mRNA_L-elsbetiae_contig10760.704.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10760.704.1
Unique NamemRNA_L-elsbetiae_contig10760.704.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10760.704.1 vs. uniprot
Match: A0A6H5JPP0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPP0_9PHAE)

HSP 1 Score: 372 bits (956), Expect = 7.540e-115
Identity = 206/289 (71.28%), Postives = 232/289 (80.28%), Query Frame = 1 
Query:   70 LPCCGLSSISADG--GSPSTAGSSD--GNRPGSSVGYELTLAFSSTLRAARLPSVALEALHGATGLAMTGKQRAGWETEMAFVLLQMGRVGEAIVRLKSALEWDAGDLRVLQPLGAALVAQGKVAAGFHYLRTATDVQKSRIANVFGDLVRDQGLDPSVLDSSNEKGVLVTQRNWMAMYLGRALQGRWNELGDSVHVLRRVDSFLGRHFSVDSEISFMLGRELSKRGFQGESSHYLTSAAAPWNRQIYRIRSALSIPVVASSEQDLALVLAALERWLQGQEEPAVDKPP 924
            L  CGL  +S +G  G  + AG +D  G+  G+ VG+ELT+ FSS LRAARLPSVAL+ALHGA GL MT +QRA WETE A V LQ+GRVGEA+V LKSAL WDAGDLRVLQPLGAALVAQG VA GFHYLR A ++QKSRIA VF  +VR+QGLDPS+L++ N K      RNWMAM+LG ALQG+W +LG SVHVLRRVD+FL RHFS DSEISFMLGRELSKRGFQ ES HYLTSAAAPWNRQIYRIRSALSIP VASSEQDLAL +A LE WL+ QE P V+ PP
Sbjct:  185 LRTCGLLGVSIEGTSGLAAPAGKADLNGSERGN-VGFELTVIFSSVLRAARLPSVALDALHGAAGLTMTDRQRAAWETERALVWLQLGRVGEAVVGLKSALGWDAGDLRVLQPLGAALVAQGSVAEGFHYLREAAELQKSRIATVFEQIVRNQGLDPSILETKNRK------RNWMAMFLGWALQGKWKKLGGSVHVLRRVDNFLRRHFSADSEISFMLGRELSKRGFQKESWHYLTSAAAPWNRQIYRIRSALSIPTVASSEQDLALAMATLEGWLRRQE-PLVEDPP 465
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BLAST of mRNA_L-elsbetiae_contig10760.704.1 vs. uniprot
Match: D8LAX0_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAX0_ECTSI)

HSP 1 Score: 331 bits (848), Expect = 2.760e-100
Identity = 170/214 (79.44%), Postives = 185/214 (86.45%), Query Frame = 1 
Query:  259 MTGKQRAGWETEMAFVLLQMGRVGEAIVRLKSALEWDAGDLRVLQPLGAALVAQGKVAAGFHYLRTATDVQKSRIANVFGDLVRDQGLDPSVLDSSNEKGVLVTQRNWMAMYLGRALQGRWNELGDSVHVLRRVDSFLGRHFSVDSEISFMLGRELSKRGFQGESSHYLTSAAAPWNRQIYRIRSALSIPVVASSEQDLALVLAALERWLQGQE 900
            MT +QRA WETE A V LQ+GRVGEA+V LKSAL WDAGDLRVLQPLGAALVAQG VA GF YLR A ++QKSRIA VF  +VR+QGLDPSVL++ N K VLVTQRNWMAM+LG ALQG+W +LG SVHVLRRVD+FL RHFS DSEISFMLGRELSKRGFQ ES HYLTSAAAPWNRQIYRIRSALSIP VASSEQDLAL +AALE WL+ QE
Sbjct:    1 MTDRQRAAWETERALVWLQLGRVGEAVVGLKSALGWDAGDLRVLQPLGAALVAQGSVAEGFRYLREAAELQKSRIATVFEQIVRNQGLDPSVLETKNRKEVLVTQRNWMAMFLGWALQGKWKKLGGSVHVLRRVDNFLRRHFSADSEISFMLGRELSKRGFQKESWHYLTSAAAPWNRQIYRIRSALSIPTVASSEQDLALAMAALEGWLRRQE 214
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10760.704.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JPP0_9PHAE7.540e-11571.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LAX0_ECTSI2.760e-10079.44TPR repeat-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10760contigL-elsbetiae_contig10760:1116..4568 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size941
Cds size939
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10760.704.1prot_L-elsbetiae_contig10760.704.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10760 1116..4568 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815293.510563-CDS-L-elsbetiae_contig10760:1115..12591622815293.510563-CDS-L-elsbetiae_contig10760:1115..1259Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10760 1116..1259 -
1691682822.244691-CDS-L-elsbetiae_contig10760:1115..12591691682822.244691-CDS-L-elsbetiae_contig10760:1115..1259Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10760 1116..1259 -
1622815293.5199072-CDS-L-elsbetiae_contig10760:1747..18431622815293.5199072-CDS-L-elsbetiae_contig10760:1747..1843Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10760 1748..1843 -
1691682822.2534912-CDS-L-elsbetiae_contig10760:1747..18431691682822.2534912-CDS-L-elsbetiae_contig10760:1747..1843Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10760 1748..1843 -
1622815293.5287843-CDS-L-elsbetiae_contig10760:2411..25551622815293.5287843-CDS-L-elsbetiae_contig10760:2411..2555Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10760 2412..2555 -
1691682822.2668676-CDS-L-elsbetiae_contig10760:2411..25551691682822.2668676-CDS-L-elsbetiae_contig10760:2411..2555Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10760 2412..2555 -
1622815293.537926-CDS-L-elsbetiae_contig10760:3244..33631622815293.537926-CDS-L-elsbetiae_contig10760:3244..3363Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10760 3245..3363 -
1691682822.2752044-CDS-L-elsbetiae_contig10760:3244..33631691682822.2752044-CDS-L-elsbetiae_contig10760:3244..3363Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10760 3245..3363 -
1622815293.5470192-CDS-L-elsbetiae_contig10760:4132..45681622815293.5470192-CDS-L-elsbetiae_contig10760:4132..4568Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10760 4133..4568 -
1691682822.283573-CDS-L-elsbetiae_contig10760:4132..45681691682822.283573-CDS-L-elsbetiae_contig10760:4132..4568Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10760 4133..4568 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10760.704.1

>prot_L-elsbetiae_contig10760.704.1 ID=prot_L-elsbetiae_contig10760.704.1|Name=mRNA_L-elsbetiae_contig10760.704.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=313bp
SSPADLPAATAALPPSGGSVPPPLPCCGLSSISADGGSPSTAGSSDGNRP
GSSVGYELTLAFSSTLRAARLPSVALEALHGATGLAMTGKQRAGWETEMA
FVLLQMGRVGEAIVRLKSALEWDAGDLRVLQPLGAALVAQGKVAAGFHYL
RTATDVQKSRIANVFGDLVRDQGLDPSVLDSSNEKGVLVTQRNWMAMYLG
RALQGRWNELGDSVHVLRRVDSFLGRHFSVDSEISFMLGRELSKRGFQGE
SSHYLTSAAAPWNRQIYRIRSALSIPVVASSEQDLALVLAALERWLQGQE
EPAVDKPPSAPQQ
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mRNA from alignment at L-elsbetiae_contig10760:1116..4568-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10760.704.1 ID=mRNA_L-elsbetiae_contig10760.704.1|Name=mRNA_L-elsbetiae_contig10760.704.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3453bp|location=Sequence derived from alignment at L-elsbetiae_contig10760:1116..4568- (Laminarionema elsbetiae ELsaHSoW15)
AGCAGTCCCGCCGACCTACCGGCCGCCACGGCTGCTCTCCCCCCGAGCGG
TGGCAGCGTGCCACCGCCACTGCCGTGTTGTGGGCTCTCGAGCATCAGCG
CCGACGGCGGCAGCCCCAGCACCGCAGGCAGCAGCGACGGCAACCGTCCG
GGCAGCAGCGTCGGCTACGAGCTGACGCTCGCGTTTTCCTCGACGCTACG
GGCCGCGCGCCTGCCGTCCGTCGCCCTCGAGGCGCTCCACGGGGCCACCG
GGCTCGCCATGACGGGCAAGCAGAGGGCCGGGTGGGAGACAGAGATGGCC
TTCGTGCTGCTGCAGATGGGGCGGGTCGGGGAGGCGATCGTCAGGCTGAA
GAGCGCGCTGGAGTGGGACGCGGGCGACCTCCGGGTGCTGCAGCCGCTGG
GGGCGGCGCTCGTGGCCCAGGGGAAGGTGGCGGCAGGTGGGGGGGCCGCC
TACGCAAGAAAATTCACTTTATATGGGAAATAGAGTAAGGGGCCCTCGGT
AACCCTAACCCTAACCCTAACTCTACACCAAAGCCATAAACACATTAAGC
AAACATACTGGAAAAAGTATGTAGGAGTATATACTGGGAAAAGTATTGAA
ATCGGGGAAAAAAAAACTGCGTATTAGACTACAAGTGACACAAGATACCA
CACCCACGCCCTGGACCGAATTTTAGAGCTGTATTACTCCGTAACGAAGA
GGGTGACAGTGCCGGAAGGGGTGGCGTTGGAAATATCTGGTCGAGGGCTG
TTCGAAAATCCGTCGTTTGGTGCTGGCGCCGTCTTCGTTACGGAGTAATG
GAGCTCTAAAATTCGGTCCAGGGGGTGTGGTATCTTGTGTCACCTACGGT
AGAGGTGGGGGGGAGCCGCGGGGTTCACGAACGCTTCTTCTGTACCAAGG
GGGGGCGGGAGGGGTAGTTAGTGAACAGCGGCGAGCCTGCCCTGTAGGCT
GGCTTTATTATGCCAGTCGTTAATTCATCATTGACGGATAGGTATGTATA
CGCTGGTCGAGACATTGAGGGTGCTAAGCAGAGTTCGTAACTTCCAAACG
TAAGAGACGACTCTCTCGCCGCACAGCAAGCAGCACAGGCGTACATAAGG
TGGTTCGGACGCGGGCGGGCAAAGCACAAAGGACCATCACCAAACGGTGT
GTACCTCCCCCGCCCCCCCCCGGCCTCGTTCGCGCGCTTGTGTGTTTTTT
GGCAGGTTTTCACTATTTGCGGACAGCCACCGATGTGCAAAAGAGCAGGA
TAGCCAACGTATTTGGAGACCTCGTTCGGGACCAAGGGTTGGACCCTTCG
GTCCTTGACTCCAGCAACGAAAAGGTGCGTGGGCAAGCTGGCTATGCACC
TGCTGCTGCTTGTGTCCCTGGCTTCTTGGGGGGAGCTGTGTACATGTGTA
TGCCTGCATGTTTCTAGAGCGCGGGAGCGGTGGTGTCCATGTGCCCCGTG
GAAGTGTCCGTTCGGTTAGGGGGGGCACGAGGCCGGGCTCAACTTTCTTG
CCAATGCGAGCGAAAGCTCTCTTCGTCCCGTGATTATCTGAGAACGCCCC
GGGGGGGGCGAACAGATTCTACACTATATCCACCACGGAAAAGAGGGAGG
CGATTATTAACGACAAAATAGGATATAAAACCTGGAAATTTCTTCTCCGA
GATCTTTCCGACGACGCATCGCCGGGGTGTTATCATGGCGACCCACCTCT
CTCCGTTGTGAAAAATACAGCCTCTGCGAGGTCCGGGGGGCTTTCTGAGA
GGATATTATGTACGACGCCTTCGCTGCTGAAACCCCCTTGGTGGCCAGAA
ATCGGCGGTTTTCCGGCGCCTCGCCTGTGTGCAATACTCCCATCATAGGA
CGGGGTGAAGTTGACCCGACCCGACGCCTCCCTCTTACCTCTCGGCGTCT
TGCCTGTGCTTTGCGTCCTGGGATCGATCTGTATACATACCGCGGCGATC
GGATTTATTTCTCGCCCTGTGGCACCTTTCTATCCTGTCCTGTCCCCCCC
CGTGCTCGTTAAGGGGGTGCTGGTGACCCAGAGAAACTGGATGGCCATGT
ACCTCGGGCGGGCTTTGCAAGGGAGGTGGAATGAGCTCGGAGACTCGGTG
CACGTGCTGCGAAGAGTCGACAGCTTCCTGGGGAGGCATTTTTCGGTGGA
CTCGGAGGTGCGGGTAGTCGTGTCAGCGGGGAGGGGGGGAGGGGGGGGCA
TGGACGATCTTGCGTCGCACGGACTGGCAGCGGTGCATTCTTGTGCCGCT
TCCAGTGGATAGCGCTCAGCGTGTGTTACACAAACTTCGACCTCACCGTC
GACGAGGGAAAGGGACGGCTGAACCCTTCTCGCGATAAAAATAGTAGGCA
AGCACCCCAGACGGGGGGAGTGGGGGCCTTGGGGAAAGGAACCCTTCTGT
GTGACCACGGTTCAGTACTATGGCAAGATGTTCTCGTGACAGGGAGCCCA
TCGAGCACTGGAAACAAATTTGAAGAAATAAATATATATATATTTATATG
GGCGCGGCCGTTGTCCCAGTGCCTTTGTCGACGGGCTGGCAATGCCGGCA
CGTCTGTCCGGCTGGGGTTTACGCCCTCTTTCCCCCCTCCCCTGATGTTC
GTACAGCCGCCCGCTGTGTCAGTTATCTCGCTGATTATTTATTATTCTTC
CCTCCTTGTCTCTCTATTCTCTCTCTCTCTCTCTCTCTCTCCCTCCCTAT
CTGCCTCTCTCTGCCTCTCTGTTAGATTTCGTTCATGCTCGGCCGAGAGC
TCTCCAAGCGCGGCTTTCAGGGGGAGTCGTCGCATTACTTGACAAGTGCG
GCTGCCCCCTGGAACAGACAGGTACGGGTTGTTGCTCGGATGGCGGATGC
ATCGCGAGCATCCTGGGGAGGGTTTCCGGTTTGCGTGCTGTTTTCGGTTC
CCAGACGCCGCGTGCATCGTCTCGCCTACCGCTGCTGGTGGTTGTTCGTC
TGCGCGGGTTCCACGAACGAGATTTATTTTGCTGGATCCGTTACGCCGCC
GCACGCAGAGGAAAACAATTCCTGGTTATGTAGTTACCGGTCCCCGCTAC
AATAGCGCCGAGCGACGTGTGCGGCACCGCTATCTACGCCACCCGTCCCC
CAAGGATCTTCGGTCGGGCCTGTTTTTTGAAATTTCGCCGCAGGCGTGTT
GACCAATCGGCGAATTGCGTGCTACAAAACCTTTTCTCTCTCTACCGACC
TGCCGACTGTCTGATATATCAGCAAGCCCTCTCATGTTTTAGATGTTAGT
ACTTTTTCTGTCTCGATCCCCCCTCCTCCGATTTGTCCGTTTCCTGGTCG
AAACGTCAGATTTATCGCATTCGGTCGGCCTTGTCGATCCCGGTGGTAGC
AAGCAGTGAGCAGGATCTCGCGCTTGTACTGGCGGCACTAGAACGCTGGC
TGCAGGGTCAAGAAGAGCCTGCAGTCGATAAGCCGCCAAGCGCACCGCAG
CAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10760:1116..4568-

>mRNA_L-elsbetiae_contig10760.704.1 ID=mRNA_L-elsbetiae_contig10760.704.1|Name=mRNA_L-elsbetiae_contig10760.704.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1878bp|location=Sequence derived from alignment at L-elsbetiae_contig10760:1116..4568- (Laminarionema elsbetiae ELsaHSoW15)
AGCAGTCCCGCCGACCTACCGGCCGCCACGGCTGCTCTCCCCCCGAGCGG
TGGCAGCGTGCCACCGCCACTGCCGTGTTGTGGGCTCTCGAGCATCAGCG
CCGACGGCGGCAGCCCCAGCACCGCAGGCAGCAGCGACGGCAACCGTCCG
GGCAGCAGCGTCGGCTACGAGCTGACGCTCGCGTTTTCCTCGACGCTACG
GGCCGCGCGCCTGCCGTCCGTCGCCCTCGAGGCGCTCCACGGGGCCACCG
GGCTCGCCATGACGGGCAAGCAGAGGGCCGGGTGGGAGACAGAGATGGCC
TTCGTGCTGCTGCAGATGGGGCGGGTCGGGGAGGCGATCGTCAGGCTGAA
GAGCGCGCTGGAGTGGGACGCGGGCGACCTCCGGGTGCTGCAGCCGCTGG
GGGCGGCGCTCGTGGCCCAGGGGAAGGTGGCGGCAGAGCAGTCCCGCCGA
CCTACCGGCCGCCACGGCTGCTCTCCCCCCGAGCGGTGGCAGCGTGCCAC
CGCCACTGCCGTGTTGTGGGCTCTCGAGCATCAGCGCCGACGGCGGCAGC
CCCAGCACCGCAGGCAGCAGCGACGGCAACCGTCCGGGCAGCAGCGTCGG
CTACGAGCTGACGCTCGCGTTTTCCTCGACGCTACGGGCCGCGCGCCTGC
CGTCCGTCGCCCTCGAGGCGCTCCACGGGGCCACCGGGCTCGCCATGACG
GGCAAGCAGAGGGCCGGGTGGGAGACAGAGATGGCCTTCGTGCTGCTGCA
GATGGGGCGGGTCGGGGAGGCGATCGTCAGGCTGAAGAGCGCGCTGGAGT
GGGACGCGGGCGACCTCCGGGTGCTGCAGCCGCTGGGGGCGGCGCTCGTG
GCCCAGGGGAAGGTGGCGGCAGGTTTTCACTATTTGCGGACAGCCACCGA
TGTGCAAAAGAGCAGGATAGCCAACGTATTTGGAGACCTCGTTCGGGACC
AAGGGTTGGACCCTTCGGTCCTTGACTCCAGCAACGAAAAGGTTTTCACT
ATTTGCGGACAGCCACCGATGTGCAAAAGAGCAGGATAGCCAACGTATTT
GGAGACCTCGTTCGGGACCAAGGGTTGGACCCTTCGGTCCTTGACTCCAG
CAACGAAAAGGGGGTGCTGGTGACCCAGAGAAACTGGATGGCCATGTACC
TCGGGCGGGCTTTGCAAGGGAGGTGGAATGAGCTCGGAGACTCGGTGCAC
GTGCTGCGAAGAGTCGACAGCTTCCTGGGGAGGCATTTTTCGGTGGACTC
GGAGGGGGTGCTGGTGACCCAGAGAAACTGGATGGCCATGTACCTCGGGC
GGGCTTTGCAAGGGAGGTGGAATGAGCTCGGAGACTCGGTGCACGTGCTG
CGAAGAGTCGACAGCTTCCTGGGGAGGCATTTTTCGGTGGACTCGGAGAT
TTCGTTCATGCTCGGCCGAGAGCTCTCCAAGCGCGGCTTTCAGGGGGAGT
CGTCGCATTACTTGACAAGTGCGGCTGCCCCCTGGAACAGACAGATTTCG
TTCATGCTCGGCCGAGAGCTCTCCAAGCGCGGCTTTCAGGGGGAGTCGTC
GCATTACTTGACAAGTGCGGCTGCCCCCTGGAACAGACAGATTTATCGCA
TTCGGTCGGCCTTGTCGATCCCGGTGGTAGCAAGCAGTGAGCAGGATCTC
GCGCTTGTACTGGCGGCACTAGAACGCTGGCTGCAGGGTCAAGAAGAGCC
TGCAGTCGATAAGCCGCCAAGCGCACCGCAGCAAATTTATCGCATTCGGT
CGGCCTTGTCGATCCCGGTGGTAGCAAGCAGTGAGCAGGATCTCGCGCTT
GTACTGGCGGCACTAGAACGCTGGCTGCAGGGTCAAGAAGAGCCTGCAGT
CGATAAGCCGCCAAGCGCACCGCAGCAA
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