mRNA_L-elsbetiae_contig10469.459.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10469.459.1
Unique NamemRNA_L-elsbetiae_contig10469.459.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10469.459.1 vs. uniprot
Match: D7FK75_ECTSI (Ubiquitin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK75_ECTSI)

HSP 1 Score: 184 bits (466), Expect = 2.560e-51
Identity = 88/113 (77.88%), Postives = 98/113 (86.73%), Query Frame = 1 
Query:   43 DDVDEVELSAAKVALFLALDTVARARDKDRLPQLMRYVRGWFQASPSVCRWALEQMTTNNYWQHTMLLQCSLHAVRNEFLQLCLDLVRFYAPLERHMYYEEDPAIGEHFYLAA 381
            DDVDEVELS AKVALFLALDTVARA+DK+RL QLM Y + WF++SP+VCRWALEQMT NNYWQHTMLL+CSL  VR EFL LC+DLVR YAP ERH YYEEDP+IG + YLAA
Sbjct: 2045 DDVDEVELSTAKVALFLALDTVARAKDKERLSQLMGYAKRWFRSSPTVCRWALEQMTANNYWQHTMLLRCSLQGVRFEFLHLCVDLVRSYAPYERHKYYEEDPSIGANLYLAA 2157
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BLAST of mRNA_L-elsbetiae_contig10469.459.1 vs. uniprot
Match: A0A6H5KF55_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF55_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 5.700e-43
Identity = 81/113 (71.68%), Postives = 90/113 (79.65%), Query Frame = 1 
Query:   43 DDVDEVELSAAKVALFLALDTVARARDKDRLPQLMRYVRGWFQASPSVCRWALEQMTTNNYWQHTMLLQCSLHAVRNEFLQLCLDLVRFYAPLERHMYYEEDPAIGEHFYLAA 381
            DDVDEVELS AKVALFLALDTVARA+DK+RL QLM Y + WF+ASP+        MT NNYWQHTMLL+CSL  VR EFL LC+DLVR YAP ERH YYEEDP+IG + YLAA
Sbjct:  366 DDVDEVELSTAKVALFLALDTVARAKDKERLSQLMGYAKRWFRASPT--------MTANNYWQHTMLLRCSLQGVRFEFLHLCVDLVRSYAPYERHKYYEEDPSIGANLYLAA 470
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10469.459.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FK75_ECTSI2.560e-5177.88Ubiquitin domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KF55_9PHAE5.700e-4371.68USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10469contigL-elsbetiae_contig10469:355..1281 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score184.1
Seed ortholog evalue4.1e-44
Seed eggNOG ortholog2880.D7FK75
KEGG koko:K11840,ko:K11853,ko:K11869
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsCOG5077@1,KOG1866@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Exons2
Model size387
Cds size384
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815270.9008396-CDS-L-elsbetiae_contig10469:354..5611622815270.9008396-CDS-L-elsbetiae_contig10469:354..561Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10469 355..561 +
1691682808.4430084-CDS-L-elsbetiae_contig10469:354..5611691682808.4430084-CDS-L-elsbetiae_contig10469:354..561Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10469 355..561 +
1622815270.9111829-CDS-L-elsbetiae_contig10469:1103..12801622815270.9111829-CDS-L-elsbetiae_contig10469:1103..1280Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10469 1104..1280 +
1691682808.4632628-CDS-L-elsbetiae_contig10469:1103..12801691682808.4632628-CDS-L-elsbetiae_contig10469:1103..1280Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10469 1104..1280 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10469.459.1prot_L-elsbetiae_contig10469.459.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10469 355..1280 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10469.459.1

>prot_L-elsbetiae_contig10469.459.1 ID=prot_L-elsbetiae_contig10469.459.1|Name=mRNA_L-elsbetiae_contig10469.459.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=128bp
GLDNNGDHHHHHGHDDVDEVELSAAKVALFLALDTVARARDKDRLPQLMR
YVRGWFQASPSVCRWALEQMTTNNYWQHTMLLQCSLHAVRNEFLQLCLDL
VRFYAPLERHMYYEEDPAIGEHFYLAAD
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mRNA from alignment at L-elsbetiae_contig10469:355..1281+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10469.459.1 ID=mRNA_L-elsbetiae_contig10469.459.1|Name=mRNA_L-elsbetiae_contig10469.459.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=927bp|location=Sequence derived from alignment at L-elsbetiae_contig10469:355..1281+ (Laminarionema elsbetiae ELsaHSoW15)
GGGCTTGACAACAACGGCGACCACCACCACCACCACGGTCACGACGACGT
GGACGAGGTGGAGCTTTCGGCCGCGAAGGTGGCGCTGTTTCTGGCTCTGG
ACACCGTCGCGCGTGCCAGGGACAAGGACCGGCTCCCGCAGCTGATGCGC
TACGTGAGGGGCTGGTTCCAGGCCAGCCCGTCGGTGTGCCGCTGGGCGCT
CGAGCAGGCAAGTTGTTGTTTGTTGTTGTTGTTGTTGCTGTGTTTGATTT
GGTGTTGTTGTTTGTTGTTGATTGTGGTGGTGTTGCTGTGTTTAACTGGG
TGTTGTTTGTTGTTGTTGCTGTTGCTTTTGTTGTTGCTGTTGCTGTGTTT
GGTGTTCGTGTGCTCGTCTCCCCATCACGCGACAGAAACTGCTGTTCCGA
TCTCTCTCTGCCCGGCAACTTTTGTAGAGACACAAACCCGTTGTGGTTTC
AGTGACGTACGTACGTGGGCGCCTGGCGTGGTTGCAGGTTGCTAGCAGCA
GGCTAAAACACCCGAAGAGGCGTATCATGTATGAGAGGCGGACTCAAGAG
TTGGTTCGTTCGTCCCTGCTTTTTTCTATGTCCTGCCGCCCGGCGCCCCC
GCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCTCCCCCGCCCCCGCCCCCCTCTCCCCCGGGAACCGGAAGAAAATACGC
ACGCACCCTAACCACGAACAGCCTGTGCACACCCAAACGCAACCCCCAGA
TGACCACGAACAACTACTGGCAGCACACGATGCTGCTGCAGTGCAGCCTC
CACGCGGTCCGCAACGAGTTCCTGCAGCTCTGCCTCGACCTCGTCCGCTT
CTACGCCCCGCTCGAGCGGCACATGTACTACGAGGAGGACCCGGCAATCG
GGGAGCACTTCTACCTTGCCGCCGACA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10469:355..1281+

>mRNA_L-elsbetiae_contig10469.459.1 ID=mRNA_L-elsbetiae_contig10469.459.1|Name=mRNA_L-elsbetiae_contig10469.459.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=768bp|location=Sequence derived from alignment at L-elsbetiae_contig10469:355..1281+ (Laminarionema elsbetiae ELsaHSoW15)
GGGCTTGACAACAACGGCGACCACCACCACCACCACGGTCACGACGACGT
GGACGAGGTGGAGCTTTCGGCCGCGAAGGTGGCGCTGTTTCTGGCTCTGG
ACACCGTCGCGCGTGCCAGGGACAAGGACCGGCTCCCGCAGCTGATGCGC
TACGTGAGGGGCTGGTTCCAGGCCAGCCCGTCGGTGTGCCGCTGGGCGCT
CGAGCAGGGGCTTGACAACAACGGCGACCACCACCACCACCACGGTCACG
ACGACGTGGACGAGGTGGAGCTTTCGGCCGCGAAGGTGGCGCTGTTTCTG
GCTCTGGACACCGTCGCGCGTGCCAGGGACAAGGACCGGCTCCCGCAGCT
GATGCGCTACGTGAGGGGCTGGTTCCAGGCCAGCCCGTCGGTGTGCCGCT
GGGCGCTCGAGCAGATGACCACGAACAACTACTGGCAGCACACGATGCTG
CTGCAGTGCAGCCTCCACGCGGTCCGCAACGAGTTCCTGCAGCTCTGCCT
CGACCTCGTCCGCTTCTACGCCCCGCTCGAGCGGCACATGTACTACGAGG
AGGACCCGGCAATCGGGGAGCACTTCTACCTTGCCGCCGACATGACCACG
AACAACTACTGGCAGCACACGATGCTGCTGCAGTGCAGCCTCCACGCGGT
CCGCAACGAGTTCCTGCAGCTCTGCCTCGACCTCGTCCGCTTCTACGCCC
CGCTCGAGCGGCACATGTACTACGAGGAGGACCCGGCAATCGGGGAGCAC
TTCTACCTTGCCGCCGAC
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