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Homology
BLAST of mRNA_L-elsbetiae_contig10449.443.1 vs. uniprot
Match: A0A6H5L2C4_9PHAE (Cystatin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2C4_9PHAE) HSP 1 Score: 143 bits (361), Expect = 6.820e-37 Identity = 78/156 (50.00%), Postives = 98/156 (62.82%), Query Frame = 1
Query: 121 PFLTLLLAGLSQGPVCAMADDESAAXXXXATAEAPLGKEMKPL-PGHMRPHDNRPVKSPIMPAPIVGGKMDVTGSNDQDLAEVSEFAAGILEEENSELTYVQFKAEVQVVAGMIHTLTYKGNGVDGVCKEERILVIYHRAWLKETVLKSDTTTACT 585
P L LLL+GL + + A AE + +P P ++RP D + P+ AP+VG K DVTGSND+ L+EV+EFAA L E+NSELTY+Q KAEVQVVAGM++TL Y+GN G C EER LV+Y + WL E LKSDT T CT
Sbjct: 5 PLLALLLSGLGSSVFAGETTTTTVSDKEAAAAEKRGDRPERPTRPTYLRPRDQMDGRGPVASAPLVGAKQDVTGSNDKHLSEVTEFAAKYLTEQNSELTYIQVKAEVQVVAGMMYTLHYRGNDAAGECLEERTLVVYDKPWLDERTLKSDTVTECT 160
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | signal peptide |
| Exons | 3 |
| Model size | 1585 |
| Cds size | 483 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815269.3140962-UTR-L-elsbetiae_contig10449:178..1175 | 1622815269.3140962-UTR-L-elsbetiae_contig10449:178..1175 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig10449 179..1175 - |
| 1691682807.5127954-UTR-L-elsbetiae_contig10449:178..1175 | 1691682807.5127954-UTR-L-elsbetiae_contig10449:178..1175 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig10449 179..1175 - |
| 1622815269.3577552-UTR-L-elsbetiae_contig10449:3374..3479 | 1622815269.3577552-UTR-L-elsbetiae_contig10449:3374..3479 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig10449 3375..3479 - |
| 1691682807.5509148-UTR-L-elsbetiae_contig10449:3374..3479 | 1691682807.5509148-UTR-L-elsbetiae_contig10449:3374..3479 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig10449 3375..3479 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815269.3247147-CDS-L-elsbetiae_contig10449:1175..1259 | 1622815269.3247147-CDS-L-elsbetiae_contig10449:1175..1259 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10449 1176..1259 - |
| 1691682807.5224059-CDS-L-elsbetiae_contig10449:1175..1259 | 1691682807.5224059-CDS-L-elsbetiae_contig10449:1175..1259 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10449 1176..1259 - |
| 1622815269.3377218-CDS-L-elsbetiae_contig10449:1872..2004 | 1622815269.3377218-CDS-L-elsbetiae_contig10449:1872..2004 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10449 1873..2004 - |
| 1691682807.5315974-CDS-L-elsbetiae_contig10449:1872..2004 | 1691682807.5315974-CDS-L-elsbetiae_contig10449:1872..2004 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10449 1873..2004 - |
| 1622815269.3476343-CDS-L-elsbetiae_contig10449:3107..3374 | 1622815269.3476343-CDS-L-elsbetiae_contig10449:3107..3374 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10449 3108..3374 - |
| 1691682807.5410514-CDS-L-elsbetiae_contig10449:3107..3374 | 1691682807.5410514-CDS-L-elsbetiae_contig10449:3107..3374 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10449 3108..3374 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig10449.443.1 >prot_L-elsbetiae_contig10449.443.1 ID=prot_L-elsbetiae_contig10449.443.1|Name=mRNA_L-elsbetiae_contig10449.443.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=161bp
MKVVVPFLTLLLAGLSQGPVCAMADDESAAAAAAATAEAPLGKEMKPLPG
HMRPHDNRPVKSPIMPAPIVGGKMDVTGSNDQDLAEVSEFAAGILEEENS
ELTYVQFKAEVQVVAGMIHTLTYKGNGVDGVCKEERILVIYHRAWLKETV
LKSDTTTACT* back to topmRNA from alignment at L-elsbetiae_contig10449:179..3479- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig10449.443.1 ID=mRNA_L-elsbetiae_contig10449.443.1|Name=mRNA_L-elsbetiae_contig10449.443.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3301bp|location=Sequence derived from alignment at L-elsbetiae_contig10449:179..3479- (Laminarionema elsbetiae ELsaHSoW15)
AGTCGTCACCACCACCACCGCCACCACCACGACAAGGAACAAGTCCCAAG
CGTTTCCGTTTCCACTGCGCGCACCTCTCAATCAAGCACTCGACACACGG
CCCAGATGAAGGTGGTTGTGCCGTTCCTGACGCTGCTTCTCGCCGGGCTA
AGCCAAGGCCCCGTTTGCGCCATGGCCGACGACGAATCGGCGGCGGCGGC
AGCAGCAGCAACAGCAGAGGCACCGCTGGGCAAGGAGATGAAACCGCTGC
CTGGGCACATGCGGCCGCACGACAACAGGCCCGTGAAAAGCCCCATCATG
CCTGCGCCTATAGTGGGCGGCAAAATGGATGTGACGGGCTCCAATGACCA
GGACCTCGCAGAAGTCAGCGAGGTGAGGACTCTCCAGGTTTTATTCCTGG
TGAAGAAGTGTTGTTTCCAGCGGTTTGGTTACACACAGCAATTTCGAGCA
CACGCACCCTTGAAAGGCCTCATTGTTTCTTCGTTCGCATGGCGAAAACA
GGTGTGATAATTTAGAACGGCGAGGCGTCTATAATCGTTAACCCCCTTAG
GGCCACAAGGCTTACATACGGGGCCACTTTTTGGCGCCAAGTGATACACC
AAACTTTTCGACCCTCTTTCACCACGCGACCCCAATTCCTACTCTGGAAT
CCCCTACTGATTGGCCCCAAGATGAATGGCCCCAAATGTCTTGGGGCCAA
TCAATAGGGATTCTAGAGTTGGAATCAGTCACAGGGGACTTGTGAGTATG
TGAGTAAGATCCAATCACAGCTCTGGAAAAATTCGAAAAGTGTTGGTGTC
GTCAGGGGGCTAAGGCACCTTTTCCTGGTCGTTTAGGAGTCGGACACATG
CATTTGTTTGACACGTCGCGATGGGATAGCTCCACGGTTCAGTTATCTTG
CCACCTGATTTTTAGGAGGGTATTTTTGCAAAAATACAAATAAAAAATGC
AAAGACAGGCGAAGAAGCACCACAACAGGCAACTGCTGTTGTTGGAGTCG
AGGAAGTGGCACGACAGCACGCCGTTCGTGCTCGTGCGCGAGCCATAATG
GCAACTACAGCACACAGCAGTTGGTTGTCTTTTCAAAATGCCGGTACGGT
GGTAGAATATCGGCCTTCTCCGAGGTCGGCCGGTTGATTCCAACCTAAAT
TCACATGTATCTGTATCTGAGCTATTTGCTTGCCCCCACCAGGTGGAAAT
CGCTCAAGGCGCGACTCCCAGCCGGCACGATCGCTGCCAAAACCTAAACC
TACAACAGCCAGTGTTACCAGTTGCAAACAGCGATTGGAGTCTCAAAACA
CAAAATATCTTGCTTCGGCGAACAATTTATTCCCCTCCGTTTTTGTTTAC
CTCGATACCTGCCGCACCCCTCACCCCGTGCCCGCCTCCGGCCCACCATC
TTGGTTTTGCTGCTGCTGCTGCTGCTGCTGCTCCCCCTGCCGTTCGCCTC
ATCTCCTGTTTTTTTCCCGAGACAGTTCGCGGCTGGCATACTCGAAGAGG
AGAACTCCGAGCTCACTTACGTCCAGTTCAAGGCCGAGGTACAGGTGGTT
GCGGGGATGATACACACGCTAACCTACAAGGGAAATGGCGTCGACGGCGT
GTGCAAGGTGAGATCGGCTGGCCCCGGCTCGCGTTTGTCTTTCGATCTGC
GAGAGTGTTGCTGCGGCTCTCCTTGGTGGACCGCGCCGTTGGCGCGCCGC
CCCCCCCCCGTCATACGTGTGTTCTTACATGTACGTGTGTGTCGCAAGGC
GTGCATGTGTGGTGTGTTTTTTGCGTAAATTACCTTTGAGTTACGTTTGT
GTTGTCGCCGTGTTTCGTACAGCGTGAACAGCTCTCGATTTCAACACGTG
TTTCGCACTACTGCTGTCTGTATTTTACTTCCGGTATCAAAATGAGCTCA
GTGTCTGGATCGGAAAAGTCGTACTTGATTTTGCAGCAGTGTTCAAACAA
CGTACAACATAGATATTCCAAGTATATATCGGGGCGAGCGCATCATTTTG
TCGAGTTAAGTCTCCGAGGCGCGCGTCGAAAAATATTGCGCTTTCCCCTT
GTTTTGTGTCCCCAGCTTTGTATTCGTTGGGTATCTCTGTTCGCAGCCGT
ATATTATTCTATTGTCTACTAACTTCCGTGTTGCTGTTCCCCTCCTGCCG
CCAATGCTTTCGTTGTCGTTGTCGTTGGTGGTGGTGGTGGTGCTGCTGCT
GCTGCTCTTTTATTATGCAGGAGGAACGAATCTTGGTGATATACCACAGA
GCATGGCTGAAAGAAACCGTGCTGAAGAGCGACACCACAACGGCGTGCAC
ATAACACCTCCTGCCGCACCACAGCAGCAGCTGACGCCGCAATTACTGTG
CCATTACTGAAGGAGCGGGTTCGAGGAGTATATGTGTGTGTGTGTGTAGG
GAGGTAGACTTGATGAACATGTCATTAATCTGCACCCCGCGTGGTTGCTT
TCGTTGAGGCGCGCGCCCGGGCAGGAACAAGCCCTTGTGGATTGCTCGCT
CTGGGGGGGGAAACGCCTCTCATGATTTGTATGTACTTTTGATGCGTAGG
GCTAGTGGCCCCATGGTGTAAGCGCACGATCGGCTGCCGTGAGTGAAGCC
CGGCTGGAGTTCTGCTCCCTTGATTTGAATCATTTTATTATATTCCAAGC
GTCTGCGCCTATGGAGTGAGGCCAGTCATATGGTGTCTGTTTCCCCCTTT
CCACTATTTAGATTGCAAGAGCCAAGGGCTGTAGTGTAAGCCAGGGTACA
TAGTAGGTGAAAAGAGGTGAAGATTCTTGTATGCACGTGCCCCACTTTTT
CGATTTTTCGCATCATAATTTTCTATTTTTGGCGTCGCTTTTTGACGATA
TGAATTGGAATACTGGTATTTGTATGCGAAGACTCGGGGTTGGTTGTAGG
AGAGATACACCTTTCAGGAAAACAAGACAGGACAAGTAGATGACACGTCT
TGGGCTGGCCGTGTTCACCCCGTCGTGTGTTTATTTTATTTCTTCTGCGT
TTCGCCCGCGTGCGTTGGGCACATATCTAGATGCTGCTCGATGTGCTGAA
TGAATGAAGCGCAGGCATGACGCCTTCGGACCCTCTTTGATAAGCCAACG
TGTATAAATAGCACGGTCCTACTTTTGAAAAGCGTCTAATAAAAATGGCA
TGGTCCAACTGCGTACATAGACTTCGGAACTCAGCTGCTCACACCAGTTA
GTTTTTTTGGGAGTTCTCCATTTGTCAAGTTTGCGTCGACAGTCGTCGGA
CACAGCGCCCTGGCTTACGTACATGGGAATTGCGTGGGTGCGGTCGCCCC
G back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig10449:179..3479- >mRNA_L-elsbetiae_contig10449.443.1 ID=mRNA_L-elsbetiae_contig10449.443.1|Name=mRNA_L-elsbetiae_contig10449.443.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=966bp|location=Sequence derived from alignment at L-elsbetiae_contig10449:179..3479- (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGGTGGTTGTGCCGTTCCTGACGCTGCTTCTCGCCGGGCTAAGCCA
AGGCCCCGTTTGCGCCATGGCCGACGACGAATCGGCGGCGGCGGCAGCAG
CAGCAACAGCAGAGGCACCGCTGGGCAAGGAGATGAAACCGCTGCCTGGG
CACATGCGGCCGCACGACAACAGGCCCGTGAAAAGCCCCATCATGCCTGC
GCCTATAGTGGGCGGCAAAATGGATGTGACGGGCTCCAATGACCAGGACC
TCGCAGAAGTCAGCGAGATGAAGGTGGTTGTGCCGTTCCTGACGCTGCTT
CTCGCCGGGCTAAGCCAAGGCCCCGTTTGCGCCATGGCCGACGACGAATC
GGCGGCGGCGGCAGCAGCAGCAACAGCAGAGGCACCGCTGGGCAAGGAGA
TGAAACCGCTGCCTGGGCACATGCGGCCGCACGACAACAGGCCCGTGAAA
AGCCCCATCATGCCTGCGCCTATAGTGGGCGGCAAAATGGATGTGACGGG
CTCCAATGACCAGGACCTCGCAGAAGTCAGCGAGTTCGCGGCTGGCATAC
TCGAAGAGGAGAACTCCGAGCTCACTTACGTCCAGTTCAAGGCCGAGGTA
CAGGTGGTTGCGGGGATGATACACACGCTAACCTACAAGGGAAATGGCGT
CGACGGCGTGTGCAAGTTCGCGGCTGGCATACTCGAAGAGGAGAACTCCG
AGCTCACTTACGTCCAGTTCAAGGCCGAGGTACAGGTGGTTGCGGGGATG
ATACACACGCTAACCTACAAGGGAAATGGCGTCGACGGCGTGTGCAAGGA
GGAACGAATCTTGGTGATATACCACAGAGCATGGCTGAAAGAAACCGTGC
TGAAGAGCGACACCACAACGGCGTGCACATAAGAGGAACGAATCTTGGTG
ATATACCACAGAGCATGGCTGAAAGAAACCGTGCTGAAGAGCGACACCAC
AACGGCGTGCACATAA back to top
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