|
|
Homology
BLAST of mRNA_L-elsbetiae_contig10789.733.1 vs. uniprot
Match: A0A6H5KGI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGI3_9PHAE) HSP 1 Score: 89.7 bits (221), Expect = 3.670e-18 Identity = 90/141 (63.83%), Postives = 101/141 (71.63%), Query Frame = 2
Query: 209 LCAAVLSAGLTATSAFISTTTIPMASSGLALRPQRPQSGSGSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGIGGEGLAEVGTALSGAVGQAHASVMGSGLGTFLL-ADDP-APPNIFGEVAQG*EGARELFLGVF 625
L A+L AGLTATSAF+STT P+ SS L+ R XXXXXXXXXXXXXXXXXXXXXX G+GGEGLAE+G+ +SGAVGQAHAS MGSG+GTFLL ADDP APPNI+GEVAQG G +F GVF
Sbjct: 9 LLGALLGAGLTATSAFVSTT--PVVSSSLSAR-----------QLVXXXXXXXXXXXXXXXXXXXXXXRAMLFGGGGVGGEGLAELGSMVSGAVGQAHASAMGSGMGTFLLLADDPPAPPNIYGEVAQG--GFFIIFSGVF 134
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | chloroplast |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-09_002670.1 |
| Exons | 2 |
| Model size | 719 |
| Cds size | 423 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815297.5739365-UTR-L-elsbetiae_contig10789:3753..3922 | 1622815297.5739365-UTR-L-elsbetiae_contig10789:3753..3922 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig10789 3754..3922 + |
| 1691682823.4233515-UTR-L-elsbetiae_contig10789:3753..3922 | 1691682823.4233515-UTR-L-elsbetiae_contig10789:3753..3922 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig10789 3754..3922 + |
| 1622815297.601302-UTR-L-elsbetiae_contig10789:5813..5940 | 1622815297.601302-UTR-L-elsbetiae_contig10789:5813..5940 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig10789 5814..5940 + |
| 1691682823.4569833-UTR-L-elsbetiae_contig10789:5813..5940 | 1691682823.4569833-UTR-L-elsbetiae_contig10789:5813..5940 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig10789 5814..5940 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815297.5834222-CDS-L-elsbetiae_contig10789:3922..4014 | 1622815297.5834222-CDS-L-elsbetiae_contig10789:3922..4014 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10789 3923..4014 + |
| 1691682823.4343617-CDS-L-elsbetiae_contig10789:3922..4014 | 1691682823.4343617-CDS-L-elsbetiae_contig10789:3922..4014 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10789 3923..4014 + |
| 1622815297.5925236-CDS-L-elsbetiae_contig10789:5482..5813 | 1622815297.5925236-CDS-L-elsbetiae_contig10789:5482..5813 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10789 5483..5813 + |
| 1691682823.4447958-CDS-L-elsbetiae_contig10789:5482..5813 | 1691682823.4447958-CDS-L-elsbetiae_contig10789:5482..5813 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10789 5483..5813 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig10789.733.1 >prot_L-elsbetiae_contig10789.733.1 ID=prot_L-elsbetiae_contig10789.733.1|Name=mRNA_L-elsbetiae_contig10789.733.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=141bp
MHLFIGTSSVMILLCAAVLSAGLTATSAFISTTTIPMASSGLALRPQRPQ
SGSGSTAAAAAAAAAAAAATARGPRRTAAATASMMLGGGGIGGEGLAEVG
TALSGAVGQAHASVMGSGLGTFLLADDPAPPNIFGEVAQG* back to topmRNA from alignment at L-elsbetiae_contig10789:3754..5940+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig10789.733.1 ID=mRNA_L-elsbetiae_contig10789.733.1|Name=mRNA_L-elsbetiae_contig10789.733.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2187bp|location=Sequence derived from alignment at L-elsbetiae_contig10789:3754..5940+ (Laminarionema elsbetiae ELsaHSoW15)
CGGAGCCGCGGCTCGGGCAGCGGGCAGAGAGCGGAGAAGGAGTCATCGAG
CGAGAGAGGAACACGGCTGTGACGATAGTCAGTGACAGGAGGGTCAAACT
GCAGAATTTTCGCTCACGATACAGGGGACACCCAACGTGGACAGGAAAAG
TGCGCCGAGGGCGTGAATCATGCACCTCTTCATCGGCACCAGCAGCGTCA
TGATCCTCCTCTGCGCGGCTGTCCTATCGGCTGGGTTGACCGCCACCTCT
GCATTCATCTCGTAAGTTGCACGGGGCAGCGCTCATGGGTATGGCCTAGA
ATATCGCACGGTGCTCAACGGGTACACTGAATCGATGACACAGCAGGTTG
AACTGGGCCTTCCACAAATCCTCCTCTCGCTCCCACGTGTATGCACCTAA
ACACTAAATACACCGCTTCGTGTGCCCGGTGTTTATCAAGGCACACACAT
ACGCTGCACAGCCATTTATGTACAGATTTTCTTCCCGGAGCCCGCCCAGA
GCGCGAAAGTTGATCGACATCCTCGTGTACACATGCCCATAGACGTGAAA
ACCAGAGATGTGTTCTTTCTCTCTCTGTGTGATGCTTGCCATGGTGCATA
CCAGCTACCACCCCGTTCAGTCAACACGCCAAAACCCTACGCTCTGGGTG
TTACAGAAGCCTTGCCAAGCCTCTCTCTCAACCTGTACAACGCCTAAGTT
GCTGTTGCTGATTTGGAGTTGCTATCGCCGGAAAATAGGGGTATCCCGCT
CTTAGCCGCCGTCCCCCCCTCCGGATCAGATCTTAAAAATCATAGACAGA
GTTTCGTTGGTACATCCAGAGGGAGGTTCCGCCGCCTTATTTTTGCCTGG
CGGGAACATGACGTTTTTTGCGCCCGCTTGAGAAACCGTTCAACAAACCA
CTTGGATACACAAAGGGCAGAGCAGCTGGCAGACAAAGCACCACGATAAC
TCAGCCTTCGCAGGTCAATCCGGTCTGCCACATACTACCCTGTAGCCAGG
ATAAGAGAGATGCAAGAACCTGGTGAAAGAGGGAGAGAACAGGAAAATTG
TAAAAATGAGAGAGAGCCAGCACAAAGCGGGGCACGGTGAATCCCTCAAC
GTACACATTCAGCAAGTCAAAGAGGGTTTGCAGCATCGCGAATTTCGGCC
CGTACATAGATGTCAAGCCCTGGATATGCTTTGGTTGGTGATAGCTATGT
AGGGGTATAACCTGTCCTGCTGACCCCAAGGGTCGGGGCGCAAATGATAA
CTTTTCCCCGAAGTCGCTCCTTCCCTTGGACCAACCGAAGTTTCAGCGGG
GGTATTTTGTATCACACCTGGAACGCACACACGCAAGTACAAATATCCCA
GCAGCGCCACTTCGGGTATCCAATAACATCTCGTGCCTTCCAGGCAGCAT
TGGTTAGGTGGTGGACTGGCGAAACGCGAAAACACTTTTACGGGGCTTAC
AAGTGTCTGGCCCCGCCTGCCTGAAACGCCTCTGTATCTCCTGCCTGCAT
GGTTTTCCCAAAACGCTATTTTGCCCCCCCGGCCTACACAACCTCTCCCC
GACCGTAATTTTGTTTTTTAAGCCCGTTGCCGATAGAACAGGCTACCACC
CACAACCGCGCCCCCACATGTACATATGTGTATAAGGAAACCCGTATTCC
TTCGCCCAACAAACACACCCTCCCCCCCCCACGGAATCTTGCCACCCGTC
GCCCCTTTGCTCTCCAATTTCCTCCGCAGGACGACCACGATTCCCATGGC
GTCCTCAGGCCTCGCCCTTCGCCCGCAGCGCCCGCAAAGCGGGAGTGGCA
GCACGGCGGCCGCGGCGGCAGCCGCGGCAGCAGCAGCAGCAGCTACCGCA
CGAGGCCCTCGGCGGACAGCGGCAGCGACAGCCTCCATGATGCTCGGAGG
TGGGGGAATAGGCGGGGAGGGGCTGGCGGAGGTTGGAACGGCGCTCTCTG
GCGCCGTCGGGCAGGCGCACGCGAGCGTGATGGGCTCGGGCTTGGGTACG
TTCCTCCTCGCGGATGACCCGGCGCCCCCCAACATCTTCGGCGAGGTCGC
GCAGGGGTGAGAGGGAGCGCGAGAGCTGTTTCTCGGGGTCTTTTTAATTG
TTGTGTGCTTTTTGGTGGGTGGAGTCGACACCGGCCACAAGCTTTTCAGG
CGGGGCAAGGATAGGATGGACGGACGTCTTGGGAAGA back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig10789:3754..5940+ >mRNA_L-elsbetiae_contig10789.733.1 ID=mRNA_L-elsbetiae_contig10789.733.1|Name=mRNA_L-elsbetiae_contig10789.733.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=846bp|location=Sequence derived from alignment at L-elsbetiae_contig10789:3754..5940+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCACCTCTTCATCGGCACCAGCAGCGTCATGATCCTCCTCTGCGCGGC
TGTCCTATCGGCTGGGTTGACCGCCACCTCTGCATTCATCTCATGCACCT
CTTCATCGGCACCAGCAGCGTCATGATCCTCCTCTGCGCGGCTGTCCTAT
CGGCTGGGTTGACCGCCACCTCTGCATTCATCTCGACGACCACGATTCCC
ATGGCGTCCTCAGGCCTCGCCCTTCGCCCGCAGCGCCCGCAAAGCGGGAG
TGGCAGCACGGCGGCCGCGGCGGCAGCCGCGGCAGCAGCAGCAGCAGCTA
CCGCACGAGGCCCTCGGCGGACAGCGGCAGCGACAGCCTCCATGATGCTC
GGAGGTGGGGGAATAGGCGGGGAGGGGCTGGCGGAGGTTGGAACGGCGCT
CTCTGGCGCCGTCGGGCAGGCGCACGCGAGCGTGATGGGCTCGGGCTTGG
GTACGTTCCTCCTCGCGGATGACCCGGCGCCCCCCAACATCTTCGGCGAG
GTCGCGCAGGGGTGAGACGACCACGATTCCCATGGCGTCCTCAGGCCTCG
CCCTTCGCCCGCAGCGCCCGCAAAGCGGGAGTGGCAGCACGGCGGCCGCG
GCGGCAGCCGCGGCAGCAGCAGCAGCAGCTACCGCACGAGGCCCTCGGCG
GACAGCGGCAGCGACAGCCTCCATGATGCTCGGAGGTGGGGGAATAGGCG
GGGAGGGGCTGGCGGAGGTTGGAACGGCGCTCTCTGGCGCCGTCGGGCAG
GCGCACGCGAGCGTGATGGGCTCGGGCTTGGGTACGTTCCTCCTCGCGGA
TGACCCGGCGCCCCCCAACATCTTCGGCGAGGTCGCGCAGGGGTGA back to top
|