843.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=212bp
MSKWWRKVQEVLPKPSSLKKTASKNVSFMQKYDIGKRSAQLRQQARERAE
EAASRLAGSARVLPSKAAEAAKDAAKDAAAAGFTASKMAASAGAQSAREA
GKRATNMVSDAAPKIGSYASWTGRRMALLLLGTAFVYGVGSSLPGAVARY
YTEKDRHRSRDEEQTRRGEGGGGKPFSSATAVAEKGGGEAEVFERSWSLL
PGAIAALLGKR*
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