mRNA_L-elsbetiae_contig1049.480.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1049.480.1 vs. uniprot
Match: D7FLL8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLL8_ECTSI) HSP 1 Score: 162 bits (410), Expect = 5.400e-44 Identity = 101/195 (51.79%), Postives = 111/195 (56.92%), Query Frame = 1 Query: 1 LVVGATHPQASHHRRPTTRPDEFRVQNGAQHTVASLLGLGLSVWFARAVSGDAGSASGSRVWGWYLALTLVHLLANYAAMRTLALRSLNPTRASLLVTE--------------------------------------AKHREFP----------------TPGVLSPFAAARRERIIMLPGWVRAFKPWGDFLQV 423 + GAT + H + +NGAQHTVASLLGLGLSVWFARAVS GSASGSRVWGWY LTLVHLLANYAAMRTLALRSLNPTRASLLVTE + R+ P + VLSPFAAARRERI++LPGW RA KPWGDFLQ+ Sbjct: 336 VAGGATGAAITEHWAIDNNIADIGAKNGAQHTVASLLGLGLSVWFARAVS-VGGSASGSRVWGWYAVLTLVHLLANYAAMRTLALRSLNPTRASLLVTEYLGQALGSTEGRSGTRGSEQXXXXXXXXXXXXXXXXXGGEERKGPALDWMGRIRDQGSPPESVAVLSPFAAARRERILVLPGWFRALKPWGDFLQI 529
BLAST of mRNA_L-elsbetiae_contig1049.480.1 vs. uniprot
Match: I2CQ01_NANGC (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQ01_NANGC) HSP 1 Score: 89.4 bits (220), Expect = 1.420e-19 Identity = 58/145 (40.00%), Postives = 74/145 (51.03%), Query Frame = 1 Query: 1 LVVGATHPQASHHRRPTTRPDEFRVQNGAQHTVASLLGLGLSVWFARAVSGDAGSASGSRVWGWYLALTLVHLLANYAAMRTLALRSLNPTRASLLVTEAKHREFPTPGVLSPFAAARRERIIMLPGWVRAFKPWGDFLQVMRRQ 435 + GA++ H T E + GAQHT SL GLG +WFAR + S RVW Y LT++HL ANYAAMR LA S+N R ++L+T + VLSP ARRE II+ G R K W Q +R+ Sbjct: 2 IAAGASNGNIVEHMARTNNLAEVLAKGGAQHTAVSLFGLGFRMWFARVAN-----QSPRRVWTAYTLLTVIHLTANYAAMRVLAFTSINRRRLNVLLTAFRENA----SVLSPAEVARRETIIVDVGRWRPPKLWTALFQKGKRR 137
BLAST of mRNA_L-elsbetiae_contig1049.480.1 vs. uniprot
Match: W7U3D2_9STRA (Uncharacterized protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U3D2_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 4.150e-18 Identity = 58/145 (40.00%), Postives = 74/145 (51.03%), Query Frame = 1 Query: 1 LVVGATHPQASHHRRPTTRPDEFRVQNGAQHTVASLLGLGLSVWFARAVSGDAGSASGSRVWGWYLALTLVHLLANYAAMRTLALRSLNPTRASLLVTEAKHREFPTPGVLSPFAAARRERIIMLPGWVRAFKPWGDFLQVMRRQ 435 + GA++ H T E + GAQHT SL GLG +WFAR + S RVW Y LT++HL ANYAAMR LA S+N R ++L+T + VLSP ARRE II+ G R K W Q +R+ Sbjct: 268 IAAGASNGNIVEHMARTNNLAEVLAKGGAQHTAVSLFGLGFGMWFARVAN-----QSPRRVWTAYTLLTVIHLTANYAAMRVLAFTSINRRRLNVLLTAFRENA----SVLSPAEVARRETIIVDVGRWRPPKLWTALFQKGKRR 403
BLAST of mRNA_L-elsbetiae_contig1049.480.1 vs. uniprot
Match: A0A0D9VR67_9ORYZ (Uncharacterized protein n=1 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9VR67_9ORYZ) HSP 1 Score: 63.9 bits (154), Expect = 3.710e-9 Identity = 42/128 (32.81%), Postives = 68/128 (53.12%), Query Frame = 1 Query: 1 LVVGATHPQASHHRRPTTRPDEFRVQNGAQHTVASLLGLGLSVWFARAVSGDAGSASGSRVWGWYLALTLVHLLANYAAMRTLALRSLNPTRASLLVTEAKHREFPTPGVLSPFAAARRERIIMLPGW 384 + GAT + H + + G+Q T+A++LG+GL + A G A VW +L+LT+ H+ ANY A+++L+L +LN R+S+L+ H GVL+P +++E I LP W Sbjct: 135 VASGATRAALTQHFALANNAADISAKEGSQETLATMLGMGLGMLLAHVTRGHA-----LGVWVSFLSLTIFHMYANYKAVQSLSLTTLNYERSSILL----HYFMENGGVLTPQQVSKQEHI--LPFW 251
BLAST of mRNA_L-elsbetiae_contig1049.480.1 vs. uniprot
Match: B6TVK3_MAIZE (Uncharacterized protein n=1 Tax=Zea mays TaxID=4577 RepID=B6TVK3_MAIZE) HSP 1 Score: 63.5 bits (153), Expect = 5.500e-9 Identity = 43/128 (33.59%), Postives = 68/128 (53.12%), Query Frame = 1 Query: 1 LVVGATHPQASHHRRPTTRPDEFRVQNGAQHTVASLLGLGLSVWFARAVSGDAGSASGSRVWGWYLALTLVHLLANYAAMRTLALRSLNPTRASLLVTEAKHREFPTPGVLSPFAAARRERIIMLPGW 384 + GAT + H + + G+Q T+A++LG+GL + A+ G A S VW +L+LT+ H+ ANY A+++L+L +LN RAS+L+ K VL P +++E I LP W Sbjct: 189 VASGATRAALTQHFALANNATDISAKEGSQETLATMLGMGLGMLLAQITRGHALS-----VWASFLSLTMFHMYANYKAVQSLSLTTLNYERASILLQYFKE----CGEVLVPRKVSQQEHI--LPSW 305
BLAST of mRNA_L-elsbetiae_contig1049.480.1 vs. uniprot
Match: B4F9L0_MAIZE (Retrovirus-related Pol polyprotein LINE-1 n=4 Tax=Andropogoneae TaxID=147429 RepID=B4F9L0_MAIZE) HSP 1 Score: 63.2 bits (152), Expect = 7.490e-9 Identity = 43/128 (33.59%), Postives = 68/128 (53.12%), Query Frame = 1 Query: 1 LVVGATHPQASHHRRPTTRPDEFRVQNGAQHTVASLLGLGLSVWFARAVSGDAGSASGSRVWGWYLALTLVHLLANYAAMRTLALRSLNPTRASLLVTEAKHREFPTPGVLSPFAAARRERIIMLPGW 384 + GAT + H + + G+Q T+A++LG+GL + A+ G A S VW +L+LT+ H+ ANY A+++L+L +LN RAS+L+ K VL P +++E I LP W Sbjct: 189 VASGATRAALTQHFALANNAADISAKEGSQETLATMLGMGLGMLLAQITRGHALS-----VWASFLSLTMFHMYANYKAVQSLSLTTLNYERASILLQYFKE----CGEVLVPRKVSQQEHI--LPSW 305
BLAST of mRNA_L-elsbetiae_contig1049.480.1 vs. uniprot
Match: A0A1D6PH61_MAIZE (Retrovirus-related Pol polyprotein LINE-1 n=2 Tax=Zea mays TaxID=4577 RepID=A0A1D6PH61_MAIZE) HSP 1 Score: 63.2 bits (152), Expect = 8.320e-9 Identity = 43/128 (33.59%), Postives = 68/128 (53.12%), Query Frame = 1 Query: 1 LVVGATHPQASHHRRPTTRPDEFRVQNGAQHTVASLLGLGLSVWFARAVSGDAGSASGSRVWGWYLALTLVHLLANYAAMRTLALRSLNPTRASLLVTEAKHREFPTPGVLSPFAAARRERIIMLPGW 384 + GAT + H + + G+Q T+A++LG+GL + A+ G A S VW +L+LT+ H+ ANY A+++L+L +LN RAS+L+ K VL P +++E I LP W Sbjct: 557 VASGATRAALTQHFALANNAADISAKEGSQETLATMLGMGLGMLLAQITRGHALS-----VWASFLSLTMFHMYANYKAVQSLSLTTLNYERASILLQYFKE----CGEVLVPRKVSQQEHI--LPSW 673
BLAST of mRNA_L-elsbetiae_contig1049.480.1 vs. uniprot
Match: A0A0K9RS85_SPIOL (Uncharacterized protein n=5 Tax=Chenopodioideae TaxID=1307796 RepID=A0A0K9RS85_SPIOL) HSP 1 Score: 62.8 bits (151), Expect = 1.010e-8 Identity = 43/137 (31.39%), Postives = 67/137 (48.91%), Query Frame = 1 Query: 1 LVVGATHPQASHHRRPTTRPDEFRVQNGAQHTVASLLGLGLSVWFARAVSGDAGSASGSRVWGWYLALTLVHLLANYAAMRTLALRSLNPTRASLLVTEAKHREFPTPGVLSPFAAARRERIIMLPGWVRAFKPWGD 411 + GAT + H + + G+Q TVA++ G+ L ++ A G + +W +L LT+VH+ ANY A+R L+L++LN R+SLL+ T VLSP + E + LP W+ PW Sbjct: 178 VASGATRAALTQHFALQDNAADISAKEGSQETVATMAGMALGMFLAHVTRGHS-----MAIWFSFLCLTMVHIYANYKAVRCLSLKALNGERSSLLLQHFMK----TGQVLSPEKVSMEEHV--LPLWLN---PWSS 300
BLAST of mRNA_L-elsbetiae_contig1049.480.1 vs. uniprot
Match: UPI0014454D83 (protein root UVB sensitive 3 isoform X2 n=1 Tax=Nicotiana tomentosiformis TaxID=4098 RepID=UPI0014454D83) HSP 1 Score: 62.4 bits (150), Expect = 1.240e-8 Identity = 40/137 (29.20%), Postives = 71/137 (51.82%), Query Frame = 1 Query: 1 LVVGATHPQASHHRRPTTRPDEFRVQNGAQHTVASLLGLGLSVWFARAVSGDAGSASGSRVWGWYLALTLVHLLANYAAMRTLALRSLNPTRASLLVTEAKHREFPTPGVLSPFAAARRERIIMLPGWVRAFKPWGD 411 + GAT + H + + G+Q T+A++ G+ L + A SG + + +W +L+LT+ H+ ANY A+R+L+L +LN R S+++++ F T VLSP + E + LP W+ ++ G Sbjct: 190 VASGATRAALTQHFALQNNAADIAAKEGSQETLATMFGMALGMLLAHITSGHSFA-----IWISFLSLTMFHMFANYMAVRSLSLNTLNCERCSIVLSQF----FKTGQVLSPKQVSSMEHV--LPSWLSSWTSKGS 315
BLAST of mRNA_L-elsbetiae_contig1049.480.1 vs. uniprot
Match: A0A1S3ZBH8_TOBAC (protein root UVB sensitive 3-like n=9 Tax=Nicotiana TaxID=4085 RepID=A0A1S3ZBH8_TOBAC) HSP 1 Score: 62.4 bits (150), Expect = 1.390e-8 Identity = 40/137 (29.20%), Postives = 71/137 (51.82%), Query Frame = 1 Query: 1 LVVGATHPQASHHRRPTTRPDEFRVQNGAQHTVASLLGLGLSVWFARAVSGDAGSASGSRVWGWYLALTLVHLLANYAAMRTLALRSLNPTRASLLVTEAKHREFPTPGVLSPFAAARRERIIMLPGWVRAFKPWGD 411 + GAT + H + + G+Q T+A++ G+ L + A SG + + +W +L+LT+ H+ ANY A+R+L+L +LN R S+++++ F T VLSP + E + LP W+ ++ G Sbjct: 190 VASGATRAALTQHFALQNNAADIAAKEGSQETLATMFGMALGMLLAHITSGHSFA-----IWISFLSLTMFHMFANYMAVRSLSLNTLNCERCSIVLSQF----FKTGQVLSPKQVSSMEHV--LPSWLSSWTSKGS 315 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1049.480.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1049.480.1 >prot_L-elsbetiae_contig1049.480.1 ID=prot_L-elsbetiae_contig1049.480.1|Name=mRNA_L-elsbetiae_contig1049.480.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=145bp LVVGATHPQASHHRRPTTRPDEFRVQNGAQHTVASLLGLGLSVWFARAVSback to top mRNA from alignment at L-elsbetiae_contig1049:1175..2349+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1049.480.1 ID=mRNA_L-elsbetiae_contig1049.480.1|Name=mRNA_L-elsbetiae_contig1049.480.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1175bp|location=Sequence derived from alignment at L-elsbetiae_contig1049:1175..2349+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1049:1175..2349+ >mRNA_L-elsbetiae_contig1049.480.1 ID=mRNA_L-elsbetiae_contig1049.480.1|Name=mRNA_L-elsbetiae_contig1049.480.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=870bp|location=Sequence derived from alignment at L-elsbetiae_contig1049:1175..2349+ (Laminarionema elsbetiae ELsaHSoW15)back to top |