mRNA_L-elsbetiae_contig1092.837.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1092.837.1 vs. uniprot
Match: D7G0L4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0L4_ECTSI) HSP 1 Score: 612 bits (1579), Expect = 3.760e-215 Identity = 321/458 (70.09%), Postives = 352/458 (76.86%), Query Frame = 1 Query: 1 MGASASTLYDQGGSWGLRFVPTCDLMEQVHVCLVPSEREFLLACLDEIHRRCDSLINGKKQAAIFHEQGAVEALLEMLGMFKLDEVFLRQAVRTLIPLCGQDAMILDHFLDLGGRVALDETLEMHKDDQKIREDGRTLTSTIHRHAKGDAKRDATRVSMACSRYCPTCRPLVDCPDFLGPAGNRLSADPAQQCLRPALGKRLVYRGTNGMG--MDDFCRRDAAEGHDDEEMDPVEADLVRIQRLLEHMEKFPKILDVVEPCVDALIAVGKSAMTEAVLESKCVFKLIKAMKTFPETRSLQWKGLLAITHLAKRDAVCFDLGKAGAVQLLVKMWPEWEDDEMRQLLLWAMNEVARLETNQLRMSAERVGFMLRETMEPAPARLAVTGAMVTAEQAGHYCVPVKLKRLYRDRKLGSPFAKREED--RETLQKVA-VGVPMAKAQFGKAGDGWKEGEGGLV 1359 MGASASTLY QGGSWGL+FVPT DLMEQVH CLVPSER+FLLACLDE+H RCDSL++G+KQ A FHEQGAVEALLEMLGMFKLDEVFLRQAVRTLIPLCGQD +LDHFLDLGGRVALDETL MH DD + YC CRPLVDCPD LGPAGNRLS+D Q+CL+ GKRLVYRG++G G +DD E D+ DP DLVRI+RL+EHMEKFPK LDVVEPCVDALIAVGKSA T+AVLES CVFKL+KAMKTF TRSLQWKGLLAI H AK+D VCFDLGKAG + LLV MWP+W+DDEMRQLLLWA NE LRMS ERVG +LRE MEPAPARLAVTGAMVTAEQ GHYCVPVKLKRLYR+RKLGSPFAK +E+ RE + A + P+ KAQFGKAGDGWKEGE GL+ Sbjct: 1 MGASASTLYTQGGSWGLKFVPTYDLMEQVHTCLVPSERDFLLACLDEMHCRCDSLLHGRKQVAAFHEQGAVEALLEMLGMFKLDEVFLRQAVRTLIPLCGQDDAVLDHFLDLGGRVALDETLGMHTDDHHM--------------------------------YCSACRPLVDCPDLLGPAGNRLSSDSVQRCLQRGAGKRLVYRGSSGNGPIVDDV------EDEDENAADPTSDDLVRIRRLVEHMEKFPKTLDVVEPCVDALIAVGKSAATQAVLESTCVFKLVKAMKTFANTRSLQWKGLLAIIHFAKKDEVCFDLGKAGVIPLLVAMWPQWDDDEMRQLLLWAFNE--------LRMSVERVGALLREAMEPAPARLAVTGAMVTAEQVGHYCVPVKLKRLYRERKLGSPFAKGDEEANRENEKNAAALARPLTKAQFGKAGDGWKEGEHGLL 412
BLAST of mRNA_L-elsbetiae_contig1092.837.1 vs. uniprot
Match: A0A835YWK4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWK4_9STRA) HSP 1 Score: 141 bits (355), Expect = 4.520e-32 Identity = 100/322 (31.06%), Postives = 145/322 (45.03%), Query Frame = 1 Query: 682 EMDPVEADLVRIQRLLEHMEKFPKILDVVEPCVDALIAVGKSAMTEAVLESKCVFKLIKAMKTFPETRSLQWKGLLAITHLAKRDAVCFDLG-------------------------------------------------------KAGAVQLLVKMWPEWE-DDEMRQLLLWAMNEVARLETNQLRMSAERVGFMLRETMEPAPA---RLAVTGAMVTAEQ-----------------AG----------------HYCVPVKLKRLYRDRKLGSPFAKRE----EDRETLQKVAVGVPMAKAQFGKAGDGWKEGEGGLV 1359 E DPV ++ RI+R++ H++K+P + V +PCVDA IA+GK ++ AV S C+ L+ AM+ F R++ WKGLLA+ HLA+ D +C DL KAG V +L+++W W+ D+E+RQL+L+A+ ++ LE NQLR RV LR E P A G V +Q AG YC+P+ LKR Y D+ LGSPFAK + E Q + ++G+AG+ WK+G+ GLV Sbjct: 262 EGDPVPGEMRRIERVMRHLKKYPTVAVVADPCVDAFIALGKGSIPAAVAGSGCLPLLVNAMEAFASDRAIVWKGLLAVAHLARNDEMCSDLDMMCNNQLAVDAYNGLWVHPLQALAFASAVHRSEVRDSHVHYRPSAHAQDCCHSARKAGVVPMLMQLWESWKSDEEIRQLVLFALGPISTLEQNQLRCRNCRVAAALRPVFELDPVIAGESASAGPNVMLKQLQEVLRCRLPPPLCPMRAGASAAPPANTPPTPPPHRYCIPLALKRAYLDKALGSPFAKEDGGSAEQHTENQAQVARMYALPPKYGRAGESWKDGQQGLV 583
BLAST of mRNA_L-elsbetiae_contig1092.837.1 vs. uniprot
Match: A0A6H5K411_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K411_9PHAE) HSP 1 Score: 82.4 bits (202), Expect = 3.750e-15 Identity = 44/79 (55.70%), Postives = 50/79 (63.29%), Query Frame = 1 Query: 1423 PEQSWGKCLKDGFKAFD--------------IPSADWATAAKVEEGRTWHKGVLRGAERLMASWHKKKEEASRQRAIKR 1617 PEQ+W CLKD K F+ IP DW AAKVE G WH GVL+GAERLMASWHK +++ SRQRAIKR Sbjct: 12 PEQNWLICLKDDLKMFEARHGSTPDKRSFFGIPKPDWDEAAKVEGGVPWHAGVLQGAERLMASWHKGEDKDSRQRAIKR 90
BLAST of mRNA_L-elsbetiae_contig1092.837.1 vs. uniprot
Match: A0A6H5JVZ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVZ8_9PHAE) HSP 1 Score: 82.0 bits (201), Expect = 4.350e-15 Identity = 43/79 (54.43%), Postives = 50/79 (63.29%), Query Frame = 1 Query: 1423 PEQSWGKCLKDGFKAFD--------------IPSADWATAAKVEEGRTWHKGVLRGAERLMASWHKKKEEASRQRAIKR 1617 PEQ+W CLKD K F+ IP DW AAKVE G WH G+L+GA+R MASWHK +E+ASRQRAIKR Sbjct: 16 PEQNWLICLKDDLKVFEARHGSTPDKRSFFGIPKPDWDEAAKVEGGVPWHAGMLQGAKRFMASWHKGEEKASRQRAIKR 94
BLAST of mRNA_L-elsbetiae_contig1092.837.1 vs. uniprot
Match: A0A6H5KF72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF72_9PHAE) HSP 1 Score: 84.3 bits (207), Expect = 6.200e-15 Identity = 45/79 (56.96%), Postives = 50/79 (63.29%), Query Frame = 1 Query: 1423 PEQSWGKCLKDGFKAFD--------------IPSADWATAAKVEEGRTWHKGVLRGAERLMASWHKKKEEASRQRAIKR 1617 PEQ+W CLKD K F+ IP DW AAKVE G WH GVL+GAER MASWHK +E+ASRQRAIKR Sbjct: 94 PEQNWLICLKDDLKMFEARHGSTPDKRSFFGIPKPDWDEAAKVEGGVPWHAGVLQGAERFMASWHKGEEKASRQRAIKR 172
BLAST of mRNA_L-elsbetiae_contig1092.837.1 vs. uniprot
Match: A0A6H5JWS4_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWS4_9PHAE) HSP 1 Score: 85.1 bits (209), Expect = 3.130e-14 Identity = 44/80 (55.00%), Postives = 51/80 (63.75%), Query Frame = 1 Query: 1420 HPEQSWGKCLKDGFKAFD--------------IPSADWATAAKVEEGRTWHKGVLRGAERLMASWHKKKEEASRQRAIKR 1617 +PEQ+W CLKD K F+ +P W+ AAKVE G WH GVL+GAER MASWHK KEEA+RQRAIKR Sbjct: 231 NPEQNWLTCLKDDMKMFEARYGSTTDKPSVFGVPKLVWSEAAKVEGGVPWHAGVLQGAERFMASWHKGKEEANRQRAIKR 310
BLAST of mRNA_L-elsbetiae_contig1092.837.1 vs. uniprot
Match: A0A6H5JMY1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMY1_9PHAE) HSP 1 Score: 80.9 bits (198), Expect = 3.280e-14 Identity = 43/79 (54.43%), Postives = 49/79 (62.03%), Query Frame = 1 Query: 1423 PEQSWGKCLKDGFKAFD--------------IPSADWATAAKVEEGRTWHKGVLRGAERLMASWHKKKEEASRQRAIKR 1617 PEQ+W CLKD K F+ IP DW A +VE G WH GVL+GAER MASWHK +E+ASRQRAIKR Sbjct: 46 PEQNWLICLKDDLKMFEARHGSTPDKRSFFGIPKPDWDDAEEVEGGVPWHAGVLQGAERFMASWHKGEEKASRQRAIKR 124
BLAST of mRNA_L-elsbetiae_contig1092.837.1 vs. uniprot
Match: A0A6H5K9G5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9G5_9PHAE) HSP 1 Score: 86.3 bits (212), Expect = 5.630e-14 Identity = 45/80 (56.25%), Postives = 51/80 (63.75%), Query Frame = 1 Query: 1420 HPEQSWGKCLKDGFKAFD--------------IPSADWATAAKVEEGRTWHKGVLRGAERLMASWHKKKEEASRQRAIKR 1617 +PEQ+W CLKD K F+ +P W+ AAKVE G WH GVL+GAER MASWHK KEEASRQRAIKR Sbjct: 537 NPEQNWLTCLKDDMKMFEARYGSTTDKPSVFGVPKLVWSEAAKVEGGVPWHAGVLQGAERFMASWHKGKEEASRQRAIKR 616
BLAST of mRNA_L-elsbetiae_contig1092.837.1 vs. uniprot
Match: A0A6H5JEX7_9PHAE (Reverse transcriptase domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX7_9PHAE) HSP 1 Score: 86.3 bits (212), Expect = 6.710e-14 Identity = 45/80 (56.25%), Postives = 51/80 (63.75%), Query Frame = 1 Query: 1420 HPEQSWGKCLKDGFKAFD--------------IPSADWATAAKVEEGRTWHKGVLRGAERLMASWHKKKEEASRQRAIKR 1617 +PEQ+W CLKD K F+ +P W+ AAKVE G WH GVL+GAER MASWHK KEEASRQRAIKR Sbjct: 682 NPEQNWLTCLKDDMKMFEARYGSTTDKPSVFGVPKLVWSEAAKVEGGVPWHAGVLQGAERFMASWHKGKEEASRQRAIKR 761
BLAST of mRNA_L-elsbetiae_contig1092.837.1 vs. uniprot
Match: A0A6H5KX41_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX41_9PHAE) HSP 1 Score: 86.3 bits (212), Expect = 7.960e-14 Identity = 45/80 (56.25%), Postives = 51/80 (63.75%), Query Frame = 1 Query: 1420 HPEQSWGKCLKDGFKAFD--------------IPSADWATAAKVEEGRTWHKGVLRGAERLMASWHKKKEEASRQRAIKR 1617 +PEQ+W CLKD K F+ +P W+ AAKVE G WH GVL+GAER MASWHK KEEASRQRAIKR Sbjct: 955 NPEQNWLTCLKDDMKMFEARYGSTTDKPSVFGVPKLVWSEAAKVEGGVPWHAGVLQGAERFMASWHKGKEEASRQRAIKR 1034 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1092.837.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1092.837.1 >prot_L-elsbetiae_contig1092.837.1 ID=prot_L-elsbetiae_contig1092.837.1|Name=mRNA_L-elsbetiae_contig1092.837.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=454bp MGASASTLYDQGGSWGLRFVPTCDLMEQVHVCLVPSEREFLLACLDEIHRback to top mRNA from alignment at L-elsbetiae_contig1092:11345..20389- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1092.837.1 ID=mRNA_L-elsbetiae_contig1092.837.1|Name=mRNA_L-elsbetiae_contig1092.837.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=9045bp|location=Sequence derived from alignment at L-elsbetiae_contig1092:11345..20389- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1092:11345..20389- >mRNA_L-elsbetiae_contig1092.837.1 ID=mRNA_L-elsbetiae_contig1092.837.1|Name=mRNA_L-elsbetiae_contig1092.837.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2724bp|location=Sequence derived from alignment at L-elsbetiae_contig1092:11345..20389- (Laminarionema elsbetiae ELsaHSoW15)back to top |