mRNA_L-elsbetiae_contig1069.648.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1069.648.1 vs. uniprot
Match: A0A6H5KW91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW91_9PHAE) HSP 1 Score: 348 bits (894), Expect = 2.660e-112 Identity = 183/300 (61.00%), Postives = 214/300 (71.33%), Query Frame = 1 Query: 649 TFSKAXXXXXXXXXXXXXXXSFSSFCERPFPFTNESALPCVELPTGEDRQNGVGAFYDEEGCALEQQSRSIVGCNLGGVANCRLCVFNRALFSQEILGGEEVPFVNCPCCVPDTYQMGGDIDCDFLFSSAPVSAXXXXXXXXXXXXXXXXXXPGATTAPLEAGDRAVDVGTPAPSVSPATLAPTIPPIPTEPCEIGAGGDTTGNSTVCVDVASPLDWENGIGTFYERGCAGLGCGIAGFADCRQCIFDDAAYAASGGTDALVECPCCVPITYKLRPEDSECIWPATPAPVSLAGSGASRP 1548 TFSKA XXXXXXXXXXX + SFCERP+PF NES + CVE+ T +DR NGVGAFYDE GCA Q VGC+LGGV +CRLCVF+RAL+SQ IL GEEVPFV+CPCCVP+ Y +GGDIDCDF+ S+AP+ XXX G T++PL + V T AP + I EPCE+G GDTTG+ST+CVD+AS LD NGIGT+YE C GLGC IAG DCRQCIFD+ AYAASGGTDALVECPCCVP+ Y+LRP+ SEC WPATP P+++ GSG SRP Sbjct: 107 TFSKAPTPXXXXXXXXXXXFPYYSFCERPYPFANESDILCVEMATDQDRANGVGAFYDELGCAGAQSGTGFVGCSLGGVPSCRLCVFHRALYSQTILNGEEVPFVDCPCCVPEVYGVGGDIDCDFVTSAAPIPVPAATPSPTMAPQXXXTMVSGVTSSPLVEDEARGGVATLAPVMXXXXXXXXXXTIAMEPCEVGVAGDTTGDSTLCVDIASTLDLANGIGTYYEANCEGLGCDIAGNVDCRQCIFDETAYAASGGTDALVECPCCVPVIYQLRPDSSECTWPATPTPITVEGSGGSRP 406
BLAST of mRNA_L-elsbetiae_contig1069.648.1 vs. uniprot
Match: D8LN92_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN92_ECTSI) HSP 1 Score: 320 bits (821), Expect = 1.940e-103 Identity = 170/259 (65.64%), Postives = 200/259 (77.22%), Query Frame = 1 Query: 775 LPTGEDRQNGVGAFYDEEGCALEQQSRSIVGCNLGGVANCRLCVFNRALFSQEILGGEEVPFVNCPCCVPDTYQMGGDIDCDFLFSSAPVSAXXXXXXXXXXXXXXXXXXPGATTAPLEAGDRAVDVGTPAPSVSPATLAPTIPP-IPTEPCEIGAGGDTTGNSTVCVDVASPLDWENGIGTFYERGCAGLGCGIAGFADCRQCIFDDAAYAASGGTDALVECPCCVPITYKLRPEDSECIWPATPAPVSLAGSGASRP 1548 + T DR NGVGAFYDE GCA Q VGC+LG V NCRLCVF+RAL+SQ IL GEEVPFV+CPCCVP+ Y++GGDIDCDF+ S+ P+ XXXXXXXXXXXXXXXPG T+AP + +V V T A V T APT P I EPCE+G GDTTG+ST+CVD++SP+D NGIGT+YE C GLGC IAG DCRQCIFD+ AYAASGGTDALVECPCCVP++Y+LRP+ SEC WPATP+P+++ GSG SRP Sbjct: 1 MATDADRANGVGAFYDELGCAGAQSGTGFVGCSLGDVPNCRLCVFHRALYSQNILEGEEVPFVDCPCCVPEVYEVGGDIDCDFVASAPPIPVPAAXXXXXXXXXXXXXXXPGVTSAPPAEDEASVGVATLA-XVMAVTPAPTAAPVIAMEPCEVGVAGDTTGDSTLCVDISSPVDLANGIGTYYEANCEGLGCDIAGNEDCRQCIFDETAYAASGGTDALVECPCCVPVSYQLRPDSSECTWPATPSPINVEGSGGSRP 258
BLAST of mRNA_L-elsbetiae_contig1069.648.1 vs. uniprot
Match: D8LDL0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDL0_ECTSI) HSP 1 Score: 312 bits (800), Expect = 8.460e-100 Identity = 153/266 (57.52%), Postives = 185/266 (69.55%), Query Frame = 1 Query: 724 CERPFPFTNESALPCVELPTGEDRQNGVGAFYDEEGCALEQQSRSIVGCNLGGVANCRLCVFNRALFSQEILGGEEVPFVNCPCCVPDTYQMGGDIDCDFLFSSAPVSAXXXXXXXXXXXXXXXXXXPGATTAPLEAGDRAVDVGTPAPSVSPATLAPTIPPIPTEPCEIGAGGDTTGNSTVCVDVASPLDWENGIGTFYERGCAGLGCGIAGFADCRQCIFDDAAYAASGGTDALVECPCCVPITYKLRPEDSECIWPATPAPVS 1521 CERP+ ++NES +PCV++ T D+ +G GAFYDEEGC + +S S+VGC GGV NCRLCVFNR LFS+ ILGGEEVPFV+CPCCVPDTY+MGGDIDC+F +SS PVSA XXXXX G T + TLAPTI P EPCE AGG+++ + +CVD+AS +DW++GIGT+YE GC G+GC IAG DCRQC+FD AYA SGG L CPCCVPITYKLRPE SEC+WP TP+P + Sbjct: 39 CERPYTWSNESEIPCVDMVTAVDKASGAGAFYDEEGCGPDAESISVVGCAHGGVGNCRLCVFNRGLFSETILGGEEVPFVDCPCCVPDTYEMGGDIDCEFAYSSPPVSAPTPVSVEGNASTPXXXXXEGDTNS---------------------TLAPTI---PMEPCETSAGGNSS--ALLCVDIASAVDWDDGIGTYYESGCQGVGCDIAGHVDCRQCVFDSEAYATSGGNLELAACPCCVPITYKLRPEGSECVWPPTPSPTA 278 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1069.648.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1069.648.1 >prot_L-elsbetiae_contig1069.648.1 ID=prot_L-elsbetiae_contig1069.648.1|Name=mRNA_L-elsbetiae_contig1069.648.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=516bp ERTADRKWRSTPPEHAVLHFIMCLSRFEILDIRLSSASWITSGRDAAATTback to top mRNA from alignment at L-elsbetiae_contig1069:19286..25533+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1069.648.1 ID=mRNA_L-elsbetiae_contig1069.648.1|Name=mRNA_L-elsbetiae_contig1069.648.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6248bp|location=Sequence derived from alignment at L-elsbetiae_contig1069:19286..25533+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1069:19286..25533+ >mRNA_L-elsbetiae_contig1069.648.1 ID=mRNA_L-elsbetiae_contig1069.648.1|Name=mRNA_L-elsbetiae_contig1069.648.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3096bp|location=Sequence derived from alignment at L-elsbetiae_contig1069:19286..25533+ (Laminarionema elsbetiae ELsaHSoW15)back to top |