mRNA_L-elsbetiae_contig109.820.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig109.820.1 vs. uniprot
Match: D8LLY0_ECTSI (WD-40 repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLY0_ECTSI) HSP 1 Score: 624 bits (1609), Expect = 1.630e-201 Identity = 346/535 (64.67%), Postives = 381/535 (71.21%), Query Frame = 1 Query: 10 GGWGADGAGPP-SALAYDSEEERIGALAPKTDAEVLMEQRKQKAQKMIAKKPGTTLNPRKRYERHKEERLHEKQKAAIAAAAALEAAKEAEETRRMVLEELRSWDAYELNTRNHARMIEQA-QDRQAAAQRLHQEQEHRLACEEEGLTFDHGVAVRHRRWRASPALATVLPAHPCPAHAMRQSADGRWILSGGDDLTVRLWDTEAFARKLADTKNERRAAKAATLAGAVAANLALGWECACELVGHTSAVRDVEFNPLFVGPPKDQVETMDGGGEKGGGGEAAPVRLECMLASASADLTVRIWDLSFNPRTARFILRGHKGVVYTCRFAPSGDRLASCSADGTVLMWNVLN-----------------------------------------------------------------------------------------------------EFRERLKIPQTVLDQCDASPCPSQAVSNGFSLTVTILNDFGRDTRTEEYYRGCKLILRARSLKKFTGLYVAGVSAEGLWEGFE 1305 GGWG GAGPP SALAYDSEEER+ ALAPKTDAE+LME+RK KAQKM+AKKPGTTLNPRKRYE+ +EERL+E+Q +LE AKE EE +RM+LEELRSWDAYELNTRNH RMIEQ +DR AAA +L + +E RLACEEEGLTF+HGV V HRRWRAS ALATVLPAHPCP HAMRQS++GRWILSGGDDLTVRLWDTEAFARKL+D KNE+RAAKAA AGAVAA+LALGWECA ELVGHT+AVRDVEFNPLF GPP+DQ + + G E G G E APVRL C+LASAS DLTVRIWDLSFNPR ARF L+GHKGVV CRFAPSGDRLASCSADGT+ +WNVLN E+RE LKIP+TVL QCDASPCP+QAVSNGFSLTVTILND G+DTRTEEYYRGCKL+LRAR+LKKFTGLYVAGVSAEGLWEGFE Sbjct: 33 GGWGT-GAGPPNSALAYDSEEERMKALAPKTDAEILMEERKLKAQKMLAKKPGTTLNPRKRYEQRQEERLYERQXXXXXXXXSLEVAKETEENKRMLLEELRSWDAYELNTRNHNRMIEQEREDRAAAANKLKESEERRLACEEEGLTFNHGVVVCHRRWRASSALATVLPAHPCPVHAMRQSSNGRWILSGGDDLTVRLWDTEAFARKLSDPKNEKRAAKAAARAGAVAADLALGWECARELVGHTAAVRDVEFNPLFGGPPEDQEDAQEEG-EGGPGSEGAPVRLACVLASASTDLTVRIWDLSFNPRVARFALKGHKGVVSACRFAPSGDRLASCSADGTIRLWNVLNGTNVFCYEXXXXXXXXXXXXXXXXXXXXXXDIGERAIRVWFADMPLYDRDPVQFGLRLRWTRSGLIKRVRANTESSAMGFFLSRQEDRESRESSDESEGEKEYRELLKIPKTVLTQCDASPCPTQAVSNGFSLTVTILNDSGKDTRTEEYYRGCKLVLRARALKKFTGLYVAGVSAEGLWEGFE 565
BLAST of mRNA_L-elsbetiae_contig109.820.1 vs. uniprot
Match: A0A836CAF5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAF5_9STRA) HSP 1 Score: 128 bits (322), Expect = 4.390e-28 Identity = 95/293 (32.42%), Postives = 140/293 (47.78%), Query Frame = 1 Query: 190 YERHKEERLHEKQKAAIAAAAALEAAKEAEETRRMVLEELRSWDAYELNTRNHARMIEQA-QDRQAAAQRLHQEQEHRLACEEEGLTFDHGVAVRHRRWRASPALATVLPAHPCPAHAMRQSADGRWILSGGDDLTVRLWDTEAFARKLADTKNERRAAKAATLAGAVAANLALGWECACELVGHTSAVRDVEFNPLFVGPPKDQVETMDGGGEKGGGGEAAPVRLECMLASASADLTVRIWDLSFNPRTARFILRGHK-GVVYTCRFAPSGDRLASCSADGTVLMWNVLNEF 1062 Y+R K E + A+ A+ A+EA E ++M+ EE R+WDAYELN RN+AR++ A ++++ +EEG+ F++G+AV +RRW+ SP L T L AH P A+ S+ R+I S D V+LWD + D + + L+ AL W+C L GHT AV DV F P F + + G+ P RL+ + +A V +WDLS + R R L H V F+ G RL + DG V +W+V + Sbjct: 64 YQRTKARARLELEAVAVQRRKAISDAREALERQKMLAEEKRTWDAYELNARNYARLVRLAHEEKEXXXXXXXXXXXXXXLQQEEGILFENGIAVGNRRWKNSPELKTALHAHTEPVLAIAVSSCLRYIASASADHCVKLWDMKPRETGCGDAVSAAPQSTKTELS-------ALNWDCVAVLAGHTRAVHDVAFAPHFSLHHRPRGAAAYRYGD--------PPRLDHTVVTAGGCGRVLVWDLSISARRPRHALDAHPHAVARAIAFSRDGARLVTGGGDGAVRLWDVAGGY 341
BLAST of mRNA_L-elsbetiae_contig109.820.1 vs. uniprot
Match: UPI000B8CF034 (transcriptional corepressor LEUNIG-like isoform X1 n=5 Tax=Carica papaya TaxID=3649 RepID=UPI000B8CF034) HSP 1 Score: 62.4 bits (150), Expect = 1.140e-6 Identity = 60/204 (29.41%), Postives = 94/204 (46.08%), Query Frame = 1 Query: 550 SADGRWILSGGDDLTVRLWDTEAFARK---------LADTKNERRAAKAATLAGAVAANLALGWE------CACE-------LVGHTSAVRDVEFNPLFVGPPKDQVETMDGGGE------KGGG------GEAAPVRLECMLA---SASADLTVRIWDLSFNPRTARFILRGHKGVVYTCRFAPSGDRLASCSADGTVLMWNV 1050 S+DG+ + +GG D V LW TE+FA K + D + + + LA + A W+ CA + GH++AV ++F+P +D + + D E K G G A +R + L +A+AD + I D+ + RF L+GHKG+V++ + PSG+ LAS S D V +W V Sbjct: 590 SSDGKLLATGGHDKKVVLWSTESFAIKSTLEEHGQWITDVRFNPSSPSMSRLATSSADKTVRVWDVDNTHLCASQPGYSLRTFTGHSTAVMSLDFHPS----KEDLICSCDNNNEIRYWSIKNGSCAGVFKGGATQIRFQPRLGRIIAAAADNFISILDVE--TQVCRFKLQGHKGLVHSICWDPSGEYLASVS-DDLVKVWTV 786
BLAST of mRNA_L-elsbetiae_contig109.820.1 vs. uniprot
Match: A0A7S1XYL7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XYL7_9STRA) HSP 1 Score: 62.0 bits (149), Expect = 1.260e-6 Identity = 42/109 (38.53%), Postives = 53/109 (48.62%), Query Frame = 1 Query: 874 LASASADLTVRIWDLSF-----------NPRTARFILRGHKGVVYTCRFAPSGDRLASCSADGTVLMWNVLNEFRERLKIPQTVLDQCDASPCPSQAVSNGFSLTVTIL 1167 LASAS D TVRIWDL+ + +L H+G VY R+AP G LASC+ADG V++W++ K P L A+ A S FS TIL Sbjct: 65 LASASYDRTVRIWDLAALDSVCDADGGADAAAQLRVLDAHEGAVYAVRYAPDGAVLASCAADGKVMVWDMRARGAVAAKRPVRALGAA-AAGVSDAAFSLSFSPRGTIL 172
BLAST of mRNA_L-elsbetiae_contig109.820.1 vs. uniprot
Match: S3C4T4_OPHP1 (Wd repeat-containing protein n=1 Tax=Ophiostoma piceae (strain UAMH 11346) TaxID=1262450 RepID=S3C4T4_OPHP1) HSP 1 Score: 60.8 bits (146), Expect = 2.700e-6 Identity = 28/59 (47.46%), Postives = 38/59 (64.41%), Query Frame = 1 Query: 871 MLASASADLTVRIWDLSFNPRTARFILRGHKGVVYTCRFAPSGDRLASCSADGTVLMWN 1047 +LA+ S D T RIWD T +F L+ H+G V ++P G RLASCS DGTV++W+ Sbjct: 169 LLATGSGDCTARIWDTETG--TPKFTLKKHRGWVLAVAWSPDGARLASCSMDGTVIVWD 225
BLAST of mRNA_L-elsbetiae_contig109.820.1 vs. uniprot
Match: A0A091DG61_FUKDA (Apoptotic protease-activating factor 1 n=1 Tax=Fukomys damarensis TaxID=885580 RepID=A0A091DG61_FUKDA) HSP 1 Score: 61.2 bits (147), Expect = 2.830e-6 Identity = 34/81 (41.98%), Postives = 50/81 (61.73%), Query Frame = 1 Query: 871 MLASASADLTVRIWDLSFNPRTARFILRGHKGVVYTCRFAPSGDRLASCSADGTVLMWNV--LNEFRERLKIPQTVLDQCD 1107 +LA+AS D +++WDL N + R + GH V CRF+P + LASCSADGT+ +W+V NE R+ + + Q L+ D Sbjct: 614 LLATASNDFFLKLWDL--NQKECRNTMFGHTNSVNHCRFSPDDEVLASCSADGTLKLWDVRSANE-RKSINVKQFFLNSED 691
BLAST of mRNA_L-elsbetiae_contig109.820.1 vs. uniprot
Match: F7CG66_ORNAN (WD repeat, SAM and U-box domain-containing protein 1 n=5 Tax=Monotremata TaxID=9255 RepID=F7CG66_ORNAN) HSP 1 Score: 59.7 bits (143), Expect = 5.810e-6 Identity = 27/62 (43.55%), Postives = 38/62 (61.29%), Query Frame = 1 Query: 871 MLASASADLTVRIWDLSFNPRTARFILRGHKGVVYTCRFAPSGDRLASCSADGTVLMWNVLN 1056 +LA+ S D T+R++ L L+GH V+ CRF+PSG LASCS DGT ++W+ N Sbjct: 24 LLATCSLDKTIRLYSLGDFAELPHSPLKGHTYAVHCCRFSPSGHILASCSTDGTTVLWSSQN 85
BLAST of mRNA_L-elsbetiae_contig109.820.1 vs. uniprot
Match: G1NUZ8_MYOLU (WD repeat, SAM and U-box domain-containing protein 1 n=6 Tax=Vespertilionidae TaxID=9431 RepID=G1NUZ8_MYOLU) HSP 1 Score: 59.3 bits (142), Expect = 7.720e-6 Identity = 28/62 (45.16%), Postives = 38/62 (61.29%), Query Frame = 1 Query: 871 MLASASADLTVRIWDLSFNPRTARFILRGHKGVVYTCRFAPSGDRLASCSADGTVLMWNVLN 1056 +LA+ S D T+R++ LS A L+ H V+ C F+PSG LASCS DGT ++WN N Sbjct: 24 LLATCSLDKTIRLYSLSDFTELAHSPLKFHTYAVHCCCFSPSGHILASCSTDGTTVLWNTQN 85
BLAST of mRNA_L-elsbetiae_contig109.820.1 vs. uniprot
Match: A0A7L0N6H7_9PASS (WD repeat, SAM and U-box domain-containing protein 1 (Fragment) n=2 Tax=Formicariidae TaxID=81882 RepID=A0A7L0N6H7_9PASS) HSP 1 Score: 59.3 bits (142), Expect = 7.720e-6 Identity = 35/81 (43.21%), Postives = 44/81 (54.32%), Query Frame = 1 Query: 874 LASASADLTVRIWDLSFNPRTARFILRGHKGVVYTCRFAPSGDRLASCSADGTVLMWNVLNEFRERLKIPQTVLDQCDASP 1116 LA+ S D TVR++ LS LRGH V+ C F+PSG LASCS DGT ++W+ + R VL Q ASP Sbjct: 25 LATCSLDKTVRVYSLSNFAELPYSPLRGHTYAVHCCCFSPSGGVLASCSTDGTAVLWDTRDGRR------LAVLGQPHASP 99
BLAST of mRNA_L-elsbetiae_contig109.820.1 vs. uniprot
Match: UPI001C2E7D13 (apoptotic protease-activating factor 1 isoform X2 n=1 Tax=Peromyscus maniculatus bairdii TaxID=230844 RepID=UPI001C2E7D13) HSP 1 Score: 59.7 bits (143), Expect = 8.080e-6 Identity = 27/62 (43.55%), Postives = 40/62 (64.52%), Query Frame = 1 Query: 865 ECMLASASADLTVRIWDLSFNPRTARFILRGHKGVVYTCRFAPSGDRLASCSADGTVLMWNV 1050 + +LA+ S D +++WDL N + R + GH V CRF+P + LASCSADGT+ +W+V Sbjct: 713 QLLLATGSNDFFLKLWDL--NQKECRNTMFGHTNSVIHCRFSPDDELLASCSADGTLKLWDV 772 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig109.820.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig109.820.1 >prot_L-elsbetiae_contig109.820.1 ID=prot_L-elsbetiae_contig109.820.1|Name=mRNA_L-elsbetiae_contig109.820.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=440bp EGSGGWGADGAGPPSALAYDSEEERIGALAPKTDAEVLMEQRKQKAQKMIback to top mRNA from alignment at L-elsbetiae_contig109:16959..22555+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig109.820.1 ID=mRNA_L-elsbetiae_contig109.820.1|Name=mRNA_L-elsbetiae_contig109.820.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5597bp|location=Sequence derived from alignment at L-elsbetiae_contig109:16959..22555+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig109:16959..22555+ >mRNA_L-elsbetiae_contig109.820.1 ID=mRNA_L-elsbetiae_contig109.820.1|Name=mRNA_L-elsbetiae_contig109.820.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2640bp|location=Sequence derived from alignment at L-elsbetiae_contig109:16959..22555+ (Laminarionema elsbetiae ELsaHSoW15)back to top |