mRNA_L-elsbetiae_contig10527.519.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10527.519.1
Unique NamemRNA_L-elsbetiae_contig10527.519.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10527.519.1 vs. uniprot
Match: D8LJ04_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ04_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 8.870e-25
Identity = 63/133 (47.37%), Postives = 80/133 (60.15%), Query Frame = 1 
Query:    1 MATMFSKRASLATATLLLVLYLAVTNLN---RALLGTGHSENHSAVPVSPEEGLAAARTAAGRDGRGGAGEEWMESWGHDIGFRPGVKLPNTGRTRASWEGVRSDSGSRSPFYGDLQRRHQDWLLRRAEEIRS 390
            MA   S +A++A    LL++ L +T LN   RALL      +    P+           AA   GRG AG+ W ESWG ++G RPGV+LPN GR++  W GVR DSG RSP YG +QR HQ WLL+RAEE+RS
Sbjct:    1 MARRRSNQAAVAATASLLLVGLGLTALNPRNRALLPMVQDSSGGHRPLQESR-------AAAVGGRGEAGQAWPESWGREVGLRPGVRLPNQGRSKVGWAGVRDDSGWRSPHYGKIQRGHQAWLLQRAEEMRS 126
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10527.519.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJ04_ECTSI8.870e-2547.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10527contigL-elsbetiae_contig10527:3208..4614 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size417
Cds size417
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815276.850938-CDS-L-elsbetiae_contig10527:3207..33441622815276.850938-CDS-L-elsbetiae_contig10527:3207..3344Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10527 3208..3344 -
1691682811.909346-CDS-L-elsbetiae_contig10527:3207..33441691682811.909346-CDS-L-elsbetiae_contig10527:3207..3344Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10527 3208..3344 -
1622815276.8600953-CDS-L-elsbetiae_contig10527:4334..46141622815276.8600953-CDS-L-elsbetiae_contig10527:4334..4614Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10527 4335..4614 -
1691682811.9193585-CDS-L-elsbetiae_contig10527:4334..46141691682811.9193585-CDS-L-elsbetiae_contig10527:4334..4614Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10527 4335..4614 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10527.519.1prot_L-elsbetiae_contig10527.519.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10527 3208..4614 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10527.519.1

>prot_L-elsbetiae_contig10527.519.1 ID=prot_L-elsbetiae_contig10527.519.1|Name=mRNA_L-elsbetiae_contig10527.519.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=139bp
MATMFSKRASLATATLLLVLYLAVTNLNRALLGTGHSENHSAVPVSPEEG
LAAARTAAGRDGRGGAGEEWMESWGHDIGFRPGVKLPNTGRTRASWEGVR
SDSGSRSPFYGDLQRRHQDWLLRRAEEIRSGNNDGGIGG
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mRNA from alignment at L-elsbetiae_contig10527:3208..4614-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10527.519.1 ID=mRNA_L-elsbetiae_contig10527.519.1|Name=mRNA_L-elsbetiae_contig10527.519.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1407bp|location=Sequence derived from alignment at L-elsbetiae_contig10527:3208..4614- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGACGATGTTTTCAAAGCGAGCCTCCCTCGCGACGGCGACACTGCT
TCTCGTGCTATACCTAGCGGTCACCAACCTCAACAGAGCGCTCCTAGGCA
CAGGCCACAGTGAGAACCATTCTGCGGTTCCTGTCTCTCCCGAAGAAGGC
CTGGCCGCAGCGCGGACAGCAGCAGGGCGTGATGGTAGAGGAGGGGCGGG
GGAGGAATGGATGGAATCTTGGGGGCACGACATCGGTTTCAGACCGGGAG
TAAAGCTACCCAACACTGGACGAACACGAGGTACGGGAGACCACTGAGCA
GGCCGCAGCAGTGCGTGGGAAGCGAGAGGTTGTGTGTACTTGTGCACGTT
TGCTGCCGAAGCTTTCGATAAATTCGCTGCATGGCCGGCTTTGGTTGCTA
TCCATTGCCAAGTCGCCACACGGGGGCGAACCATACGGACACGCCGCGAT
TGCGCGGCCCCCCTTCGTGGGTTCCCTGTGGGCGTAAGAGGCCAACACAT
TGCTGCCGTTGTTGACGTTTTCACAGTGGTGTGCGTCCGAGATGTTTGGG
GGCTATTATAAGCTGATTGTGCAAGCGAGCGGCCCATAGCAGTATTGAGT
CTCGCATCGACACGGGACAAGGCGTTTCTCTCAGTCTCCCCCCACAACGC
AGAGGAGCTCGGGAGTCTTTGATAACTCCGGCGACCAACTCAATTATTTC
GAGATGTGTTTATTTTTGTCTGTATTGAAAGCGCTTGGTGGATCTATGTA
GAGTCCCTTGTATTCTAACGTTTTAGTCACTCGCTTGTCCTTGTATCTGG
AAACCTCGAGCGTGTTTGCGGTACGCGGGAGGAAAAGAGATGGTTGTAGG
TGCTGACGGTTGGTTCGCCAAATGTGGCTGCAGCAGTCCCTAGCTACACA
TGTGCCTGTATTGCAGGACGGTCGGTTCTTAAGTCGTCGTTGAGTCATGC
TGCCCTTGCATCGGGCATCAAGGTTACCAGCAGGTAACTAACTCTCTCAC
TACAGAAGTTAGAGATACGCGACTTGCGCCATGGGAACGTGGTGACACTG
CGGTCGCAACCATGTACTTGTATAGAAGTATGTTTGCATCAACGTTATAC
ATCAACAACATCAACTATTTTCAAACGCCACGCTGCACGGAGTGTTATAT
TTTGTCACGACTTTACTTCGAAGAACATGTTTACCAACACCAGCACCGAA
CACGTCCCGGTGGTGTGTGATCTAAAACCCGGCCCCGTGCGCGCCGTAAC
TTGAACGCCCATCGCTGCAGCTAGCTGGGAGGGTGTTCGGTCCGACTCCG
GCTCGCGATCTCCTTTCTACGGTGACCTCCAGCGACGGCACCAAGATTGG
CTCCTGCGACGGGCGGAGGAGATACGATCCGGCAACAACGACGGCGGCAT
TGGTGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10527:3208..4614-

>mRNA_L-elsbetiae_contig10527.519.1 ID=mRNA_L-elsbetiae_contig10527.519.1|Name=mRNA_L-elsbetiae_contig10527.519.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=834bp|location=Sequence derived from alignment at L-elsbetiae_contig10527:3208..4614- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGACGATGTTTTCAAAGCGAGCCTCCCTCGCGACGGCGACACTGCT
TCTCGTGCTATACCTAGCGGTCACCAACCTCAACAGAGCGCTCCTAGGCA
CAGGCCACAGTGAGAACCATTCTGCGGTTCCTGTCTCTCCCGAAGAAGGC
CTGGCCGCAGCGCGGACAGCAGCAGGGCGTGATGGTAGAGGAGGGGCGGG
GGAGGAATGGATGGAATCTTGGGGGCACGACATCGGTTTCAGACCGGGAG
TAAAGCTACCCAACACTGGACGAACACGAGATGGCGACGATGTTTTCAAA
GCGAGCCTCCCTCGCGACGGCGACACTGCTTCTCGTGCTATACCTAGCGG
TCACCAACCTCAACAGAGCGCTCCTAGGCACAGGCCACAGTGAGAACCAT
TCTGCGGTTCCTGTCTCTCCCGAAGAAGGCCTGGCCGCAGCGCGGACAGC
AGCAGGGCGTGATGGTAGAGGAGGGGCGGGGGAGGAATGGATGGAATCTT
GGGGGCACGACATCGGTTTCAGACCGGGAGTAAAGCTACCCAACACTGGA
CGAACACGAGCTAGCTGGGAGGGTGTTCGGTCCGACTCCGGCTCGCGATC
TCCTTTCTACGGTGACCTCCAGCGACGGCACCAAGATTGGCTCCTGCGAC
GGGCGGAGGAGATACGATCCGGCAACAACGACGGCGGCATTGGTGGGCTA
GCTGGGAGGGTGTTCGGTCCGACTCCGGCTCGCGATCTCCTTTCTACGGT
GACCTCCAGCGACGGCACCAAGATTGGCTCCTGCGACGGGCGGAGGAGAT
ACGATCCGGCAACAACGACGGCGGCATTGGTGGG
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