mRNA_L-elsbetiae_contig1049.480.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1049.480.1
Unique NamemRNA_L-elsbetiae_contig1049.480.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1049.480.1 vs. uniprot
Match: D7FLL8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLL8_ECTSI)

HSP 1 Score: 162 bits (410), Expect = 5.400e-44
Identity = 101/195 (51.79%), Postives = 111/195 (56.92%), Query Frame = 1
Query:    1 LVVGATHPQASHHRRPTTRPDEFRVQNGAQHTVASLLGLGLSVWFARAVSGDAGSASGSRVWGWYLALTLVHLLANYAAMRTLALRSLNPTRASLLVTE--------------------------------------AKHREFP----------------TPGVLSPFAAARRERIIMLPGWVRAFKPWGDFLQV 423
            +  GAT    + H        +   +NGAQHTVASLLGLGLSVWFARAVS   GSASGSRVWGWY  LTLVHLLANYAAMRTLALRSLNPTRASLLVTE                                       + R+ P                +  VLSPFAAARRERI++LPGW RA KPWGDFLQ+
Sbjct:  336 VAGGATGAAITEHWAIDNNIADIGAKNGAQHTVASLLGLGLSVWFARAVS-VGGSASGSRVWGWYAVLTLVHLLANYAAMRTLALRSLNPTRASLLVTEYLGQALGSTEGRSGTRGSEQXXXXXXXXXXXXXXXXXGGEERKGPALDWMGRIRDQGSPPESVAVLSPFAAARRERILVLPGWFRALKPWGDFLQI 529          
BLAST of mRNA_L-elsbetiae_contig1049.480.1 vs. uniprot
Match: I2CQ01_NANGC (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQ01_NANGC)

HSP 1 Score: 89.4 bits (220), Expect = 1.420e-19
Identity = 58/145 (40.00%), Postives = 74/145 (51.03%), Query Frame = 1
Query:    1 LVVGATHPQASHHRRPTTRPDEFRVQNGAQHTVASLLGLGLSVWFARAVSGDAGSASGSRVWGWYLALTLVHLLANYAAMRTLALRSLNPTRASLLVTEAKHREFPTPGVLSPFAAARRERIIMLPGWVRAFKPWGDFLQVMRRQ 435
            +  GA++     H   T    E   + GAQHT  SL GLG  +WFAR  +      S  RVW  Y  LT++HL ANYAAMR LA  S+N  R ++L+T  +        VLSP   ARRE II+  G  R  K W    Q  +R+
Sbjct:    2 IAAGASNGNIVEHMARTNNLAEVLAKGGAQHTAVSLFGLGFRMWFARVAN-----QSPRRVWTAYTLLTVIHLTANYAAMRVLAFTSINRRRLNVLLTAFRENA----SVLSPAEVARRETIIVDVGRWRPPKLWTALFQKGKRR 137          
BLAST of mRNA_L-elsbetiae_contig1049.480.1 vs. uniprot
Match: W7U3D2_9STRA (Uncharacterized protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U3D2_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 4.150e-18
Identity = 58/145 (40.00%), Postives = 74/145 (51.03%), Query Frame = 1
Query:    1 LVVGATHPQASHHRRPTTRPDEFRVQNGAQHTVASLLGLGLSVWFARAVSGDAGSASGSRVWGWYLALTLVHLLANYAAMRTLALRSLNPTRASLLVTEAKHREFPTPGVLSPFAAARRERIIMLPGWVRAFKPWGDFLQVMRRQ 435
            +  GA++     H   T    E   + GAQHT  SL GLG  +WFAR  +      S  RVW  Y  LT++HL ANYAAMR LA  S+N  R ++L+T  +        VLSP   ARRE II+  G  R  K W    Q  +R+
Sbjct:  268 IAAGASNGNIVEHMARTNNLAEVLAKGGAQHTAVSLFGLGFGMWFARVAN-----QSPRRVWTAYTLLTVIHLTANYAAMRVLAFTSINRRRLNVLLTAFRENA----SVLSPAEVARRETIIVDVGRWRPPKLWTALFQKGKRR 403          
BLAST of mRNA_L-elsbetiae_contig1049.480.1 vs. uniprot
Match: A0A0D9VR67_9ORYZ (Uncharacterized protein n=1 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9VR67_9ORYZ)

HSP 1 Score: 63.9 bits (154), Expect = 3.710e-9
Identity = 42/128 (32.81%), Postives = 68/128 (53.12%), Query Frame = 1
Query:    1 LVVGATHPQASHHRRPTTRPDEFRVQNGAQHTVASLLGLGLSVWFARAVSGDAGSASGSRVWGWYLALTLVHLLANYAAMRTLALRSLNPTRASLLVTEAKHREFPTPGVLSPFAAARRERIIMLPGW 384
            +  GAT    + H        +   + G+Q T+A++LG+GL +  A    G A       VW  +L+LT+ H+ ANY A+++L+L +LN  R+S+L+    H      GVL+P   +++E I  LP W
Sbjct:  135 VASGATRAALTQHFALANNAADISAKEGSQETLATMLGMGLGMLLAHVTRGHA-----LGVWVSFLSLTIFHMYANYKAVQSLSLTTLNYERSSILL----HYFMENGGVLTPQQVSKQEHI--LPFW 251          
BLAST of mRNA_L-elsbetiae_contig1049.480.1 vs. uniprot
Match: B6TVK3_MAIZE (Uncharacterized protein n=1 Tax=Zea mays TaxID=4577 RepID=B6TVK3_MAIZE)

HSP 1 Score: 63.5 bits (153), Expect = 5.500e-9
Identity = 43/128 (33.59%), Postives = 68/128 (53.12%), Query Frame = 1
Query:    1 LVVGATHPQASHHRRPTTRPDEFRVQNGAQHTVASLLGLGLSVWFARAVSGDAGSASGSRVWGWYLALTLVHLLANYAAMRTLALRSLNPTRASLLVTEAKHREFPTPGVLSPFAAARRERIIMLPGW 384
            +  GAT    + H        +   + G+Q T+A++LG+GL +  A+   G A S     VW  +L+LT+ H+ ANY A+++L+L +LN  RAS+L+   K        VL P   +++E I  LP W
Sbjct:  189 VASGATRAALTQHFALANNATDISAKEGSQETLATMLGMGLGMLLAQITRGHALS-----VWASFLSLTMFHMYANYKAVQSLSLTTLNYERASILLQYFKE----CGEVLVPRKVSQQEHI--LPSW 305          
BLAST of mRNA_L-elsbetiae_contig1049.480.1 vs. uniprot
Match: B4F9L0_MAIZE (Retrovirus-related Pol polyprotein LINE-1 n=4 Tax=Andropogoneae TaxID=147429 RepID=B4F9L0_MAIZE)

HSP 1 Score: 63.2 bits (152), Expect = 7.490e-9
Identity = 43/128 (33.59%), Postives = 68/128 (53.12%), Query Frame = 1
Query:    1 LVVGATHPQASHHRRPTTRPDEFRVQNGAQHTVASLLGLGLSVWFARAVSGDAGSASGSRVWGWYLALTLVHLLANYAAMRTLALRSLNPTRASLLVTEAKHREFPTPGVLSPFAAARRERIIMLPGW 384
            +  GAT    + H        +   + G+Q T+A++LG+GL +  A+   G A S     VW  +L+LT+ H+ ANY A+++L+L +LN  RAS+L+   K        VL P   +++E I  LP W
Sbjct:  189 VASGATRAALTQHFALANNAADISAKEGSQETLATMLGMGLGMLLAQITRGHALS-----VWASFLSLTMFHMYANYKAVQSLSLTTLNYERASILLQYFKE----CGEVLVPRKVSQQEHI--LPSW 305          
BLAST of mRNA_L-elsbetiae_contig1049.480.1 vs. uniprot
Match: A0A1D6PH61_MAIZE (Retrovirus-related Pol polyprotein LINE-1 n=2 Tax=Zea mays TaxID=4577 RepID=A0A1D6PH61_MAIZE)

HSP 1 Score: 63.2 bits (152), Expect = 8.320e-9
Identity = 43/128 (33.59%), Postives = 68/128 (53.12%), Query Frame = 1
Query:    1 LVVGATHPQASHHRRPTTRPDEFRVQNGAQHTVASLLGLGLSVWFARAVSGDAGSASGSRVWGWYLALTLVHLLANYAAMRTLALRSLNPTRASLLVTEAKHREFPTPGVLSPFAAARRERIIMLPGW 384
            +  GAT    + H        +   + G+Q T+A++LG+GL +  A+   G A S     VW  +L+LT+ H+ ANY A+++L+L +LN  RAS+L+   K        VL P   +++E I  LP W
Sbjct:  557 VASGATRAALTQHFALANNAADISAKEGSQETLATMLGMGLGMLLAQITRGHALS-----VWASFLSLTMFHMYANYKAVQSLSLTTLNYERASILLQYFKE----CGEVLVPRKVSQQEHI--LPSW 673          
BLAST of mRNA_L-elsbetiae_contig1049.480.1 vs. uniprot
Match: A0A0K9RS85_SPIOL (Uncharacterized protein n=5 Tax=Chenopodioideae TaxID=1307796 RepID=A0A0K9RS85_SPIOL)

HSP 1 Score: 62.8 bits (151), Expect = 1.010e-8
Identity = 43/137 (31.39%), Postives = 67/137 (48.91%), Query Frame = 1
Query:    1 LVVGATHPQASHHRRPTTRPDEFRVQNGAQHTVASLLGLGLSVWFARAVSGDAGSASGSRVWGWYLALTLVHLLANYAAMRTLALRSLNPTRASLLVTEAKHREFPTPGVLSPFAAARRERIIMLPGWVRAFKPWGD 411
            +  GAT    + H        +   + G+Q TVA++ G+ L ++ A    G +       +W  +L LT+VH+ ANY A+R L+L++LN  R+SLL+         T  VLSP   +  E +  LP W+    PW  
Sbjct:  178 VASGATRAALTQHFALQDNAADISAKEGSQETVATMAGMALGMFLAHVTRGHS-----MAIWFSFLCLTMVHIYANYKAVRCLSLKALNGERSSLLLQHFMK----TGQVLSPEKVSMEEHV--LPLWLN---PWSS 300          
BLAST of mRNA_L-elsbetiae_contig1049.480.1 vs. uniprot
Match: UPI0014454D83 (protein root UVB sensitive 3 isoform X2 n=1 Tax=Nicotiana tomentosiformis TaxID=4098 RepID=UPI0014454D83)

HSP 1 Score: 62.4 bits (150), Expect = 1.240e-8
Identity = 40/137 (29.20%), Postives = 71/137 (51.82%), Query Frame = 1
Query:    1 LVVGATHPQASHHRRPTTRPDEFRVQNGAQHTVASLLGLGLSVWFARAVSGDAGSASGSRVWGWYLALTLVHLLANYAAMRTLALRSLNPTRASLLVTEAKHREFPTPGVLSPFAAARRERIIMLPGWVRAFKPWGD 411
            +  GAT    + H        +   + G+Q T+A++ G+ L +  A   SG + +     +W  +L+LT+ H+ ANY A+R+L+L +LN  R S+++++     F T  VLSP   +  E +  LP W+ ++   G 
Sbjct:  190 VASGATRAALTQHFALQNNAADIAAKEGSQETLATMFGMALGMLLAHITSGHSFA-----IWISFLSLTMFHMFANYMAVRSLSLNTLNCERCSIVLSQF----FKTGQVLSPKQVSSMEHV--LPSWLSSWTSKGS 315          
BLAST of mRNA_L-elsbetiae_contig1049.480.1 vs. uniprot
Match: A0A1S3ZBH8_TOBAC (protein root UVB sensitive 3-like n=9 Tax=Nicotiana TaxID=4085 RepID=A0A1S3ZBH8_TOBAC)

HSP 1 Score: 62.4 bits (150), Expect = 1.390e-8
Identity = 40/137 (29.20%), Postives = 71/137 (51.82%), Query Frame = 1
Query:    1 LVVGATHPQASHHRRPTTRPDEFRVQNGAQHTVASLLGLGLSVWFARAVSGDAGSASGSRVWGWYLALTLVHLLANYAAMRTLALRSLNPTRASLLVTEAKHREFPTPGVLSPFAAARRERIIMLPGWVRAFKPWGD 411
            +  GAT    + H        +   + G+Q T+A++ G+ L +  A   SG + +     +W  +L+LT+ H+ ANY A+R+L+L +LN  R S+++++     F T  VLSP   +  E +  LP W+ ++   G 
Sbjct:  190 VASGATRAALTQHFALQNNAADIAAKEGSQETLATMFGMALGMLLAHITSGHSFA-----IWISFLSLTMFHMFANYMAVRSLSLNTLNCERCSIVLSQF----FKTGQVLSPKQVSSMEHV--LPSWLSSWTSKGS 315          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1049.480.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLL8_ECTSI5.400e-4451.79Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
I2CQ01_NANGC1.420e-1940.00Uncharacterized protein (Fragment) n=1 Tax=Nannoch... [more]
W7U3D2_9STRA4.150e-1840.00Uncharacterized protein n=2 Tax=Nannochloropsis ga... [more]
A0A0D9VR67_9ORYZ3.710e-932.81Uncharacterized protein n=1 Tax=Leersia perrieri T... [more]
B6TVK3_MAIZE5.500e-933.59Uncharacterized protein n=1 Tax=Zea mays TaxID=457... [more]
B4F9L0_MAIZE7.490e-933.59Retrovirus-related Pol polyprotein LINE-1 n=4 Tax=... [more]
A0A1D6PH61_MAIZE8.320e-933.59Retrovirus-related Pol polyprotein LINE-1 n=2 Tax=... [more]
A0A0K9RS85_SPIOL1.010e-831.39Uncharacterized protein n=5 Tax=Chenopodioideae Ta... [more]
UPI0014454D831.240e-829.20protein root UVB sensitive 3 isoform X2 n=1 Tax=Ni... [more]
A0A1S3ZBH8_TOBAC1.390e-829.20protein root UVB sensitive 3-like n=9 Tax=Nicotian... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1049contigL-elsbetiae_contig1049:1175..2349 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score164.5
Seed ortholog evalue3.8e-38
Seed eggNOG ortholog2880.D7FLL8
Preferred nameC16orf58
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to UV-B
EggNOG OGsKOG4249@1,KOG4249@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size435
Cds size435
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815272.634878-CDS-L-elsbetiae_contig1049:1174..14701622815272.634878-CDS-L-elsbetiae_contig1049:1174..1470Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1049 1175..1470 +
1691682809.484787-CDS-L-elsbetiae_contig1049:1174..14701691682809.484787-CDS-L-elsbetiae_contig1049:1174..1470Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1049 1175..1470 +
1622815272.647136-CDS-L-elsbetiae_contig1049:2210..23491622815272.647136-CDS-L-elsbetiae_contig1049:2210..2349Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1049 2211..2349 +
1691682809.498989-CDS-L-elsbetiae_contig1049:2210..23491691682809.498989-CDS-L-elsbetiae_contig1049:2210..2349Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1049 2211..2349 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1049.480.1prot_L-elsbetiae_contig1049.480.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1049 1175..2349 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1049.480.1

>prot_L-elsbetiae_contig1049.480.1 ID=prot_L-elsbetiae_contig1049.480.1|Name=mRNA_L-elsbetiae_contig1049.480.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=145bp
LVVGATHPQASHHRRPTTRPDEFRVQNGAQHTVASLLGLGLSVWFARAVS
GDAGSASGSRVWGWYLALTLVHLLANYAAMRTLALRSLNPTRASLLVTEA
KHREFPTPGVLSPFAAARRERIIMLPGWVRAFKPWGDFLQVMRRQ
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mRNA from alignment at L-elsbetiae_contig1049:1175..2349+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1049.480.1 ID=mRNA_L-elsbetiae_contig1049.480.1|Name=mRNA_L-elsbetiae_contig1049.480.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1175bp|location=Sequence derived from alignment at L-elsbetiae_contig1049:1175..2349+ (Laminarionema elsbetiae ELsaHSoW15)
TTGGTCGTCGGAGCAACCCACCCCCAAGCTTCCCACCACCGCCGGCCCAC CACACGACCTGATGAATTCCGTGTTCAGAACGGCGCGCAGCACACGGTCG CCTCCCTGCTAGGGCTCGGTCTCTCGGTGTGGTTCGCGAGAGCCGTCAGC GGCGACGCGGGCTCCGCCTCCGGATCGCGCGTCTGGGGCTGGTACCTCGC CCTCACGCTGGTCCACCTGCTCGCCAACTACGCGGCGATGAGGACGCTGG CGCTGAGATCCCTGAACCCGACACGCGCTTCGTTGCTCGTCACGGAGTAC CTGGGGCAGGTGCGGTGCGGGGAAGAGAGGGAGACAAGAACACGAACGAG TTGATGCTTTCTTTGGGTTTTGTAGACGCGGTTCACGGTGGTGGTGGTGG TGGTGGTGGTGGTGGCGTCGTTGTGTGTATCGTCGTGGGAACACAGCAGC TCAGGCTTGTTTTCCGCCGTCTCCTCGGAGGTGAGCAGGTGCAGAGTGGG TGCCTCAAGCGAGCAGCTCCAAGTGAGCCATCTCGGAGACTTGGATGTGG CTTGCGTCGGCATCTTTTCGGTCGCCTTTGAGCCTTGTCTGTCGGTGGAC TAGCCGACGGGACAGAGAGGAAAAGAGGTGCCCGGGTGCGCTGCTGATTT GCTGCTTTGTACAAAGCTGTCGGAGTCGATGCGCCCGCTCTTTTCAACTC AAACCCTTTCAAACCCTCTCAACGTGCGCTTTTGTTGTTTTTTTTATCGG TTGTATCTATCGGTGTCTCCTTTTTTGTGTTTGCACACCTGAAACCTGCC TTTGCGACCCCCGCTGCGGTGCTGCTGCTGGTCGACATGTCCGTTGTGCA CGACGCCAAGGCGTTCGGGTCGCCGGAGCAAAGCAGTCGAGGCGACGAGG GTCGCGAGGGGGGCGGGGAGAGCGAAGATGGTCAGCAGCAGCGGGAGGGA GAGGAGCGGGAGAAGGATGGCGGCGAAGATGACAGGGGCGAGAAGGAGCA GGACGAGGCTCCTCCGGCAGTGGACTGGATGGGGAGAGCAAAGCACCGTG AGTTTCCCACGCCGGGGGTGCTTTCGCCCTTCGCAGCGGCCAGGCGGGAG AGAATCATCATGCTGCCGGGTTGGGTGCGGGCGTTCAAGCCTTGGGGGGA CTTTCTGCAGGTGATGAGAAGACAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1049:1175..2349+

>mRNA_L-elsbetiae_contig1049.480.1 ID=mRNA_L-elsbetiae_contig1049.480.1|Name=mRNA_L-elsbetiae_contig1049.480.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=870bp|location=Sequence derived from alignment at L-elsbetiae_contig1049:1175..2349+ (Laminarionema elsbetiae ELsaHSoW15)
TTGGTCGTCGGAGCAACCCACCCCCAAGCTTCCCACCACCGCCGGCCCAC
CACACGACCTGATGAATTCCGTGTTCAGAACGGCGCGCAGCACACGGTCG
CCTCCCTGCTAGGGCTCGGTCTCTCGGTGTGGTTCGCGAGAGCCGTCAGC
GGCGACGCGGGCTCCGCCTCCGGATCGCGCGTCTGGGGCTGGTACCTCGC
CCTCACGCTGGTCCACCTGCTCGCCAACTACGCGGCGATGAGGACGCTGG
CGCTGAGATCCCTGAACCCGACACGCGCTTCGTTGCTCGTCACGGATTGG
TCGTCGGAGCAACCCACCCCCAAGCTTCCCACCACCGCCGGCCCACCACA
CGACCTGATGAATTCCGTGTTCAGAACGGCGCGCAGCACACGGTCGCCTC
CCTGCTAGGGCTCGGTCTCTCGGTGTGGTTCGCGAGAGCCGTCAGCGGCG
ACGCGGGCTCCGCCTCCGGATCGCGCGTCTGGGGCTGGTACCTCGCCCTC
ACGCTGGTCCACCTGCTCGCCAACTACGCGGCGATGAGGACGCTGGCGCT
GAGATCCCTGAACCCGACACGCGCTTCGTTGCTCGTCACGGAAGCAAAGC
ACCGTGAGTTTCCCACGCCGGGGGTGCTTTCGCCCTTCGCAGCGGCCAGG
CGGGAGAGAATCATCATGCTGCCGGGTTGGGTGCGGGCGTTCAAGCCTTG
GGGGGACTTTCTGCAGGTGATGAGAAGACAAAGCAAAGCACCGTGAGTTT
CCCACGCCGGGGGTGCTTTCGCCCTTCGCAGCGGCCAGGCGGGAGAGAAT
CATCATGCTGCCGGGTTGGGTGCGGGCGTTCAAGCCTTGGGGGGACTTTC
TGCAGGTGATGAGAAGACAA
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