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Homology
BLAST of mRNA_L-elsbetiae_contig10878.801.1 vs. uniprot
Match: A0A6H5JWR3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWR3_9PHAE) HSP 1 Score: 245 bits (625), Expect = 1.020e-74 Identity = 120/146 (82.19%), Postives = 132/146 (90.41%), Query Frame = 1
Query: 1 RVAFRLVNLVFATVFLASAALQYNDEGGVAWAALYFVAAVFCILSELSWRHLRTFLVLPTLWVFTIGSVIGAAYVLIALLLMGDPGEGASGEDAMDFYGLVLVSFWMSTVLILDRHNVVGVFRGYTSLTEHERDREGHVQMGEVIL 438
RV FRL+NL FA VFL+SA LQYND+ G+AWAALYF+AAVFCILSELSWRHLRTFLVLPTLW+FT+ S IGA YVLIA LL+G GASGEDAMDFYGL+LVSFWMS VL+LDRHNVVGVFRGYTSLTEHERDREGHVQMGEV++
Sbjct: 67 RVTFRLINLGFAAVFLSSAILQYNDDDGIAWAALYFMAAVFCILSELSWRHLRTFLVLPTLWMFTLCSWIGAGYVLIAQLLVGHAEGGASGEDAMDFYGLLLVSFWMSIVLLLDRHNVVGVFRGYTSLTEHERDREGHVQMGEVVI 212
BLAST of mRNA_L-elsbetiae_contig10878.801.1 vs. uniprot
Match: D7FJF2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJF2_ECTSI) HSP 1 Score: 191 bits (485), Expect = 2.480e-55 Identity = 95/114 (83.33%), Postives = 101/114 (88.60%), Query Frame = 1
Query: 97 ALYFVAAVFCILSELSWRHLRTFLVLPTLWVFTIGSVIGAAYVLIALLLMGDPGEGASGEDAMDFYGLVLVSFWMSTVLILDRHNVVGVFRGYTSLTEHERDREGHVQMGEVIL 438
A Y AAVFCILSELSWR LRTF VLPTLWVFT+ S IGAAYVLIA LL+G GASGEDAMDFYGL+LVSFWMS VL+LDRHNVVGVFRGYTSLTEHERDREGHVQMGEV++
Sbjct: 5 ARYDAAAVFCILSELSWRQLRTFFVLPTLWVFTLCSWIGAAYVLIAQLLVGHAEGGASGEDAMDFYGLLLVSFWMSIVLLLDRHNVVGVFRGYTSLTEHERDREGHVQMGEVVI 118
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | signal peptide |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-14_006120.1 |
| Exons | 4 |
| Model size | 1648 |
| Cds size | 441 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815305.4489934-UTR-L-elsbetiae_contig10878:2431..3638 | 1622815305.4489934-UTR-L-elsbetiae_contig10878:2431..3638 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig10878 2432..3638 - |
| 1691682828.392783-UTR-L-elsbetiae_contig10878:2431..3638 | 1691682828.392783-UTR-L-elsbetiae_contig10878:2431..3638 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig10878 2432..3638 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815305.4602292-CDS-L-elsbetiae_contig10878:3638..3735 | 1622815305.4602292-CDS-L-elsbetiae_contig10878:3638..3735 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10878 3639..3735 - |
| 1691682828.4043486-CDS-L-elsbetiae_contig10878:3638..3735 | 1691682828.4043486-CDS-L-elsbetiae_contig10878:3638..3735 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10878 3639..3735 - |
| 1622815305.469092-CDS-L-elsbetiae_contig10878:4324..4457 | 1622815305.469092-CDS-L-elsbetiae_contig10878:4324..4457 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10878 4325..4457 - |
| 1691682828.4125438-CDS-L-elsbetiae_contig10878:4324..4457 | 1691682828.4125438-CDS-L-elsbetiae_contig10878:4324..4457 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10878 4325..4457 - |
| 1622815305.480305-CDS-L-elsbetiae_contig10878:4837..4936 | 1622815305.480305-CDS-L-elsbetiae_contig10878:4837..4936 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10878 4838..4936 - |
| 1691682828.421541-CDS-L-elsbetiae_contig10878:4837..4936 | 1691682828.421541-CDS-L-elsbetiae_contig10878:4837..4936 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10878 4838..4936 - |
| 1622815305.4911647-CDS-L-elsbetiae_contig10878:5192..5304 | 1622815305.4911647-CDS-L-elsbetiae_contig10878:5192..5304 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10878 5193..5304 - |
| 1691682828.4300554-CDS-L-elsbetiae_contig10878:5192..5304 | 1691682828.4300554-CDS-L-elsbetiae_contig10878:5192..5304 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10878 5193..5304 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig10878.801.1 >prot_L-elsbetiae_contig10878.801.1 ID=prot_L-elsbetiae_contig10878.801.1|Name=mRNA_L-elsbetiae_contig10878.801.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=147bp
RVAFRLVNLVFATVFLASAALQYNDEGGVAWAALYFVAAVFCILSELSWR
HLRTFLVLPTLWVFTIGSVIGAAYVLIALLLMGDPGEGASGEDAMDFYGL
VLVSFWMSTVLILDRHNVVGVFRGYTSLTEHERDREGHVQMGEVIL* back to topmRNA from alignment at L-elsbetiae_contig10878:2432..5304- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig10878.801.1 ID=mRNA_L-elsbetiae_contig10878.801.1|Name=mRNA_L-elsbetiae_contig10878.801.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2873bp|location=Sequence derived from alignment at L-elsbetiae_contig10878:2432..5304- (Laminarionema elsbetiae ELsaHSoW15)
AGGGTGGCGTTTCGTCTCGTCAACCTCGTGTTTGCTACCGTGTTTCTGGC
GTCAGCGGCGCTTCAGTACAACGATGAGGGCGGGGTGGCCTGGGCAGCTC
TCTACTTCGTCGGTGCGTCTAGTTCGATCCCACACTGTCAACAAAATCTC
ATCTTCGCAGCTTTTTCCGAGGAATTCCCGATTGGTTTTGGTCTTGATCC
GTATATACCCTCCCGGCAACTCCAACAGCGTGCGTGCACTTCGCAAGCTT
ATCTCGACCTCCCTTGTTGTGATATGCCATGGGGTGCCCGTGTCTTTCCC
CTCTTCGGTATTCGTGCGTGAACTGCGGACGCTTCTCTTGGCCTTGCCCA
CACACCGGTGACGTGCAGCTGCGGTGTTTTGCATCCTGTCTGAGCTGAGC
TGGAGGCATTTGCGGACGTTCTTGGTGCTGCCGACGCTGTGGGTGTTCAC
AATCGGCAGCGTGATCGGTGAGACCGAGGGGTTTTGTACACGTCTGGCTT
CCTTTCCATAGGGTAGTACACACAGAAAATGGGCGAGATTTACGAAAACG
CGCATGCCGTTCGCCAAGGGGGCATCCCCTCATCTGGAAAGTTAATGCAC
GATGCAGAGCATAAGAGGAGCCCTCTCTGCTGCTGCTGTGTGTCCTCACC
ATCAGTCTGCGTCGAAGCGATCTTTGCGATGGTTTGCTTAATCGCCGGAT
ACACACATTCAACCGACGCGTAGGTATGTATGTAGACTTGATTATTGCTG
TTGAAACACCAATTTTCTGAAAGCTTTTTTTTTTTTCATGTAATTTACAT
ACACGAATTCCCCGTTTTTTGGGCGTGCTCGACGCCACCACCACCAGGAG
CGGCGTACGTCCTTATTGCTCTGTTGCTGATGGGGGATCCCGGCGAAGGG
GCGTCGGGCGAGGATGCCATGGATTTTTACGGGCTGGTGTTGGTGTCATT
CTGGATGTCCACCGTGCTGATCCTAGACCGGTGAGAGCCCCCCCCGCCCT
CCCTTCGCTTGCGCGTGGTCGGACCTTGTGCACGGGTTGATGTGTAACCG
CTGCTGCTGCTGCTGCTGCTGCTGCTGCACCTGGTCGCCCATCCCTCCCG
CCTTCATCGCGATATTTTCCTGGGAGATAACACATCTAGGGGTGGAGTCT
CTAGGGCAGGCAGTGGGGACGTGCGTGTGTTTTTTTTTCTGCGCGTGGTG
GCGAGCTGCGTCTCCTCGGCATACTTTTGCTGTAGGTTGACTGACTGTTT
GCTGGGTAGGTTCAAGATGTGAACTTGTTTGTTTCCCGAATGTCGCGTGT
CGCGTATGGTGGCCGGGAGCCGGGAGCCCAGAAAAAGAGAAGCCAGTAGA
GCATGTCCAACCGAACAGAGGTTTGAGCGTCTCGAACGATTTTGCCACCG
CAACCACGGGGTTCGTTTTTTCTTGGACATTCATGCGCATTCGCGCGTAG
ATTTGATTGATTGCGTTTTGTTCACCCGACGTACCGTGCTGCTCAAGTCG
CTCCACCGCCCCGCCGCGACCGGTTATCCGCTCCCCGCCCGCTGCTCGGC
TCTGCTTCCCGTACAACAGTCACAACGTGGTCGGCGTGTTCCGCGGCTAC
ACGAGCTTGACAGAGCACGAGCGAGACAGGGAGGGACACGTGCAGATGGG
AGAAGTGATCCTTTGAGTCAGCCGGCTGCGGTTGTGCGCGCGCCGCGCAA
GGCGCCGCAGAGCGGCTTCAGTGTGTGTGTGTGTGTGACGATGATGGCAC
GGCACGGAGCCAGCGGAGCAGCAGTTTTATGGATGTTGTAATACTTTGTA
CTACATGCAATCTAATAATGTGTCACGCGAAAAAAGAATGTACATAATCT
AGGCGTAGAATCTAGGCGTAATAACTTTTACTTTTGTTCGGTTAGTTTCC
CTGGTTGTTTCTCCGCCTTGAGGAGAGCAGCGGCTTTTGAGGTTGTCGGC
GGAGGACCCAACAGGCATCGTGGGCCCACATTTATTTTGTTTCGTGCCAC
GGTCTGTGGCTGACCTTTGCGTCGAGCTTCTGAGCTAAAAGGTGGAAAGA
GAGACCTATGTAAGCTAAACGCTGAGCCTCTCTGCTTCGTGTATGGGTGT
GCGTCAGGTCGCGTCGCTTGCTGTACATAAAAAAGAGACGGCGACAAAAA
ATGAGAGCTGCAGTGACGAGTATGACAGCACGTACTTCTACATATATATG
TGCGTGTGTTTTTTTCGAAAGTGCCAGTTTGTGAGGCGACGAACTTGGTT
GAGCAGTGAAAATGTGAACGGTTCTTTGTGTTTGTTTTTTTTTACAGAGT
GTTTTTGTTTCGATGGTGTTTGATGTGTGGGTAAGTCAGGGCATGGTTTT
ATGCTCCCGCTTGTAACGTTTCATGCGTGATCGCCCGTCGGGAGTAGACT
TTTCACGACGGCAACAGAGAGAAACCCTATTTATTTGCTTCGAGGGAGGA
AGAAGAAGGATGAGGTTTGCAGTTCCCCTGGCTGTGTAGCTTTCGCGCGG
TTGCAGAAATCGTTGTCCTGGCAGGGACGCCTGTCTCGTCGAGAAGAGCG
AACGGGTCGCAAAAAGGCCGGTCACCTCGATGGTCTGTGGCGAGAATCGT
CCCGCCCGTTGAGGCGTGTTACATACGGAGTATGGTACCAATTAACAACA
GTAGAGAAATTTTTGACTTGAAGAGTTTGGCGACGATTTTGTGTGTGCAG
CCAGCCCCGCGGAGTTGCGGTGCATCTGGTGTATCATCCGGACGTGCTGA
GTAGGCGGTGGCTGTGACGGGCTTCTGCGGCTGTGCCCCGGCGCGATTGA
TATCTTCGTGTTTTCGCTACATACCGTCCGTGCGTACTAGTGTACATTGG
GCCCGTGAGTTGTTTTAGCCTCG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig10878:2432..5304- >mRNA_L-elsbetiae_contig10878.801.1 ID=mRNA_L-elsbetiae_contig10878.801.1|Name=mRNA_L-elsbetiae_contig10878.801.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=882bp|location=Sequence derived from alignment at L-elsbetiae_contig10878:2432..5304- (Laminarionema elsbetiae ELsaHSoW15)
AGGGTGGCGTTTCGTCTCGTCAACCTCGTGTTTGCTACCGTGTTTCTGGC
GTCAGCGGCGCTTCAGTACAACGATGAGGGCGGGGTGGCCTGGGCAGCTC
TCTACTTCGTCGAGGGTGGCGTTTCGTCTCGTCAACCTCGTGTTTGCTAC
CGTGTTTCTGGCGTCAGCGGCGCTTCAGTACAACGATGAGGGCGGGGTGG
CCTGGGCAGCTCTCTACTTCGTCGCTGCGGTGTTTTGCATCCTGTCTGAG
CTGAGCTGGAGGCATTTGCGGACGTTCTTGGTGCTGCCGACGCTGTGGGT
GTTCACAATCGGCAGCGTGATCGCTGCGGTGTTTTGCATCCTGTCTGAGC
TGAGCTGGAGGCATTTGCGGACGTTCTTGGTGCTGCCGACGCTGTGGGTG
TTCACAATCGGCAGCGTGATCGGAGCGGCGTACGTCCTTATTGCTCTGTT
GCTGATGGGGGATCCCGGCGAAGGGGCGTCGGGCGAGGATGCCATGGATT
TTTACGGGCTGGTGTTGGTGTCATTCTGGATGTCCACCGTGCTGATCCTA
GACCGGAGCGGCGTACGTCCTTATTGCTCTGTTGCTGATGGGGGATCCCG
GCGAAGGGGCGTCGGGCGAGGATGCCATGGATTTTTACGGGCTGGTGTTG
GTGTCATTCTGGATGTCCACCGTGCTGATCCTAGACCGTCACAACGTGGT
CGGCGTGTTCCGCGGCTACACGAGCTTGACAGAGCACGAGCGAGACAGGG
AGGGACACGTGCAGATGGGAGAAGTGATCCTTTGATCACAACGTGGTCGG
CGTGTTCCGCGGCTACACGAGCTTGACAGAGCACGAGCGAGACAGGGAGG
GACACGTGCAGATGGGAGAAGTGATCCTTTGA back to top
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