prot_L-elsbetiae_contig10547.537.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig10547.537.1
Unique Nameprot_L-elsbetiae_contig10547.537.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length130
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig10547.537.1 vs. uniprot
Match: D7FMA2_ECTSI (Ribonucleoside-diphosphate reductase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMA2_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 2.220e-19
Identity = 59/80 (73.75%), Postives = 63/80 (78.75%), Query Frame = 0 
Query:    1 MARRRRATCAVVGMLAATSVAATGPSAPLPGWTGYPQHPR-APAHENAAARDASAAAARGWARSQSSRLREKERRLEAGE 79
            M RRRRATCAVVGMLA+TSV ATGP +    WTGYPQ PR AP  E+  ARDASAAAARGWARSQSSRLRE   R+EA E
Sbjct:    1 MVRRRRATCAVVGMLASTSVVATGPPS---AWTGYPQQPRGAPPQESDGARDASAAAARGWARSQSSRLREGAPRMEAEE 77
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10547.537.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FMA2_ECTSI2.220e-1973.75Ribonucleoside-diphosphate reductase n=2 Tax=Ectoc... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..22
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 23..130
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..17
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..22
score: 0.677

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10547contigL-elsbetiae_contig10547:973..1965 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10547.537.1mRNA_L-elsbetiae_contig10547.537.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig10547 760..1965 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig10547.537.1 ID=prot_L-elsbetiae_contig10547.537.1|Name=mRNA_L-elsbetiae_contig10547.537.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=130bp
MARRRRATCAVVGMLAATSVAATGPSAPLPGWTGYPQHPRAPAHENAAAR
DASAAAARGWARSQSSRLREKERRLEAGEAPSAASQPQSSAVAGGGHGGV
VGGGVDVRGAALRDGNPRNLAGGGGVAVEG
back to top