mRNA_L-elsbetiae_contig10547.537.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10547.537.1
Unique NamemRNA_L-elsbetiae_contig10547.537.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10547.537.1 vs. uniprot
Match: D7FMA2_ECTSI (Ribonucleoside-diphosphate reductase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMA2_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 2.230e-18
Identity = 59/80 (73.75%), Postives = 63/80 (78.75%), Query Frame = 1 
Query:  214 MARRRRATCAVVGMLAATSVAATGPSAPLPGWTGYPQHPR-APAHENAAARDASAAAARGWARSQSSRLREKERRLEAGE 450
            M RRRRATCAVVGMLA+TSV ATGP +    WTGYPQ PR AP  E+  ARDASAAAARGWARSQSSRLRE   R+EA E
Sbjct:    1 MVRRRRATCAVVGMLASTSVVATGPPS---AWTGYPQQPRGAPPQESDGARDASAAAARGWARSQSSRLREGAPRMEAEE 77
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10547.537.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FMA2_ECTSI2.230e-1873.75Ribonucleoside-diphosphate reductase n=2 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10547contigL-elsbetiae_contig10547:760..1965 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.7
Seed ortholog evalue3.3e-17
Seed eggNOG ortholog2880.D7FMA2
Preferred nameRNR1
KEGG rclassRC00613,RC01003
KEGG koko:K10807
KEGG ReactionR02017,R02019,R02024,R08363,R08364,R11893
KEGG Pathwayko00230,ko00240,ko00480,ko00983,ko01100,map00230,map00240,map00480,map00983,map01100
KEGG ModuleM00053
Hectar predicted targeting categorysignal peptide
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004550,GO:0004748,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005829,GO:0005971,GO:0006139,GO:0006165,GO:0006213,GO:0006220,GO:0006221,GO:0006235,GO:0006240,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009165,GO:0009185,GO:0009186,GO:0009189,GO:0009193,GO:0009196,GO:0009197,GO:0009200,GO:0009202,GO:0009211,GO:0009212,GO:0009218,GO:0009219,GO:0009221,GO:0009259,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0016301,GO:0016310,GO:0016491,GO:0016725,GO:0016728,GO:0016740,GO:0016772,GO:0016776,GO:0017076,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019692,GO:0019693,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0046062,GO:0046075,GO:0046131,GO:0046385,GO:0046483,GO:0046704,GO:0046939,GO:0051063,GO:0055086,GO:0055114,GO:0061731,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1902494,GO:1990204
EggNOG free text desc.ribonucleoside-diphosphate reductase activity
EggNOG OGsCOG0209@1,KOG1112@2759
EC1.17.4.1
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03400
Ec32 ortholog descriptionRibonucleotide reductase, class I , alpha subunit
Ec32 orthologEc-17_003700.2
Exons2
Model size603
Cds size390
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10547.537.1prot_L-elsbetiae_contig10547.537.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10547 973..1965 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815278.3657136-UTR-L-elsbetiae_contig10547:759..9721622815278.3657136-UTR-L-elsbetiae_contig10547:759..972Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10547 760..972 +
1691682812.8840322-UTR-L-elsbetiae_contig10547:759..9721691682812.8840322-UTR-L-elsbetiae_contig10547:759..972Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10547 760..972 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815278.3782797-CDS-L-elsbetiae_contig10547:972..10831622815278.3782797-CDS-L-elsbetiae_contig10547:972..1083Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10547 973..1083 +
1691682812.896602-CDS-L-elsbetiae_contig10547:972..10831691682812.896602-CDS-L-elsbetiae_contig10547:972..1083Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10547 973..1083 +
1622815278.3894987-CDS-L-elsbetiae_contig10547:1686..19651622815278.3894987-CDS-L-elsbetiae_contig10547:1686..1965Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10547 1687..1965 +
1691682812.9080865-CDS-L-elsbetiae_contig10547:1686..19651691682812.9080865-CDS-L-elsbetiae_contig10547:1686..1965Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10547 1687..1965 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10547.537.1

>prot_L-elsbetiae_contig10547.537.1 ID=prot_L-elsbetiae_contig10547.537.1|Name=mRNA_L-elsbetiae_contig10547.537.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=130bp
MARRRRATCAVVGMLAATSVAATGPSAPLPGWTGYPQHPRAPAHENAAAR
DASAAAARGWARSQSSRLREKERRLEAGEAPSAASQPQSSAVAGGGHGGV
VGGGVDVRGAALRDGNPRNLAGGGGVAVEG
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mRNA from alignment at L-elsbetiae_contig10547:760..1965+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10547.537.1 ID=mRNA_L-elsbetiae_contig10547.537.1|Name=mRNA_L-elsbetiae_contig10547.537.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1206bp|location=Sequence derived from alignment at L-elsbetiae_contig10547:760..1965+ (Laminarionema elsbetiae ELsaHSoW15)
GCGGAGCCCCCACTAGTTTGATGAAGGCACAAACACAGGGCAGAGAGAGA
GTGAGAGCAAGCACGAGAGACAGAGAGAGGCTTCAAACAGACAGGAGTTC
AACGAAAATTCACCAGGTTGAACCTGTGTAAGAGGCCTGCGTTGTGATCG
CTATACATACGGCGCACCACCAACTGCTGCGGCCGTACGGCCACCGCACG
TGGCTTCTAGGAGATGGCTAGACGGAGAAGAGCGACATGTGCCGTGGTTG
GTATGCTAGCCGCCACATCTGTGGCGGCCACTGGACCATCAGCACCGCTG
CCAGGATGGACTGGGTATCCACAGGTACAGAGAGATCCACCGCTGCCACC
CAGTTTTTTCAAACGCGAACAGCAACAAGTAGAGGTTCGGGGTGTGGTAC
ATATCTACGCGCGCGAGGGACACCACCCCTGCTGCGGCTTGTGCGTAGCG
TGATTACACAGAGTCCAATCACGACCGTCATCGATCGATCGATCATGTAG
ACACGCTTCCAGTTCTCTGTGTGCGAACCACAGATTGGGTTTGCTCGCTG
GTGCGGCCCGTTCGGATAGAGATAACTCCTATTAGACTACATGACACGTG
GTGGCAGTTGGGCCTCTGCTGCCAGCCAGTAAACGATGCTCCAGTTGGAA
GTATCGATCTGGGCGCGATGAATACCGGTTGCCCCCAGCGCAGATTAGCG
ACAGACAGTAGTGTGTGTGTGTGAAACTTTTTCGGCGGGGTATTTTCTCT
CGTTGAAGTCCTCCTCATGAAAAGAGGCGTCTGGTCTTATTCCACCGCCG
CGCCGGTCGTCTCGGCACTGGAAACCCCGTTCGCCATCCACCTTCAGTTC
TCCCACTCTTTGTAACTACACGGTGGTTGCCCCCTGATGTCCCGCACCCC
TCCTCCCACACTCCGCCCGTCTCTCAGCACCCCCGCGCCCCGGCCCACGA
GAACGCCGCCGCTCGTGACGCGTCTGCAGCGGCGGCGAGGGGCTGGGCCC
GCAGCCAATCGTCCCGGTTACGAGAGAAGGAGCGGCGCCTGGAGGCCGGG
GAGGCCCCCTCTGCGGCGTCGCAGCCGCAGAGTAGCGCTGTCGCTGGAGG
CGGCCACGGCGGGGTGGTCGGCGGTGGCGTAGACGTTAGGGGAGCCGCTC
TCCGTGACGGGAACCCGAGAAATTTAGCGGGCGGGGGCGGGGTAGCTGTA
GAAGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10547:760..1965+

>mRNA_L-elsbetiae_contig10547.537.1 ID=mRNA_L-elsbetiae_contig10547.537.1|Name=mRNA_L-elsbetiae_contig10547.537.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=780bp|location=Sequence derived from alignment at L-elsbetiae_contig10547:760..1965+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTAGACGGAGAAGAGCGACATGTGCCGTGGTTGGTATGCTAGCCGC
CACATCTGTGGCGGCCACTGGACCATCAGCACCGCTGCCAGGATGGACTG
GGTATCCACAGATGGCTAGACGGAGAAGAGCGACATGTGCCGTGGTTGGT
ATGCTAGCCGCCACATCTGTGGCGGCCACTGGACCATCAGCACCGCTGCC
AGGATGGACTGGGTATCCACAGCACCCCCGCGCCCCGGCCCACGAGAACG
CCGCCGCTCGTGACGCGTCTGCAGCGGCGGCGAGGGGCTGGGCCCGCAGC
CAATCGTCCCGGTTACGAGAGAAGGAGCGGCGCCTGGAGGCCGGGGAGGC
CCCCTCTGCGGCGTCGCAGCCGCAGAGTAGCGCTGTCGCTGGAGGCGGCC
ACGGCGGGGTGGTCGGCGGTGGCGTAGACGTTAGGGGAGCCGCTCTCCGT
GACGGGAACCCGAGAAATTTAGCGGGCGGGGGCGGGGTAGCTGTAGAAGG
GCACCCCCGCGCCCCGGCCCACGAGAACGCCGCCGCTCGTGACGCGTCTG
CAGCGGCGGCGAGGGGCTGGGCCCGCAGCCAATCGTCCCGGTTACGAGAG
AAGGAGCGGCGCCTGGAGGCCGGGGAGGCCCCCTCTGCGGCGTCGCAGCC
GCAGAGTAGCGCTGTCGCTGGAGGCGGCCACGGCGGGGTGGTCGGCGGTG
GCGTAGACGTTAGGGGAGCCGCTCTCCGTGACGGGAACCCGAGAAATTTA
GCGGGCGGGGGCGGGGTAGCTGTAGAAGGG
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