mRNA_L-elsbetiae_contig10727.679.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10727.679.1
Unique NamemRNA_L-elsbetiae_contig10727.679.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig10727.679.1 vs. uniprot
Match: A0A6H5L8R1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8R1_9PHAE)

HSP 1 Score: 278 bits (711), Expect = 9.320e-85
Identity = 194/300 (64.67%), Postives = 209/300 (69.67%), Query Frame = 1
Query:    1 MVCPPGMDPEVFAQLPAEMQQEVIREHRSTMGSMEDQAELLEAAXXXXXXXXXXXXXXXXXXLEQEARNRRMRAAXXXXXXXXXXXXXXXXXGGPADPSHAEEMDNASIVATLPPEVRRDVLLTADEALLGTLPPNLVAEAMVLRERIPHQAEFQAAQAAQVAGYASRVRAGTGAG-----------GAARGSAAA----------GVAEA--------------------------KNAHEGEWKLEADLKGSDTVPPRVPRETLVMLIRLLHLLTPIRPHRLLQRTVLNLCAGHPAVR 759
            +VCPPGMDP+VFAQLP +MQQEV+REHRST+GSMEDQAELLEAAXXXXXXXXXXXXXXXXXXLEQEARNRRMR A                 GGPADPS A EMDNAS VATLPPE+RR+VLL+AD+ALL TLPP+LVAEAMV+RERIPHQA       AQ AGYAS VRAG                AARGS+ A           VA A                          +N HEGEWKLEAD KGSDT PP+VPRET+VMLIRLLHLLTPIRPHRLLQRTVLNLCAGHP VR
Sbjct:  510 LVCPPGMDPDVFAQLPPDMQQEVVREHRSTVGSMEDQAELLEAAXXXXXXXXXXXXXXXXXXLEQEARNRRMREAPGNA-------------GGPADPSRASEMDNASFVATLPPELRREVLLSADDALLSTLPPDLVAEAMVMRERIPHQA-------AQAAGYASGVRAGAXXXXXXXXXXXXXXSAARGSSGAQTXXXXXXXTNVASAAQAIGGWPCVENCCVCKYIGAARQALRNTHEGEWKLEADPKGSDTTPPQVPRETVVMLIRLLHLLTPIRPHRLLQRTVLNLCAGHPLVR 789          
BLAST of mRNA_L-elsbetiae_contig10727.679.1 vs. uniprot
Match: D7G3W3_ECTSI (HECT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3W3_ECTSI)

HSP 1 Score: 272 bits (696), Expect = 5.630e-80
Identity = 169/265 (63.77%), Postives = 179/265 (67.55%), Query Frame = 1
Query:  103 EDQAELLEAAXXXXXXXXXXXXXXXXXXLEQEARNRRMRAAXXXXXXXXXXXXXXXXXGGPADPSHAEEMDNASIVATLPPEVRRDVLLTADEALLGTLPPNLVAEAMVLRERIPHQAEFQAAQAAQVAGYASRVRAGT------------------GAGGAARGS---AAAGVAEA-----------KNAHEGEWKLEADLKGSDTVPPRVPRETLVMLIRLLHLLTPIRPHRLLQRTVLNLCAGHPAVRRAVVQALVHLIKSD 801
            EDQAELLEAA                  LEQEARNRRMR A                 GGP DPS A EMDNAS VATLPPE+RR+VLL+AD+ALL TLPPNLVAEAMV+RERIPHQAEFQAAQAAQ AGYAS VRAG                   G+ GA  GS    A  VA A           +N HEGEWKLEADLKGSDT PP+VPRET+VMLIRLLHLLTPIRPHRLLQRTVLNLCAGHP VRRAVVQALVH+IKSD
Sbjct:  602 EDQAELLEAAGLDPEALAALPADMRREVLEQEARNRRMREAPGNA-------------GGPVDPSRASEMDNASFVATLPPELRREVLLSADDALLSTLPPNLVAEAMVMRERIPHQAEFQAAQAAQAAGYASGVRAGXXXXXXXXXXXXXXXSAARGSSGAQTGSXXXGATNVASAAQAIGAARQALRNTHEGEWKLEADLKGSDTTPPQVPRETVVMLIRLLHLLTPIRPHRLLQRTVLNLCAGHPLVRRAVVQALVHMIKSD 853          
BLAST of mRNA_L-elsbetiae_contig10727.679.1 vs. uniprot
Match: A0A7S2W4E8_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W4E8_9STRA)

HSP 1 Score: 112 bits (280), Expect = 2.690e-24
Identity = 110/280 (39.29%), Postives = 158/280 (56.43%), Query Frame = 1
Query:    1 MVCPPGMDPEVFAQLPAEMQQEVIREHRSTMGSMEDQAELLEAAXXXXXXXXXXXXXXXXXXLEQEARNRRMRAAXXXXXXXXXXXXXXXXXGGPADPSHAEEMDNASIVATLPPEVRRDVLLTADEALLGTLPPNLVAEAMVLRERIP--HQAEFQAAQAAQV--AGYASRVRAGTGAGGAARGSAAAGVAEAKNAHE-GEWKLEADLKGSDTVPPRVPRET--------LVMLIRLLHLLTPIRPHRLLQRTVLNLCAGHPAVRRAVVQALVHLIKSD 801
            +VCPPGMD EVF  LP EMQQE+I++H+ T+      A+L  ++XXXXXXXXXXXXXXXXXX       RR+R                     PADPS+AEEMDNAS + +L P++R ++LLTA+E+ L TLP +++AEA +LRER    H+       AA    +G  +  R+G  A  A+  + A+     +  ++ G+ + + +      +PP +  E         L  LIRL  LL+P+RP RLLQ+ + N+C     +RR+V+   V L+  D
Sbjct:  673 LVCPPGMDLEVFNSLPHEMQQEIIQQHQETINVA---AQLDASSXXXXXXXXXXXXXXXXXXXXXXXXERRLRDQA------------------PADPSNAEEMDNASFIVSLAPDLREEILLTAEESFLNTLPSDIIAEAQLLRERAASHHRRSNDVVVAAPSGNSGIEAPPRSGANASSASEENQASTHVSGRRRNKIGKMRTDCNRSSIIYMPPVIKNEVGPLMTSNALKALIRLTFLLSPVRPQRLLQKLIQNICVNAD-IRRSVLTCSVALLNDD 930          
BLAST of mRNA_L-elsbetiae_contig10727.679.1 vs. uniprot
Match: A0A1Z5JHS1_FISSO (HECT-type E3 ubiquitin transferase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JHS1_FISSO)

HSP 1 Score: 110 bits (276), Expect = 9.690e-24
Identity = 93/281 (33.10%), Postives = 133/281 (47.33%), Query Frame = 1
Query:    1 MVCPPGMDPEVFAQLPAEMQQEVIREHRSTMGSMEDQAELLEAAXXXXXXXXXXXXXXXXXXLEQEARNRRMRAAXXXXXXXXXXXXXXXXXGGPADPSHAEEMDNASIVATLPPEVRRDVLLTADEALLGTLPPNLVAEAMVLRERIPHQA----------EFQAAQAAQVAGYASRVRAGTGAGGAARGSAAAGVAEAKNAHEGEWKLEADLKGSDTVPPR----VPRETLVMLIRLLHLLTPIRPHRLLQRTVLNLCAGHPAVRRAVVQALVHLIKSD 801
            +VCPPG DPEVF  LP EMQ + + ++ +T    E + EL E+                    +      R R                    G ADPSHAEEMD AS +A+L P +R +VLLTAD ++L +LPP++VAEA VLRER               E Q   A  V G  S   A TG     RG+      + K    G++K+E DL  +  +P      V +  + + I+L  L++PIRP RL+Q+ + N C+  P +R   + A + L+  +
Sbjct: 3002 LVCPPGFDPEVFNSLPVEMQHDCVSQYNATQ---ELEMELRESTLDPSVLAELPEDIRRDIIEQDRIERERARQQNEGD--------------GAADPSHAEEMDTASFIASLAPGLREEVLLTADNSVLSSLPPDVVAEAQVLRERASGLRDGRLFAESVDETQQGNAVGVDGTVSSRLAVTG-----RGTVTEMPGQKKRQRTGKFKVEKDLDDTVYLPNSLFSPVCKSDVQLFIKLFFLVSPIRPQRLMQKVLQNFCSI-PTLREFFLNAFLALLNEN 3259          
BLAST of mRNA_L-elsbetiae_contig10727.679.1 vs. uniprot
Match: A0A7S2Y5L7_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y5L7_9STRA)

HSP 1 Score: 109 bits (273), Expect = 2.220e-23
Identity = 112/271 (41.33%), Postives = 147/271 (54.24%), Query Frame = 1
Query:    1 MVCPPGMDPEVFAQLPAEMQQEVIREHRSTMGSMEDQAELLEAAXXXXXXXXXXXXXXXXXXLEQEARNRRMRAAXXXXXXXXXXXXXXXXXGGPADPSHAEEMDNASIVATLPPEVRRDVLLTADEALLGTLPPNLVAEAMVLRERIPHQAEFQAAQAAQVAGYASRVRAGTGAGGAARGSAAAGVAEAKNAHEGEWKLEADLKGSDTVPPRVPRET----LVMLIRLLHLLTPIRPHRLLQRTVLNLCAGHPAVRRAVVQALVHLIKSD 801
            +VCPPG+DPE F  LP EMQ +V+REH     S E  AEL + +  XXXXXXXXXXXXXXXX EQE R R                        PADPS A +MDNAS +ATLPPE+R +VL TAD+  L +LPPNL+AEA VLRER   Q +    +AA                  A  S AA     K    G+ K+EA+ +     P  + +      L ++++L  LL+P+RP RLLQ+ + N C+  P +R  +  AL+ L+  +
Sbjct:  402 LVCPPGVDPEAFRALPREMQLDVVREHSQ---SSELAAEL-DGSTLXXXXXXXXXXXXXXXXXEQERRERSRETEEAA----------------PADPSLAADMDNASFIATLPPELRAEVLATADDETLNSLPPNLIAEANVLRERAAEQRQ----RAAXXXXXXXXXXXXXXXXXRAAPSEAASNTR-KKPRTGKLKVEANREDLIYTPEGMSQPLAKCDLQLILQLFFLLSPVRPQRLLQKILQNFCSK-PELRAVLSTALLQLLHEN 646          
BLAST of mRNA_L-elsbetiae_contig10727.679.1 vs. uniprot
Match: A0A1Z5KPP7_FISSO (HECT-type E3 ubiquitin transferase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KPP7_FISSO)

HSP 1 Score: 107 bits (268), Expect = 1.110e-22
Identity = 89/282 (31.56%), Postives = 140/282 (49.65%), Query Frame = 1
Query:    1 MVCPPGMDPEVFAQLPAEMQQEVIREHRSTMG-SMEDQAELLEAAXXXXXXXXXXXXXXXXXXLEQEARNRRMRAAXXXXXXXXXXXXXXXXXGGPADPSHAEEMDNASIVATLPPEVRRDVLLTADEALLGTLPPNLVAEAMVLRERIPHQAE----------FQAAQAAQVAGYASRVRAGTGAGGAARGSAAAGVAEAKNAHEGEWKLEADLKGSDTVPPR----VPRETLVMLIRLLHLLTPIRPHRLLQRTVLNLCAGHPAVRRAVVQALVHLIKSD 801
            +VCPPG DPEVF  LP EMQ + + ++ +T    M+ +   L+ +                  +E+E   +++                     G ADPSHAEEMD AS +A+L P +R +VLLTAD ++L +LPP++VAEA VLRER     +           Q   A    G  S   A TG     RG+ +   ++ K    G++K+E DL  +  +P      V +  + + I+L  L++PIRP RL+Q+ + N C+  P++R   + A + L+ ++
Sbjct: 3002 LVCPPGFDPEVFNSLPVEMQHDCVSQYNATQELEMQLRESTLDPSVLAELPEDIRRDIIEQDRIERERARQQIEGD------------------GVADPSHAEEMDTASFIASLAPGLREEVLLTADSSVLSSLPPDVVAEAQVLRERASGLRDGRLFAENVDGAQQGNAVGGDGTDSSRLAVTG-----RGTVSELPSQKKRQRTGKFKVEKDLDDTVYLPSSLFSPVCKSDVKLFIKLFFLVSPIRPQRLMQKVIQNFCSI-PSLREFFLTAFLALLNAN 3259          
BLAST of mRNA_L-elsbetiae_contig10727.679.1 vs. uniprot
Match: A0A7S2L5N5_9STRA (Hypothetical protein n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2L5N5_9STRA)

HSP 1 Score: 106 bits (265), Expect = 2.670e-22
Identity = 105/285 (36.84%), Postives = 155/285 (54.39%), Query Frame = 1
Query:    1 MVCPPGMDPEVFAQLPAEMQQEVIREHRSTMGSMEDQAELLEAAXXXXXXXXXXXXXXXXXXLEQEARNRRMRAAXXXXXXXXXXXXXXXXXGGPADPSHAEEMDNASIVATLPPEVRRDVLLTADEALLGTLPPNLVAEAMVLRERI--PHQAEFQAAQAAQVAGYASRVRAGTGAGGAARGSAAAGVAEAKN--------AHEGEWKLEADLK--------GSDTVPPRVPRETLVMLIRLLHLLTPIRPHRLLQRTVLNLCAGHPAVRRAVVQALVHLIKSD 801
            + CPP +DPEVFA LP EMQQE++ EH +    M + A  +  +  XXXXXXXXXXXXXXXX E+E   +R+R                      ADP++AEE+D AS +A+L PE+R+D+LLTAD+  L  LP N+ AEA  LRER+   HQ     A AA  A          GAG  A GS  +   +A++           G+ ++E D +          D + P +  +++ +L+ LL+L++P++P R++ + +LNLC  H   R   + +L  L+ +D
Sbjct: 1360 IACPPDVDPEVFASLPLEMQQELLAEHNA----MNEVAAQIPGSSLXXXXXXXXXXXXXXXXXEEEQHQQRLREREAAQPA--------------ADPANAEEIDPASFLASLTPELRQDILLTADDTFLQGLPQNIQAEANALRERVVASHQRRRDEANAANAA---------AGAGSRAVGSRPSSANDAQSNAPPRARRQRNGKLRVETDKEEIIYIPESARDGLGPLINAKSVKVLLNLLYLVSPLQPQRVVHKLLLNLCL-HAESRGIFLYSLAALLNND 1616          
BLAST of mRNA_L-elsbetiae_contig10727.679.1 vs. uniprot
Match: A0A7S4HZ14_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HZ14_9STRA)

HSP 1 Score: 103 bits (258), Expect = 3.140e-22
Identity = 66/151 (43.71%), Postives = 85/151 (56.29%), Query Frame = 1
Query:    1 MVCPPGMDPEVFAQLPAEMQQEVIREHRSTMG----SMEDQAELLEAAXXXXXXXXXXXXXXXXXXLEQEARNRRMRAAXXXXXXXXXXXXXXXXXGGPADPSHAEEMDNASIVATLPPEVRRDVLLTADEALLGTLPPNLVAEAMVLRER 441
            + CPPGMD EVF  LP +MQ+EVI EH ST G    +     +L   +               XX +EQE R RR R                     PADPS+AEEMDNAS VA+L P++R ++LLTAD+A LG+LPP++ +EA +LRER
Sbjct:  187 LACPPGMDLEVFNSLPPDMQREVIAEHESTTGGGGSTAASDVQLDSTSALDPEALAALPEEMRXXVIEQERRERRAREEERSEP--------------PADPSNAEEMDNASFVASLAPDLREEILLTADDAFLGSLPPDMQSEAQILRER 323          
BLAST of mRNA_L-elsbetiae_contig10727.679.1 vs. uniprot
Match: A0A448ZD07_9STRA (HECT-type E3 ubiquitin transferase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZD07_9STRA)

HSP 1 Score: 103 bits (258), Expect = 2.330e-21
Identity = 117/271 (43.17%), Postives = 153/271 (56.46%), Query Frame = 1
Query:    1 MVCPPGMDPEVFAQLPAEMQQEVIREHRSTMGSMEDQAELLEAAXXXXXXXXXXXXXXXXXXLEQEARNRRMRAAXXXXXXXXXXXXXXXXXGGPADPSHAEEMDNASIVATLPPEVRRDVLLTADEALLGTLPPNLVAEAMVLRERIPHQAEFQAAQA----------------AQVAGYASRVRAGTGAGGAARGSAAAGVAEAKNAHEGEWKLEADLKGSDTVPPR-------VPRETLVMLIRLLHLLTPIRPHRLLQRTVLNLCAG 744
            +VCP GMDPEVF  LP EMQQEVI + R T  ++ DQ   L+A  XXXXXXXXXXXXXXXXX                      XXXXXXXX  PADPS+A EMDNAS +A+L PE+R D+LLTADE+++ +LPPN++AEA VLRER   +AE QA +                 A      S +++G G     R      V+  +    G+ ++++D K    +P R       + +  L  LIR L+LL+PIRPHR+LQ+   N+   
Sbjct: 3227 LVCPSGMDPEVFDALPIEMQQEVINQARET-SALADQ---LDAGSXXXXXXXXXXXXXXXXXXXXXX-----------------XXXXXXXXXXPADPSNAAEMDNASFIASLAPELRNDILLTADESVIQSLPPNIIAEAQVLRERRA-RAEAQAHRRNFAENSTQGNQRTSTNANNVVVRSNIQSGQG-----RDQ----VSSRRKQRTGKIRVDSDRKEIAFIPTRGHVSSTIIAKSDLKALIRFLYLLSPIRPHRILQKVFQNIATN 3466          
BLAST of mRNA_L-elsbetiae_contig10727.679.1 vs. uniprot
Match: A0A7S1VJ82_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VJ82_9STRA)

HSP 1 Score: 103 bits (256), Expect = 4.170e-21
Identity = 88/257 (34.24%), Postives = 123/257 (47.86%), Query Frame = 1
Query:    4 VCPPGMDPEVFAQLPAEMQQEVIREHRSTMGSMEDQAELLEAAXXXXXXXXXXXXXXXXXXLEQEARNRRMRAAXXXXXXXXXXXXXXXXXGGPADPSHAEEMDNASIVATLPPEVRRDVLLTADEALLGTLPPNLVAEAMVLRERIPHQAEFQAAQ---AAQVAGYASRVRAGTGAGGAARGSAAAGVAEAKNAHEGEWKLEADLKGSDTVPPRVPRETLVM-------LIRLLHLLTPIRPHRLLQRTVLNLCAG 744
            VCPPGMD E F  LP +MQQEV+ +H+ T    E  A+L   +                  + Q+ R R   A                    PADPS+A EMDNAS + +L PE+R ++LLTADE  L +LPPN+ AEA +LRER   + + +      AA+     +  +A T AG   R +          A  G+ K + D      VP  +  + +         ++RLL LL+P+RPHRLLQ+  LNL + 
Sbjct: 1765 VCPPGMDAEAFNSLPPDMQQEVVSQHQITE---ELTAQLDPTSGLDPSVLAELPEDMRRDAIAQDRREREEAARAAQ----------------PADPSNAAEMDNASFLVSLAPELREEILLTADENFLNSLPPNIRAEAQLLRERASVRRQIRVPPDDGAARSVRETNEGQANTAAGSRRRRT---------RALTGKVKADCDRSQVIFVPQGLKEKDVAFGCPQMQTILRLLFLLSPVRPHRLLQKLFLNLSSN 1993          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10727.679.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L8R1_9PHAE9.320e-8564.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3W3_ECTSI5.630e-8063.77HECT domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7S2W4E8_9STRA2.690e-2439.29Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A1Z5JHS1_FISSO9.690e-2433.10HECT-type E3 ubiquitin transferase n=1 Tax=Fistuli... [more]
A0A7S2Y5L7_9STRA2.220e-2341.33Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A1Z5KPP7_FISSO1.110e-2231.56HECT-type E3 ubiquitin transferase n=1 Tax=Fistuli... [more]
A0A7S2L5N5_9STRA2.670e-2236.84Hypothetical protein n=2 Tax=Skeletonema marinoi T... [more]
A0A7S4HZ14_9STRA3.140e-2243.71Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A448ZD07_9STRA2.330e-2143.17HECT-type E3 ubiquitin transferase n=1 Tax=Pseudo-... [more]
A0A7S1VJ82_9STRA4.170e-2134.24Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10727contigL-elsbetiae_contig10727:3620..4489 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score276.2
Seed ortholog evalue1.6e-71
Seed eggNOG ortholog2880.D7G3W3
Preferred nameUPL1
KEGG koko:K10592
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005829,GO:0005911,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009506,GO:0009987,GO:0016020,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0030054,GO:0032446,GO:0032991,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0055044,GO:0061630,GO:0061659,GO:0070647,GO:0071704,GO:0140096,GO:1901564,GO:1902494,GO:1990234
EggNOG free text desc.ubiquitin protein ligase activity
EggNOG OGsCOG5021@1,KOG0939@2759
EC2.3.2.26
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Exons2
Model size801
Cds size801
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815291.2183113-CDS-L-elsbetiae_contig10727:3619..41771622815291.2183113-CDS-L-elsbetiae_contig10727:3619..4177Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10727 3620..4177 +
1691682820.7564585-CDS-L-elsbetiae_contig10727:3619..41771691682820.7564585-CDS-L-elsbetiae_contig10727:3619..4177Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10727 3620..4177 +
1622815291.2283258-CDS-L-elsbetiae_contig10727:4246..44891622815291.2283258-CDS-L-elsbetiae_contig10727:4246..4489Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10727 4247..4489 +
1691682820.7682762-CDS-L-elsbetiae_contig10727:4246..44891691682820.7682762-CDS-L-elsbetiae_contig10727:4246..4489Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10727 4247..4489 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10727.679.1prot_L-elsbetiae_contig10727.679.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10727 3620..4489 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10727.679.1

>prot_L-elsbetiae_contig10727.679.1 ID=prot_L-elsbetiae_contig10727.679.1|Name=mRNA_L-elsbetiae_contig10727.679.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=267bp
MVCPPGMDPEVFAQLPAEMQQEVIREHRSTMGSMEDQAELLEAAGLDPEA
LAALPPDMRQEVLEQEARNRRMRAASSGGGGGGGGGGGGSGAGGPADPSH
AEEMDNASIVATLPPEVRRDVLLTADEALLGTLPPNLVAEAMVLRERIPH
QAEFQAAQAAQVAGYASRVRAGTGAGGAARGSAAAGVAEAKNAHEGEWKL
EADLKGSDTVPPRVPRETLVMLIRLLHLLTPIRPHRLLQRTVLNLCAGHP
AVRRAVVQALVHLIKSD
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mRNA from alignment at L-elsbetiae_contig10727:3620..4489+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10727.679.1 ID=mRNA_L-elsbetiae_contig10727.679.1|Name=mRNA_L-elsbetiae_contig10727.679.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=870bp|location=Sequence derived from alignment at L-elsbetiae_contig10727:3620..4489+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTTTGCCCGCCGGGCATGGACCCCGAAGTGTTTGCGCAGCTGCCCGC CGAGATGCAGCAAGAGGTGATCCGGGAGCACCGTAGCACAATGGGGAGCA TGGAGGACCAGGCGGAGCTGCTGGAAGCGGCCGGGCTCGACCCCGAAGCT CTTGCAGCTCTGCCCCCCGACATGCGGCAGGAGGTTCTTGAGCAGGAGGC TCGCAACCGCCGCATGAGAGCGGCATCCAGCGGCGGCGGCGGCGGCGGCG GCGGCGGCGGCGGAGGCAGCGGCGCGGGGGGCCCGGCGGACCCGTCCCAC GCTGAGGAGATGGACAACGCTTCCATCGTGGCCACGCTGCCGCCGGAGGT CCGCCGCGACGTCCTGCTGACCGCAGACGAGGCGCTGCTGGGCACGCTGC CGCCGAACCTGGTGGCGGAGGCCATGGTCCTCCGGGAGCGCATACCGCAC CAGGCGGAGTTCCAGGCGGCCCAGGCGGCGCAAGTGGCCGGCTACGCATC CCGCGTGCGGGCCGGGACCGGGGCCGGCGGCGCGGCGAGGGGCTCCGCAG CCGCCGGCGTTCAGGCCGGGGGGGGCAGGGGCGCCGCCGCTGCCGCGGCG GCAGCCGCGGCGGGCACCGCGCTTCAGGTCGCGGAGGCGAAGAATGCCCA CGAGGGGGAGTGGAAGCTGGAGGCGGACCTCAAGGGCTCGGACACCGTGC CCCCCCGCGTGCCGCGGGAGACGCTGGTGATGCTAATCCGCCTGCTGCAC CTGCTGACCCCCATCCGGCCCCACCGCCTCCTCCAGCGCACGGTGCTCAA CCTGTGCGCCGGGCACCCCGCCGTCAGGCGGGCGGTCGTCCAGGCGCTAG TGCACCTGATCAAGTCCGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10727:3620..4489+

>mRNA_L-elsbetiae_contig10727.679.1 ID=mRNA_L-elsbetiae_contig10727.679.1|Name=mRNA_L-elsbetiae_contig10727.679.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1602bp|location=Sequence derived from alignment at L-elsbetiae_contig10727:3620..4489+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTTTGCCCGCCGGGCATGGACCCCGAAGTGTTTGCGCAGCTGCCCGC
CGAGATGCAGCAAGAGGTGATCCGGGAGCACCGTAGCACAATGGGGAGCA
TGGAGGACCAGGCGGAGCTGCTGGAAGCGGCCGGGCTCGACCCCGAAGCT
CTTGCAGCTCTGCCCCCCGACATGCGGCAGGAGGTTCTTGAGCAGGAGGC
TCGCAACCGCCGCATGAGAGCGGCATCCAGCGGCGGCGGCGGCGGCGGCG
GCGGCGGCGGCGGAGGCAGCGGCGCGGGGGGCCCGGCGGACCCGTCCCAC
GCTGAGGAGATGGACAACGCTTCCATCGTGGCCACGCTGCCGCCGGAGGT
CCGCCGCGACGTCCTGCTGACCGCAGACGAGGCGCTGCTGGGCACGCTGC
CGCCGAACCTGGTGGCGGAGGCCATGGTCCTCCGGGAGCGCATACCGCAC
CAGGCGGAGTTCCAGGCGGCCCAGGCGGCGCAAGTGGCCGGCTACGCATC
CCGCGTGCGGGCCGGGACCGGGGCCGGCGGCGCGGCGAGGGGCTCCGCAG
CCGCCGGCATGGTTTGCCCGCCGGGCATGGACCCCGAAGTGTTTGCGCAG
CTGCCCGCCGAGATGCAGCAAGAGGTGATCCGGGAGCACCGTAGCACAAT
GGGGAGCATGGAGGACCAGGCGGAGCTGCTGGAAGCGGCCGGGCTCGACC
CCGAAGCTCTTGCAGCTCTGCCCCCCGACATGCGGCAGGAGGTTCTTGAG
CAGGAGGCTCGCAACCGCCGCATGAGAGCGGCATCCAGCGGCGGCGGCGG
CGGCGGCGGCGGCGGCGGCGGAGGCAGCGGCGCGGGGGGCCCGGCGGACC
CGTCCCACGCTGAGGAGATGGACAACGCTTCCATCGTGGCCACGCTGCCG
CCGGAGGTCCGCCGCGACGTCCTGCTGACCGCAGACGAGGCGCTGCTGGG
CACGCTGCCGCCGAACCTGGTGGCGGAGGCCATGGTCCTCCGGGAGCGCA
TACCGCACCAGGCGGAGTTCCAGGCGGCCCAGGCGGCGCAAGTGGCCGGC
TACGCATCCCGCGTGCGGGCCGGGACCGGGGCCGGCGGCGCGGCGAGGGG
CTCCGCAGCCGCCGGCGTCGCGGAGGCGAAGAATGCCCACGAGGGGGAGT
GGAAGCTGGAGGCGGACCTCAAGGGCTCGGACACCGTGCCCCCCCGCGTG
CCGCGGGAGACGCTGGTGATGCTAATCCGCCTGCTGCACCTGCTGACCCC
CATCCGGCCCCACCGCCTCCTCCAGCGCACGGTGCTCAACCTGTGCGCCG
GGCACCCCGCCGTCAGGCGGGCGGTCGTCCAGGCGCTAGTGCACCTGATC
AAGTCCGACGTCGCGGAGGCGAAGAATGCCCACGAGGGGGAGTGGAAGCT
GGAGGCGGACCTCAAGGGCTCGGACACCGTGCCCCCCCGCGTGCCGCGGG
AGACGCTGGTGATGCTAATCCGCCTGCTGCACCTGCTGACCCCCATCCGG
CCCCACCGCCTCCTCCAGCGCACGGTGCTCAACCTGTGCGCCGGGCACCC
CGCCGTCAGGCGGGCGGTCGTCCAGGCGCTAGTGCACCTGATCAAGTCCG
AC
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