mRNA_L-elsbetiae_contig10878.801.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10878.801.1
Unique NamemRNA_L-elsbetiae_contig10878.801.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10878.801.1 vs. uniprot
Match: A0A6H5JWR3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWR3_9PHAE)

HSP 1 Score: 245 bits (625), Expect = 1.020e-74
Identity = 120/146 (82.19%), Postives = 132/146 (90.41%), Query Frame = 1 
Query:    1 RVAFRLVNLVFATVFLASAALQYNDEGGVAWAALYFVAAVFCILSELSWRHLRTFLVLPTLWVFTIGSVIGAAYVLIALLLMGDPGEGASGEDAMDFYGLVLVSFWMSTVLILDRHNVVGVFRGYTSLTEHERDREGHVQMGEVIL 438
            RV FRL+NL FA VFL+SA LQYND+ G+AWAALYF+AAVFCILSELSWRHLRTFLVLPTLW+FT+ S IGA YVLIA LL+G    GASGEDAMDFYGL+LVSFWMS VL+LDRHNVVGVFRGYTSLTEHERDREGHVQMGEV++
Sbjct:   67 RVTFRLINLGFAAVFLSSAILQYNDDDGIAWAALYFMAAVFCILSELSWRHLRTFLVLPTLWMFTLCSWIGAGYVLIAQLLVGHAEGGASGEDAMDFYGLLLVSFWMSIVLLLDRHNVVGVFRGYTSLTEHERDREGHVQMGEVVI 212
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BLAST of mRNA_L-elsbetiae_contig10878.801.1 vs. uniprot
Match: D7FJF2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJF2_ECTSI)

HSP 1 Score: 191 bits (485), Expect = 2.480e-55
Identity = 95/114 (83.33%), Postives = 101/114 (88.60%), Query Frame = 1 
Query:   97 ALYFVAAVFCILSELSWRHLRTFLVLPTLWVFTIGSVIGAAYVLIALLLMGDPGEGASGEDAMDFYGLVLVSFWMSTVLILDRHNVVGVFRGYTSLTEHERDREGHVQMGEVIL 438
            A Y  AAVFCILSELSWR LRTF VLPTLWVFT+ S IGAAYVLIA LL+G    GASGEDAMDFYGL+LVSFWMS VL+LDRHNVVGVFRGYTSLTEHERDREGHVQMGEV++
Sbjct:    5 ARYDAAAVFCILSELSWRQLRTFFVLPTLWVFTLCSWIGAAYVLIAQLLVGHAEGGASGEDAMDFYGLLLVSFWMSIVLLLDRHNVVGVFRGYTSLTEHERDREGHVQMGEVVI 118
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10878.801.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JWR3_9PHAE1.020e-7482.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJF2_ECTSI2.480e-5583.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10878contigL-elsbetiae_contig10878:2432..5304 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_006120.1
Exons4
Model size1648
Cds size441
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10878.801.1prot_L-elsbetiae_contig10878.801.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10878 3639..5304 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815305.4489934-UTR-L-elsbetiae_contig10878:2431..36381622815305.4489934-UTR-L-elsbetiae_contig10878:2431..3638Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10878 2432..3638 -
1691682828.392783-UTR-L-elsbetiae_contig10878:2431..36381691682828.392783-UTR-L-elsbetiae_contig10878:2431..3638Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10878 2432..3638 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815305.4602292-CDS-L-elsbetiae_contig10878:3638..37351622815305.4602292-CDS-L-elsbetiae_contig10878:3638..3735Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10878 3639..3735 -
1691682828.4043486-CDS-L-elsbetiae_contig10878:3638..37351691682828.4043486-CDS-L-elsbetiae_contig10878:3638..3735Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10878 3639..3735 -
1622815305.469092-CDS-L-elsbetiae_contig10878:4324..44571622815305.469092-CDS-L-elsbetiae_contig10878:4324..4457Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10878 4325..4457 -
1691682828.4125438-CDS-L-elsbetiae_contig10878:4324..44571691682828.4125438-CDS-L-elsbetiae_contig10878:4324..4457Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10878 4325..4457 -
1622815305.480305-CDS-L-elsbetiae_contig10878:4837..49361622815305.480305-CDS-L-elsbetiae_contig10878:4837..4936Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10878 4838..4936 -
1691682828.421541-CDS-L-elsbetiae_contig10878:4837..49361691682828.421541-CDS-L-elsbetiae_contig10878:4837..4936Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10878 4838..4936 -
1622815305.4911647-CDS-L-elsbetiae_contig10878:5192..53041622815305.4911647-CDS-L-elsbetiae_contig10878:5192..5304Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10878 5193..5304 -
1691682828.4300554-CDS-L-elsbetiae_contig10878:5192..53041691682828.4300554-CDS-L-elsbetiae_contig10878:5192..5304Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10878 5193..5304 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10878.801.1

>prot_L-elsbetiae_contig10878.801.1 ID=prot_L-elsbetiae_contig10878.801.1|Name=mRNA_L-elsbetiae_contig10878.801.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=147bp
RVAFRLVNLVFATVFLASAALQYNDEGGVAWAALYFVAAVFCILSELSWR
HLRTFLVLPTLWVFTIGSVIGAAYVLIALLLMGDPGEGASGEDAMDFYGL
VLVSFWMSTVLILDRHNVVGVFRGYTSLTEHERDREGHVQMGEVIL*
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mRNA from alignment at L-elsbetiae_contig10878:2432..5304-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10878.801.1 ID=mRNA_L-elsbetiae_contig10878.801.1|Name=mRNA_L-elsbetiae_contig10878.801.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2873bp|location=Sequence derived from alignment at L-elsbetiae_contig10878:2432..5304- (Laminarionema elsbetiae ELsaHSoW15)
AGGGTGGCGTTTCGTCTCGTCAACCTCGTGTTTGCTACCGTGTTTCTGGC
GTCAGCGGCGCTTCAGTACAACGATGAGGGCGGGGTGGCCTGGGCAGCTC
TCTACTTCGTCGGTGCGTCTAGTTCGATCCCACACTGTCAACAAAATCTC
ATCTTCGCAGCTTTTTCCGAGGAATTCCCGATTGGTTTTGGTCTTGATCC
GTATATACCCTCCCGGCAACTCCAACAGCGTGCGTGCACTTCGCAAGCTT
ATCTCGACCTCCCTTGTTGTGATATGCCATGGGGTGCCCGTGTCTTTCCC
CTCTTCGGTATTCGTGCGTGAACTGCGGACGCTTCTCTTGGCCTTGCCCA
CACACCGGTGACGTGCAGCTGCGGTGTTTTGCATCCTGTCTGAGCTGAGC
TGGAGGCATTTGCGGACGTTCTTGGTGCTGCCGACGCTGTGGGTGTTCAC
AATCGGCAGCGTGATCGGTGAGACCGAGGGGTTTTGTACACGTCTGGCTT
CCTTTCCATAGGGTAGTACACACAGAAAATGGGCGAGATTTACGAAAACG
CGCATGCCGTTCGCCAAGGGGGCATCCCCTCATCTGGAAAGTTAATGCAC
GATGCAGAGCATAAGAGGAGCCCTCTCTGCTGCTGCTGTGTGTCCTCACC
ATCAGTCTGCGTCGAAGCGATCTTTGCGATGGTTTGCTTAATCGCCGGAT
ACACACATTCAACCGACGCGTAGGTATGTATGTAGACTTGATTATTGCTG
TTGAAACACCAATTTTCTGAAAGCTTTTTTTTTTTTCATGTAATTTACAT
ACACGAATTCCCCGTTTTTTGGGCGTGCTCGACGCCACCACCACCAGGAG
CGGCGTACGTCCTTATTGCTCTGTTGCTGATGGGGGATCCCGGCGAAGGG
GCGTCGGGCGAGGATGCCATGGATTTTTACGGGCTGGTGTTGGTGTCATT
CTGGATGTCCACCGTGCTGATCCTAGACCGGTGAGAGCCCCCCCCGCCCT
CCCTTCGCTTGCGCGTGGTCGGACCTTGTGCACGGGTTGATGTGTAACCG
CTGCTGCTGCTGCTGCTGCTGCTGCTGCACCTGGTCGCCCATCCCTCCCG
CCTTCATCGCGATATTTTCCTGGGAGATAACACATCTAGGGGTGGAGTCT
CTAGGGCAGGCAGTGGGGACGTGCGTGTGTTTTTTTTTCTGCGCGTGGTG
GCGAGCTGCGTCTCCTCGGCATACTTTTGCTGTAGGTTGACTGACTGTTT
GCTGGGTAGGTTCAAGATGTGAACTTGTTTGTTTCCCGAATGTCGCGTGT
CGCGTATGGTGGCCGGGAGCCGGGAGCCCAGAAAAAGAGAAGCCAGTAGA
GCATGTCCAACCGAACAGAGGTTTGAGCGTCTCGAACGATTTTGCCACCG
CAACCACGGGGTTCGTTTTTTCTTGGACATTCATGCGCATTCGCGCGTAG
ATTTGATTGATTGCGTTTTGTTCACCCGACGTACCGTGCTGCTCAAGTCG
CTCCACCGCCCCGCCGCGACCGGTTATCCGCTCCCCGCCCGCTGCTCGGC
TCTGCTTCCCGTACAACAGTCACAACGTGGTCGGCGTGTTCCGCGGCTAC
ACGAGCTTGACAGAGCACGAGCGAGACAGGGAGGGACACGTGCAGATGGG
AGAAGTGATCCTTTGAGTCAGCCGGCTGCGGTTGTGCGCGCGCCGCGCAA
GGCGCCGCAGAGCGGCTTCAGTGTGTGTGTGTGTGTGACGATGATGGCAC
GGCACGGAGCCAGCGGAGCAGCAGTTTTATGGATGTTGTAATACTTTGTA
CTACATGCAATCTAATAATGTGTCACGCGAAAAAAGAATGTACATAATCT
AGGCGTAGAATCTAGGCGTAATAACTTTTACTTTTGTTCGGTTAGTTTCC
CTGGTTGTTTCTCCGCCTTGAGGAGAGCAGCGGCTTTTGAGGTTGTCGGC
GGAGGACCCAACAGGCATCGTGGGCCCACATTTATTTTGTTTCGTGCCAC
GGTCTGTGGCTGACCTTTGCGTCGAGCTTCTGAGCTAAAAGGTGGAAAGA
GAGACCTATGTAAGCTAAACGCTGAGCCTCTCTGCTTCGTGTATGGGTGT
GCGTCAGGTCGCGTCGCTTGCTGTACATAAAAAAGAGACGGCGACAAAAA
ATGAGAGCTGCAGTGACGAGTATGACAGCACGTACTTCTACATATATATG
TGCGTGTGTTTTTTTCGAAAGTGCCAGTTTGTGAGGCGACGAACTTGGTT
GAGCAGTGAAAATGTGAACGGTTCTTTGTGTTTGTTTTTTTTTACAGAGT
GTTTTTGTTTCGATGGTGTTTGATGTGTGGGTAAGTCAGGGCATGGTTTT
ATGCTCCCGCTTGTAACGTTTCATGCGTGATCGCCCGTCGGGAGTAGACT
TTTCACGACGGCAACAGAGAGAAACCCTATTTATTTGCTTCGAGGGAGGA
AGAAGAAGGATGAGGTTTGCAGTTCCCCTGGCTGTGTAGCTTTCGCGCGG
TTGCAGAAATCGTTGTCCTGGCAGGGACGCCTGTCTCGTCGAGAAGAGCG
AACGGGTCGCAAAAAGGCCGGTCACCTCGATGGTCTGTGGCGAGAATCGT
CCCGCCCGTTGAGGCGTGTTACATACGGAGTATGGTACCAATTAACAACA
GTAGAGAAATTTTTGACTTGAAGAGTTTGGCGACGATTTTGTGTGTGCAG
CCAGCCCCGCGGAGTTGCGGTGCATCTGGTGTATCATCCGGACGTGCTGA
GTAGGCGGTGGCTGTGACGGGCTTCTGCGGCTGTGCCCCGGCGCGATTGA
TATCTTCGTGTTTTCGCTACATACCGTCCGTGCGTACTAGTGTACATTGG
GCCCGTGAGTTGTTTTAGCCTCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10878:2432..5304-

>mRNA_L-elsbetiae_contig10878.801.1 ID=mRNA_L-elsbetiae_contig10878.801.1|Name=mRNA_L-elsbetiae_contig10878.801.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=882bp|location=Sequence derived from alignment at L-elsbetiae_contig10878:2432..5304- (Laminarionema elsbetiae ELsaHSoW15)
AGGGTGGCGTTTCGTCTCGTCAACCTCGTGTTTGCTACCGTGTTTCTGGC
GTCAGCGGCGCTTCAGTACAACGATGAGGGCGGGGTGGCCTGGGCAGCTC
TCTACTTCGTCGAGGGTGGCGTTTCGTCTCGTCAACCTCGTGTTTGCTAC
CGTGTTTCTGGCGTCAGCGGCGCTTCAGTACAACGATGAGGGCGGGGTGG
CCTGGGCAGCTCTCTACTTCGTCGCTGCGGTGTTTTGCATCCTGTCTGAG
CTGAGCTGGAGGCATTTGCGGACGTTCTTGGTGCTGCCGACGCTGTGGGT
GTTCACAATCGGCAGCGTGATCGCTGCGGTGTTTTGCATCCTGTCTGAGC
TGAGCTGGAGGCATTTGCGGACGTTCTTGGTGCTGCCGACGCTGTGGGTG
TTCACAATCGGCAGCGTGATCGGAGCGGCGTACGTCCTTATTGCTCTGTT
GCTGATGGGGGATCCCGGCGAAGGGGCGTCGGGCGAGGATGCCATGGATT
TTTACGGGCTGGTGTTGGTGTCATTCTGGATGTCCACCGTGCTGATCCTA
GACCGGAGCGGCGTACGTCCTTATTGCTCTGTTGCTGATGGGGGATCCCG
GCGAAGGGGCGTCGGGCGAGGATGCCATGGATTTTTACGGGCTGGTGTTG
GTGTCATTCTGGATGTCCACCGTGCTGATCCTAGACCGTCACAACGTGGT
CGGCGTGTTCCGCGGCTACACGAGCTTGACAGAGCACGAGCGAGACAGGG
AGGGACACGTGCAGATGGGAGAAGTGATCCTTTGATCACAACGTGGTCGG
CGTGTTCCGCGGCTACACGAGCTTGACAGAGCACGAGCGAGACAGGGAGG
GACACGTGCAGATGGGAGAAGTGATCCTTTGA
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