mRNA_L-elsbetiae_contig1021.256.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1021.256.1 vs. uniprot
Match: A0A6H5KV61_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV61_9PHAE) HSP 1 Score: 114 bits (284), Expect = 3.250e-26 Identity = 69/107 (64.49%), Postives = 81/107 (75.70%), Query Frame = 2 Query: 74 GVQPHGFAQGNMAMTMGGMPSMYPS-YNPDMSIVPSGPGSHQGAVAVPEL-MDPGEVVAQSQVAVPDHMVGVILGKGGATVIDMQNQTGARIQVSQRGDYIPGTQNR 388 G+ P GFAQG+M T GM SMYPS Y +++IV QG PE+ MD G++V+Q QVA+PDH+VGVILGK GATVIDMQNQTGARIQVSQRG+YIPGT NR Sbjct: 1008 GMPPQGFAQGSMMGT--GMTSMYPSPYGGEVAIV-------QGHA--PEVVMDSGDMVSQMQVAIPDHLVGVILGKRGATVIDMQNQTGARIQVSQRGEYIPGTTNR 1103
BLAST of mRNA_L-elsbetiae_contig1021.256.1 vs. uniprot
Match: D7FM85_ECTSI (KH_dom_type_1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM85_ECTSI) HSP 1 Score: 100 bits (249), Expect = 1.970e-24 Identity = 48/60 (80.00%), Postives = 55/60 (91.67%), Query Frame = 2 Query: 221 MDPGEVVAQSQVAVPDHMVGVILGKGGATVIDMQNQTGARIQVSQRGDYIPGTQNRPVTI 400 MD G++V+Q QVA+PDH+VGVILGKGGATVIDMQNQTGARIQVSQRG+YIPGT NR V + Sbjct: 1 MDSGDMVSQMQVAIPDHLVGVILGKGGATVIDMQNQTGARIQVSQRGEYIPGTTNRAVWV 60
BLAST of mRNA_L-elsbetiae_contig1021.256.1 vs. uniprot
Match: A0A670XVA5_PSETE (KH domain-containing protein n=1 Tax=Pseudonaja textilis TaxID=8673 RepID=A0A670XVA5_PSETE) HSP 1 Score: 81.3 bits (199), Expect = 1.960e-16 Identity = 35/64 (54.69%), Postives = 53/64 (82.81%), Query Frame = 2 Query: 251 QVAVPDHMVGVILGKGGATVIDMQNQTGARIQVSQRGDYIPGTQNRPVTISGTPQAVANAQAMV 442 ++AVP+++VG ILGKGG T+++ Q TGARIQ+S++G+++PGT+NR VTI+GTP A AQ ++ Sbjct: 63 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLI 126
BLAST of mRNA_L-elsbetiae_contig1021.256.1 vs. uniprot
Match: UPI000695E587 (RNA-binding protein Nova-2 n=1 Tax=Chinchilla lanigera TaxID=34839 RepID=UPI000695E587) HSP 1 Score: 79.0 bits (193), Expect = 5.100e-16 Identity = 34/64 (53.12%), Postives = 53/64 (82.81%), Query Frame = 2 Query: 251 QVAVPDHMVGVILGKGGATVIDMQNQTGARIQVSQRGDYIPGTQNRPVTISGTPQAVANAQAMV 442 ++AVP+++VG ILGKGG T+++ Q TGARIQ+S++G+++PGT+NR VTI+G+P A AQ ++ Sbjct: 29 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLI 92
BLAST of mRNA_L-elsbetiae_contig1021.256.1 vs. uniprot
Match: A0A8C6YYB6_NOTPE (KH domain-containing protein n=1 Tax=Nothoprocta perdicaria TaxID=30464 RepID=A0A8C6YYB6_NOTPE) HSP 1 Score: 81.3 bits (199), Expect = 5.290e-16 Identity = 35/64 (54.69%), Postives = 53/64 (82.81%), Query Frame = 2 Query: 251 QVAVPDHMVGVILGKGGATVIDMQNQTGARIQVSQRGDYIPGTQNRPVTISGTPQAVANAQAMV 442 ++AVP+++VG ILGKGG T+++ Q TGARIQ+S++G+++PGT+NR VTI+GTP A AQ ++ Sbjct: 89 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLI 152
BLAST of mRNA_L-elsbetiae_contig1021.256.1 vs. uniprot
Match: A0A836CCL5_9STRA (KH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCL5_9STRA) HSP 1 Score: 78.6 bits (192), Expect = 7.390e-16 Identity = 45/82 (54.88%), Postives = 59/82 (71.95%), Query Frame = 2 Query: 254 VAVPDHMVGVILGKGGATVIDMQ----NQTGARIQVSQRGDYIPGTQNRPVTISGTPQAVANAQAMV-HNVCSQAAQSEFRQ 484 V++PD+MVG ILG+GGAT+ ++Q +GARI VSQRGD+IPGT NR VTI+G+P A AQ ++ H + QAA SE Q Sbjct: 23 VSIPDNMVGAILGRGGATINELQASGRRTSGARINVSQRGDFIPGTSNRTVTITGSPAAAQAAQFLITHRI--QAAASEAMQ 102
BLAST of mRNA_L-elsbetiae_contig1021.256.1 vs. uniprot
Match: A0A8B9CXC6_9AVES (KH domain-containing protein n=1 Tax=Anser brachyrhynchus TaxID=132585 RepID=A0A8B9CXC6_9AVES) HSP 1 Score: 79.3 bits (194), Expect = 8.350e-16 Identity = 44/97 (45.36%), Postives = 62/97 (63.92%), Query Frame = 2 Query: 191 HQGAV-----AVPELMDPGEVVAQS--------QVAVPDHMVGVILGKGGATVIDMQNQTGARIQVSQRGDYIPGTQNRPVTISGTPQAVANAQAMV 442 H GAV A PE P A+ ++AVP+++VG ILGKGG T+++ Q TGARIQ+S++GD+IPGT++R VTI+G P A AQ ++ Sbjct: 24 HHGAVGRLGAAQPEARGPQPAGARGDEGAKELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGDFIPGTRSRRVTITGPPAATQAAQYLI 120
BLAST of mRNA_L-elsbetiae_contig1021.256.1 vs. uniprot
Match: A0A6F9CUM9_9TELE (KH domain-containing protein n=3 Tax=Osteoglossocephalai TaxID=1489341 RepID=A0A6F9CUM9_9TELE) HSP 1 Score: 81.3 bits (199), Expect = 2.100e-15 Identity = 48/125 (38.40%), Postives = 76/125 (60.80%), Query Frame = 2 Query: 68 YPGVQPHGFAQGNMAMTMGGMPSMYPSYNPDMSIVPSGPGSHQGAVAVPELMDPGEVVAQSQVAVPDHMVGVILGKGGATVIDMQNQTGARIQVSQRGDYIPGTQNRPVTISGTPQAVANAQAMV 442 +P V GF+ G++A G + +P M+ +A +L D + V + +AVP+++VG ILGKGG T+++ Q TGARIQ+S++G++IPGT+NR VTI+G+P A AQ ++ Sbjct: 152 HPAVGLGGFSLGSLAAATGASNGYLNASSPLMA---------SSLLATEKLGDGAKDVVE--IAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFIPGTRNRKVTITGSPAATQAAQYLI 265
BLAST of mRNA_L-elsbetiae_contig1021.256.1 vs. uniprot
Match: A0A3Q4HM21_NEOBR (Uncharacterized protein n=1 Tax=Neolamprologus brichardi TaxID=32507 RepID=A0A3Q4HM21_NEOBR) HSP 1 Score: 79.3 bits (194), Expect = 2.980e-15 Identity = 41/93 (44.09%), Postives = 63/93 (67.74%), Query Frame = 2 Query: 224 DPGEVVAQSQVAVPDHMVGVILGKGGATVIDMQNQTGARIQVSQRGDYIPGTQNRPVTISGTPQAVANAQAMVHNVCSQA--AQSEFRQIPQP 496 DP + + +AVP+++VG ILGKGG T+++ Q TGARIQ+S++G++IPGT+NR VTI+G+ A AQ ++ + + A A+ E P P Sbjct: 87 DPQSSSSAAAIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFIPGTRNRKVTITGSQAATQAAQYLISQLQTSAWCAREEMPLTPPP 179
BLAST of mRNA_L-elsbetiae_contig1021.256.1 vs. uniprot
Match: A0A8D0GCS2_SPHPU (NOVA alternative splicing regulator 2 n=2 Tax=Sphenodon punctatus TaxID=8508 RepID=A0A8D0GCS2_SPHPU) HSP 1 Score: 81.6 bits (200), Expect = 3.610e-15 Identity = 36/64 (56.25%), Postives = 53/64 (82.81%), Query Frame = 2 Query: 251 QVAVPDHMVGVILGKGGATVIDMQNQTGARIQVSQRGDYIPGTQNRPVTISGTPQAVANAQAMV 442 ++AVP+++VG ILGKGG T+++ Q TGARIQ+S++G++IPGT+NR VTI+GTP A AQ ++ Sbjct: 298 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFIPGTRNRKVTITGTPAATQAAQYLI 361 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1021.256.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1021.256.1 >prot_L-elsbetiae_contig1021.256.1 ID=prot_L-elsbetiae_contig1021.256.1|Name=mRNA_L-elsbetiae_contig1021.256.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=156bp MMAASGMMFGYPYPGVQPHGFAQGNMAMTMGGMPSMYPSYNPDMSIVPSGback to top mRNA from alignment at L-elsbetiae_contig1021:13188..15882+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1021.256.1 ID=mRNA_L-elsbetiae_contig1021.256.1|Name=mRNA_L-elsbetiae_contig1021.256.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2695bp|location=Sequence derived from alignment at L-elsbetiae_contig1021:13188..15882+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1021:13188..15882+ >mRNA_L-elsbetiae_contig1021.256.1 ID=mRNA_L-elsbetiae_contig1021.256.1|Name=mRNA_L-elsbetiae_contig1021.256.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=936bp|location=Sequence derived from alignment at L-elsbetiae_contig1021:13188..15882+ (Laminarionema elsbetiae ELsaHSoW15)back to top |