mRNA_L-elsbetiae_contig10195.242.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig10195.242.1 vs. uniprot
Match: A0A6H5JUJ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUJ2_9PHAE) HSP 1 Score: 626 bits (1615), Expect = 8.120e-203 Identity = 397/704 (56.39%), Postives = 457/704 (64.91%), Query Frame = 1
Query: 13 GAVYLLDSRTATGGGLEIAGGLEFTGNVAGRSGGGIYIENGDLTISRDA----GEEQEEGAVGGSWVGNTAGYDXXXXXXXXXXVRVEGGSASSNRAAQRGGVLFGTGESTVVWEAGGESRNNSAAAGGSLYLSSSAVNLTDLSLVGDHTPSGPNVFLASADVRAVNVSMVAPPAVLEEATFALHIDWGSKLRAFGCGFDGWGGDAPSVVSEGSVVLDACDFSGSAAQTLVHASSXXXXXXXXXXXAMAIRNAVLGDRNFERAGFNASSLLGVGVHNCASLPGELGCAVPEECVDAENGMGVLCPSFVVAATGGLFALTN----SDASXXXXXXXXXPAVELSVVAPESSQTSEARDDSLSVFYHPDVVAKELVLRSPASAAQREEEESGMGGVGGVLWELRRTDGXXXXXXXXXXXXXXXXADVGEAADENGVFAGMSADNFTWTAVPWSGFLVRGQEVTIKLVGTPPPPRDLSTPFAVYNGEISAEFRVVSCTAEAGSSVASGAAAVESMFYYCGEGYYWDGGGCVTCVEEMATMVGHGEALDCSVPGITLDTLPLAKGYWRGDITRTLVRECLNPSACIGGRGMGTSSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----AALVYDETRYCAEGHRGAFCSVCADGYRRLSGGQPCVSCDGGWGSGVRAALLVVGVAAPVAVVALVVFLIGGLAAVSQ 2085
GAV ++DSR G GL + Y+ NGD+ + RDA G ++ GA SWVGNTAGYD V +EGG ASSN A++RGGVLFG GES V W GGES NNSAA+GG++Y+SSS NLTDL L GDHTPSG N+F A AD RAVNV+ VAP + EATFALH+D GS RAF C F+GW GD+PSV+SEG +VLD CDFSGS TLV AS A+ IRNAVLGD+NF AGFNASSLLGVG H C+SLP EL C+V EECVDAENGMGVLCPSF ATGGL +L + +D + Y+PD+V ELVLR S G GVLW L+RTDG A DE G F G + D FTWTAVPWSG+LVRGQEVTI+LVGTPPPP D S FAVYNGE++AEFRVV+ TA A S+ AS AA VE FYYC G YWDG CVTC + MATM +LDCS PGITLDTLPLA+GYWRGDIT+T +R+C NPSAC GG G+ TSS+ XXXXXXXXXXXXXXXXXXXXXXXXXXXX ++ Y++TRYC +GHRGA+C+VCADGYRR SGGQ CVSC G W SG RA V+GV + V V+AL VFLIGGL AVS+
Sbjct: 489 GAVCVIDSREDDGLGLRLXXXXXXXXXXXXXXXXXXYVVNGDVAVVRDATAAAGGDELPGA---SWVGNTAGYDGGVIAVDGGGVWLEGGLASSNSASERGGVLFGIGESNVSWSGGGESWNNSAASGGTIYVSSSVANLTDLRLAGDHTPSGANLFFAGADARAVNVTAVAPEEL--EATFALHVDSGSAFRAFACVFEGWDGDSPSVLSEGEMVLDVCDFSGSGTPTLVRASR-----------AVTIRNAVLGDQNFGHAGFNASSLLGVGAHGCSSLPEELSCSVAEECVDAENGMGVLCPSFTEDATGGLVSLADVEDENDGVGFSTVELVSSXXXXXXXXXXXXXXXXXXXXXTAEVYYPDLVTHELVLRY--SXXXXXXXXXXXGSQVGVLWRLQRTDGDGGAQA---------------ADDETGAFEGAAPDYFTWTAVPWSGYLVRGQEVTIQLVGTPPPPPDPSAVFAVYNGEVAAEFRVVTRTAAADSAAASVAAGVERTFYYCAAGSYWDGETCVTCAQAMATMADGEGSLDCSAPGITLDTLPLAEGYWRGDITQTYIRKCWNPSACAGGTGVITSSSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATASSFEYEDTRYCIKGHRGAYCAVCADGYRRFSGGQLCVSCGGVWSSGARATFWVLGVVSLVVVMALAVFLIGGLTAVSR 1159
BLAST of mRNA_L-elsbetiae_contig10195.242.1 vs. uniprot
Match: D8LTT7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTT7_ECTSI) HSP 1 Score: 624 bits (1609), Expect = 2.030e-199 Identity = 402/705 (57.02%), Postives = 453/705 (64.26%), Query Frame = 1
Query: 16 AVYLLDSRTATGGGLEIAGGLEFTGNVAGRSGGGIYIENGDLTISRDA----GEEQEEGAVGGSWVGNTAGYDXXXXXXXXXXVRVEGGSASSNRAAQRGGVLFGTGESTVVWEAGGESRNNSAAAGGSLYLSSSAVNLTDLSLVGDHTPSGPNVFLASADVRAVNVSMVAPPAVLEEATFALHIDWGSKLRAFGCGFDGWGGDAPSVVSEGSVVLDACDFSGSAAQTLVHASSXXXXXXXXXXXAMAIRNAVLGDRNFERAGFNASSLLGVGVHNCASLPGELGCAVPEECVDAENGMGVLCPSFVVAATGGLFALTNSDASXXXXXXXXXPAVE----LSVVAPESSQTSEARDDSLSVFYHPDVVAKELVLRSPASAAQREEEESGMGGVGGVLWELRRTDGXXXXXXXXXXXXXXXXADVGEAADENGVFAGMSADNFTWTAVPWSGFLVRGQEVTIKLVGTPPPPRDLSTPFAVYNGEISAEFRVVSCTAEAGSSVASGAAAVESMFYYCGEGYYWDGGGCVTCVEEMATMVGHGE-ALDCSVPGITLDTLPLAKGYWRGDITRTLVRECLNPSACIGGRGMGTSSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------AALVYDETRYCAEGHRGAFCSVCADGYRRLSGGQPCVSCDGGWGSGVRAALLVVGVAAPVAVVALVVFLIGGLAAVSQ 2085
AVY++DSR G GL + NGD+T+ RDA G E+ GA SWVGNTAGYDXXXX V +EGG ASSN A++RGGVLFG GES V W GGES NNSAA+GG++Y+SSS NLTDL L GDHTPSG N+F A AD RAVNV+ VAP + EATFALH+D GS RAF C F+GW GD+PSVVSEG +VLDACDFSGS TLV AS + IRNAVLGD+NF AGFNASSLLGVG H C+SLP EL C+VPEECVDAENGMGVLCPSF AATGGLF L + + V PD+V ELVLR G GVLW L+RTDG A DE G F G + DNF WTAVPWSG+LVRGQEVTI+LVGTPPPP D S PFAVYNGE++A+FRVV+ TA A S S A VE FYYC G YW G CV C E MA GE +L+CSVPG+TLDTLPLA+GYWRGDIT+T +REC NPSAC GG G+ SS XXXXXXXXXXXXXXXXXXXXXXXXXX A+ Y++ RYC EGHRGA+C+VCADGYRR SGGQ CVSC G W +G RA L V+G+ +PV VVALVVFLIGGL AVSQ
Sbjct: 488 AVYVVDSREDNGLGLRMXXXXXXXXXXXXXXXXXXXXXNGDVTVVRDATAAVGGEELPGA---SWVGNTAGYDXXXXAVDGGGVWLEGGLASSNSASERGGVLFGIGESNVSWSGGGESWNNSAASGGTIYVSSSVANLTDLRLAGDHTPSGANLFFAGADARAVNVTAVAPEEL--EATFALHVDSGSAFRAFACVFEGWSGDSPSVVSEGDMVLDACDFSGSGTPTLVRASR-----------TVTIRNAVLGDQNFGHAGFNASSLLGVGAHGCSSLPEELSCSVPEECVDAENGMGVLCPSFTEAATGGLFTLADVEDEDDGVGFSTVELVSSXXXXXXXXXXXXXXXXXXXXXXXXXXXPDLVTHELVLRXXXXXXXXXXXXX-XGSQLGVLWRLQRTDGDGGAQA---------------ADDETGAFEGAAPDNFAWTAVPWSGYLVRGQEVTIQLVGTPPPPPDPSAPFAVYNGEVAAKFRVVTRTAAADSVATSVATEVERTFYYCAAGSYWHGEACVACAEVMA----DGEDSLECSVPGVTLDTLPLAEGYWRGDITQTYIRECWNPSACAGGTGVNASSXXXXXXXXXXXXXXXXXXXXXXXXXXXTTADVNATAASFEYEDARYCIEGHRGAYCAVCADGYRRFSGGQLCVSCAGVWSTGARATLWVLGMLSPVVVVALVVFLIGGLTAVSQ 1156
BLAST of mRNA_L-elsbetiae_contig10195.242.1 vs. uniprot
Match: A0A6H5JU65_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU65_9PHAE) HSP 1 Score: 87.4 bits (215), Expect = 6.550e-14 Identity = 63/210 (30.00%), Postives = 87/210 (41.43%), Query Frame = 1
Query: 1303 SADNFTWTAVPWSGFLVRGQEVTIKLVGTPPPPRDLSTPFAVYNGEISAEFRVVSCTAEAGSSVASGAAAVESMFYYCGEGYYWDGGGCVTCVEEMATMVGHGEALDCSVPGITLDTLPLAKGYWRGDITRTLVRECLNPSACIGGRGMGTSSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAALVYDETRYCAEGHRGAFCSVCADGY 1932
S + TW+ VP G L G T + G+ L++ F NG A F+ AE+ S + A V + FYYC EG Y++ C+ C + GE LDC PG+ TLP+A GYWR T +R+CL AC GG ++ YCA G++G +C+VC GY
Sbjct: 1289 STEALTWSIVPNVGILEEGGSATAVITGS------LTSDF---NGPTHALFK-----AESRQSGNTALAMVNTTFYYCLEGEYFNDEECLLCSDLEL----DGEGLDCDEPGVLQSTLPVASGYWRSSADTTTIRQCLYEEACKGG--------------------------------------TVISQSDDYCAVGYQGPYCAVCLSGY 1442
BLAST of mRNA_L-elsbetiae_contig10195.242.1 vs. uniprot
Match: A0A835YMX7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMX7_9STRA) HSP 1 Score: 75.5 bits (184), Expect = 2.870e-10 Identity = 49/148 (33.11%), Postives = 61/148 (41.22%), Query Frame = 1
Query: 1534 CGEGYYWDGGGCVTCVEEMATMVGHGEALDCSVPGITLDTLPLAKGYWRGDIT--RTLVRECLNPSACIGGRGMGTSSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAALVYDETRYCAEGHRGAFCSVCADGYRRLSGGQ--PCVS 1965
C +G Y CVTC E+ LDC VPG+T+ TLPL KG+WRG++T + + C N ACIGG D YCA+GH G +C+VC GY G Q PC S
Sbjct: 807 CQKGNYMGADQCVTCDTEV---------LDCQVPGVTIKTLPLRKGWWRGNLTLAQADILPCWNADACIGGAPS---------------------------------------DSNGYCADGHEGPYCAVCKKGYTSFIGRQCYPCTS 906
BLAST of mRNA_L-elsbetiae_contig10195.242.1 vs. uniprot
Match: D7FRH1_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH1_ECTSI) HSP 1 Score: 58.2 bits (139), Expect = 6.010e-5 Identity = 71/251 (28.29%), Postives = 114/251 (45.42%), Query Frame = 1
Query: 184 VGGSWVGNTAG-YDXXXXXXXXXXVRVEGGSASSNRAAQRGGVLFGTGESTVVWEAGGESRNNSAAAGGSLYLSSSAVNLT-DLSLVGDHTPSGPNVFLAS-ADVRAVNVSMVAPPAVLEEATF-ALHIDWGSKLRAFGCGFDGWGGDAP---SVVSEGSVVLDACDFSGSAAQTLVHASSXXXXXXXXXXXAMAIRNAVLGDRNFERAGF-NASSLLGVGVHNCASLPGELGCAVPEECVDAENGMGVLC 912
GG +V NTA Y + EG + + A +GG ++G + V + + N+A G ++YL+ + + D V D+ SG +VF A+ + A ++ + + E+++ A+ ++ + L A GC F GW GD + + GS+ LD+CDFS SAA +V + IRNA++ E A N S +L +C G G ECVD+ +GVLC
Sbjct: 142 TGGYFVNNTAKFYGGFIFLEEEASLSCEGATIRDHSAGDQGGGIYGRDAAWV--NSSCDLIGNAAPQGAAVYLTHTVMAANFDNHEVTDNVASGGSVFYATDTALFATGLNFQSGVGLQEDSSNRAIQLEGETTLVAEGCVFGGWMGDTVIRNANTAPGSLTLDSCDFSESAAVMVVTSPQSDTI----------IRNAIVDHLTIENAALVNDSLVLVDNAFDC----GTPGICAAGECVDSV--LGVLC 374 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10195.242.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig10195.242.1 >prot_L-elsbetiae_contig10195.242.1 ID=prot_L-elsbetiae_contig10195.242.1|Name=mRNA_L-elsbetiae_contig10195.242.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=695bp NRWGGAVYLLDSRTATGGGLEIAGGLEFTGNVAGRSGGGIYIENGDLTISback to top mRNA from alignment at L-elsbetiae_contig10195:2517..6213+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig10195.242.1 ID=mRNA_L-elsbetiae_contig10195.242.1|Name=mRNA_L-elsbetiae_contig10195.242.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3697bp|location=Sequence derived from alignment at L-elsbetiae_contig10195:2517..6213+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig10195:2517..6213+ >mRNA_L-elsbetiae_contig10195.242.1 ID=mRNA_L-elsbetiae_contig10195.242.1|Name=mRNA_L-elsbetiae_contig10195.242.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=4170bp|location=Sequence derived from alignment at L-elsbetiae_contig10195:2517..6213+ (Laminarionema elsbetiae ELsaHSoW15)back to top |