mRNA_L-elsbetiae_contig10469.462.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10469.462.1
Unique NamemRNA_L-elsbetiae_contig10469.462.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10469.462.1 vs. uniprot
Match: A0A6H5KF55_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF55_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 4.000e-15
Identity = 49/98 (50.00%), Postives = 61/98 (62.24%), Query Frame = 1 
Query:    1 GEAPGS-KKRPLSAVGQSQSPEHAQQAPAGKRRLDDEGASXXXXXXXXXXXXXXXXDE-----VENVLSEDIPRRARWWNSVALVPRFVGTILDLLHE 276
            G+A GS KKRPLSA+G        ++A +GKRR+ ++GA                  +     VE+VL E++PRR RWWNSVALVPRFVGTILDLLHE
Sbjct: 1017 GDATGSSKKRPLSALGLLPPSGCRREAASGKRRVGEQGAKVPSSLSSLSSLSDDGQPQPSSADVEDVLFEEVPRRLRWWNSVALVPRFVGTILDLLHE 1114
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BLAST of mRNA_L-elsbetiae_contig10469.462.1 vs. uniprot
Match: D7FK75_ECTSI (Ubiquitin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK75_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 4.870e-14
Identity = 49/100 (49.00%), Postives = 60/100 (60.00%), Query Frame = 1 
Query:    1 GEAPGS-KKRPLSAVGQSQSPEHAQQAPAGKRRLDDEGA-------SXXXXXXXXXXXXXXXXDEVENVLSEDIPRRARWWNSVALVPRFVGTILDLLHE 276
            G+A GS KKRPLSA+G        ++A +GKRR+ ++GA       S                 +VE+VL E+ PRR RWWN VALVPRFVGTILDLLHE
Sbjct: 2669 GDAAGSSKKRPLSALGVLAPSGCRREAASGKRRVGEQGARVPSSPSSLSSVSDDGQPQVQPSSADVESVLFEEAPRRLRWWNCVALVPRFVGTILDLLHE 2768
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10469.462.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KF55_9PHAE4.000e-1550.00USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FK75_ECTSI4.870e-1449.00Ubiquitin domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10469contigL-elsbetiae_contig10469:4533..5359 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.3
Seed ortholog evalue2.7e-13
Seed eggNOG ortholog2880.D7FK75
KEGG koko:K11840,ko:K11853,ko:K11869
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsCOG5077@1,KOG1866@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Exons2
Model size276
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815270.9517791-CDS-L-elsbetiae_contig10469:4532..46671622815270.9517791-CDS-L-elsbetiae_contig10469:4532..4667Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10469 4533..4667 +
1691682808.4766655-CDS-L-elsbetiae_contig10469:4532..46671691682808.4766655-CDS-L-elsbetiae_contig10469:4532..4667Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10469 4533..4667 +
1622815270.9649148-CDS-L-elsbetiae_contig10469:5218..53591622815270.9649148-CDS-L-elsbetiae_contig10469:5218..5359Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10469 5219..5359 +
1691682808.4893425-CDS-L-elsbetiae_contig10469:5218..53591691682808.4893425-CDS-L-elsbetiae_contig10469:5218..5359Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10469 5219..5359 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10469.462.1prot_L-elsbetiae_contig10469.462.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10469 4533..5359 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10469.462.1

>prot_L-elsbetiae_contig10469.462.1 ID=prot_L-elsbetiae_contig10469.462.1|Name=mRNA_L-elsbetiae_contig10469.462.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=92bp
GEAPGSKKRPLSAVGQSQSPEHAQQAPAGKRRLDDEGASSPQDQQPEERR
QQAEDDEVENVLSEDIPRRARWWNSVALVPRFVGTILDLLHE
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mRNA from alignment at L-elsbetiae_contig10469:4533..5359+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10469.462.1 ID=mRNA_L-elsbetiae_contig10469.462.1|Name=mRNA_L-elsbetiae_contig10469.462.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=827bp|location=Sequence derived from alignment at L-elsbetiae_contig10469:4533..5359+ (Laminarionema elsbetiae ELsaHSoW15)
GGCGAAGCGCCGGGATCCAAGAAGAGGCCTCTGTCGGCGGTAGGGCAGTC
GCAGTCGCCGGAGCACGCTCAGCAGGCGCCGGCGGGAAAGCGCAGGCTCG
ATGATGAGGGGGCGTCGTCCCCCCAAGATCAGCAGGTATGTAGGTCTCGC
TTGTTTTGTGCGTTGTGCACGAATGCTGGTTTGGGGTGCAGCACGTATGG
CTCGCCGGGTGGTGGCTCGTGGCTTTGTCTGCCTTGACTCCTTTTCCACC
CGTTTCAAGAACCATAGATATGCTTAGAAGTTCATGGAAGTTAATACACA
CAGCAAACCGCACTTCGTGTGCCGCACCCACCTGGAGGAGAACGGAACCA
AACGGGAAGGAAGGGGCACCGCATCAACCCCCCCCTCCCCATTTTAGGAG
AATGCCCCCTTCCGGTTAGAAGGGGGAGTTGGCGATCAGGTCGCCTCAAG
ATGAGAACGATGAGATCAACACGCCTCAAGATGAGAACATATTTCCCGAT
GGTGACAGTCCCGCGTATCTATGTACCTTTCGGAATCATACGAGAGTCAA
CCTGCTGATGCACGGCGCACCGAACTGCCTAGTTGCTTGTTTACTCACGT
AGCTCTCGCTCAACGTGTTGACTTTTTGTCTCTGCGGTGCCCCTCTCCCC
TCGCCCACCGTGCGGGCCGGGCCGGGGCCCCTCCAGCCTGAGGAGCGGCG
GCAGCAGGCAGAGGATGATGAAGTAGAGAACGTCCTTTCCGAAGACATCC
CGCGCCGCGCAAGGTGGTGGAACTCCGTGGCCCTCGTGCCGCGCTTCGTC
GGGACCATTCTCGATCTTCTGCATGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10469:4533..5359+

>mRNA_L-elsbetiae_contig10469.462.1 ID=mRNA_L-elsbetiae_contig10469.462.1|Name=mRNA_L-elsbetiae_contig10469.462.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=552bp|location=Sequence derived from alignment at L-elsbetiae_contig10469:4533..5359+ (Laminarionema elsbetiae ELsaHSoW15)
GGCGAAGCGCCGGGATCCAAGAAGAGGCCTCTGTCGGCGGTAGGGCAGTC
GCAGTCGCCGGAGCACGCTCAGCAGGCGCCGGCGGGAAAGCGCAGGCTCG
ATGATGAGGGGGCGTCGTCCCCCCAAGATCAGCAGGGCGAAGCGCCGGGA
TCCAAGAAGAGGCCTCTGTCGGCGGTAGGGCAGTCGCAGTCGCCGGAGCA
CGCTCAGCAGGCGCCGGCGGGAAAGCGCAGGCTCGATGATGAGGGGGCGT
CGTCCCCCCAAGATCAGCAGCCTGAGGAGCGGCGGCAGCAGGCAGAGGAT
GATGAAGTAGAGAACGTCCTTTCCGAAGACATCCCGCGCCGCGCAAGGTG
GTGGAACTCCGTGGCCCTCGTGCCGCGCTTCGTCGGGACCATTCTCGATC
TTCTGCATGAGCCTGAGGAGCGGCGGCAGCAGGCAGAGGATGATGAAGTA
GAGAACGTCCTTTCCGAAGACATCCCGCGCCGCGCAAGGTGGTGGAACTC
CGTGGCCCTCGTGCCGCGCTTCGTCGGGACCATTCTCGATCTTCTGCATG
AG
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