mRNA_L-elsbetiae_contig10527.518.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10527.518.1
Unique NamemRNA_L-elsbetiae_contig10527.518.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10527.518.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10527contigL-elsbetiae_contig10527:2508..3144 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size638
Cds size636
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815276.8134487-CDS-L-elsbetiae_contig10527:2507..31431622815276.8134487-CDS-L-elsbetiae_contig10527:2507..3143Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10527 2508..3143 +
1691682811.901033-CDS-L-elsbetiae_contig10527:2507..31431691682811.901033-CDS-L-elsbetiae_contig10527:2507..3143Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10527 2508..3143 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10527.518.1prot_L-elsbetiae_contig10527.518.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10527 2508..3143 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10527.518.1

>prot_L-elsbetiae_contig10527.518.1 ID=prot_L-elsbetiae_contig10527.518.1|Name=mRNA_L-elsbetiae_contig10527.518.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=212bp
CRSIAPPHAPAAGCAPRSWSPWLAPLRAETTPTPIPPQPSSFLSRFLLLL
LLLLLLLLIMVVVVRFPPWPNSPHLPTPARGPPHAAPSGPIVVVVVVAVV
VRVDASSDVALFPAPDCRSHRQPQPRHRDKHPQWPPEGHPDPRSQPPRFL
RRDSCRAPPPSILSPSPQSPPIRHHHLPRTAFPLPGHRSLLGLFPLRALL
PLLSYRFLLGRL
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mRNA from alignment at L-elsbetiae_contig10527:2508..3144+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10527.518.1 ID=mRNA_L-elsbetiae_contig10527.518.1|Name=mRNA_L-elsbetiae_contig10527.518.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=637bp|location=Sequence derived from alignment at L-elsbetiae_contig10527:2508..3144+ (Laminarionema elsbetiae ELsaHSoW15)
TGCCGCTCCATAGCTCCGCCCCACGCTCCAGCCGCCGGATGCGCTCCTCG
TTCTTGGTCACCGTGGCTGGCTCCTCTGCGCGCCGAGACCACCCCCACCC
CGATCCCCCCGCAGCCGTCCTCCTTCTTGTCGCGGTTCCTGCTGCTGCTC
CTGCTGCTGCTCCTGCTCCTGCTGATAATGGTGGTGGTGGTGCGCTTCCC
CCCTTGGCCAAACTCTCCCCATCTTCCGACGCCAGCGAGGGGGCCGCCTC
ACGCCGCCCCGTCCGGCCCCATCGTCGTCGTCGTCGTCGTTGCTGTGGTT
GTTCGTGTTGACGCCTCCTCAGATGTCGCCTTGTTCCCGGCTCCGGATTG
CCGTTCGCACCGCCAGCCGCAGCCGCGCCACCGGGATAAGCATCCTCAGT
GGCCGCCCGAGGGACATCCCGATCCGCGCTCTCAACCTCCCCGCTTTCTG
CGTCGAGATTCCTGCCGGGCCCCGCCGCCGAGTATACTTTCGCCCAGTCC
TCAGAGTCCACCGATTCGGCACCACCACCTCCCTCGTACCGCGTTCCCAC
TACCTGGCCACCGTAGCCTTCTCGGCCTCTTCCCTCTTCGTGCTCTACTG
CCGTTGTTATCGTACCGATTTCTTCTCGGGCGTCTTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10527:2508..3144+

>mRNA_L-elsbetiae_contig10527.518.1 ID=mRNA_L-elsbetiae_contig10527.518.1|Name=mRNA_L-elsbetiae_contig10527.518.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1272bp|location=Sequence derived from alignment at L-elsbetiae_contig10527:2508..3144+ (Laminarionema elsbetiae ELsaHSoW15)
TGCCGCTCCATAGCTCCGCCCCACGCTCCAGCCGCCGGATGCGCTCCTCG
TTCTTGGTCACCGTGGCTGGCTCCTCTGCGCGCCGAGACCACCCCCACCC
CGATCCCCCCGCAGCCGTCCTCCTTCTTGTCGCGGTTCCTGCTGCTGCTC
CTGCTGCTGCTCCTGCTCCTGCTGATAATGGTGGTGGTGGTGCGCTTCCC
CCCTTGGCCAAACTCTCCCCATCTTCCGACGCCAGCGAGGGGGCCGCCTC
ACGCCGCCCCGTCCGGCCCCATCGTCGTCGTCGTCGTCGTTGCTGTGGTT
GTTCGTGTTGACGCCTCCTCAGATGTCGCCTTGTTCCCGGCTCCGGATTG
CCGTTCGCACCGCCAGCCGCAGCCGCGCCACCGGGATAAGCATCCTCAGT
GGCCGCCCGAGGGACATCCCGATCCGCGCTCTCAACCTCCCCGCTTTCTG
CGTCGAGATTCCTGCCGGGCCCCGCCGCCGAGTATACTTTCGCCCAGTCC
TCAGAGTCCACCGATTCGGCACCACCACCTCCCTCGTACCGCGTTCCCAC
TACCTGGCCACCGTAGCCTTCTCGGCCTCTTCCCTCTTCGTGCTCTACTG
CCGTTGTTATCGTACCGATTTCTTCTCGGGCGTCTTTGCCGCTCCATAGC
TCCGCCCCACGCTCCAGCCGCCGGATGCGCTCCTCGTTCTTGGTCACCGT
GGCTGGCTCCTCTGCGCGCCGAGACCACCCCCACCCCGATCCCCCCGCAG
CCGTCCTCCTTCTTGTCGCGGTTCCTGCTGCTGCTCCTGCTGCTGCTCCT
GCTCCTGCTGATAATGGTGGTGGTGGTGCGCTTCCCCCCTTGGCCAAACT
CTCCCCATCTTCCGACGCCAGCGAGGGGGCCGCCTCACGCCGCCCCGTCC
GGCCCCATCGTCGTCGTCGTCGTCGTTGCTGTGGTTGTTCGTGTTGACGC
CTCCTCAGATGTCGCCTTGTTCCCGGCTCCGGATTGCCGTTCGCACCGCC
AGCCGCAGCCGCGCCACCGGGATAAGCATCCTCAGTGGCCGCCCGAGGGA
CATCCCGATCCGCGCTCTCAACCTCCCCGCTTTCTGCGTCGAGATTCCTG
CCGGGCCCCGCCGCCGAGTATACTTTCGCCCAGTCCTCAGAGTCCACCGA
TTCGGCACCACCACCTCCCTCGTACCGCGTTCCCACTACCTGGCCACCGT
AGCCTTCTCGGCCTCTTCCCTCTTCGTGCTCTACTGCCGTTGTTATCGTA
CCGATTTCTTCTCGGGCGTCTT
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