mRNA_L-elsbetiae_contig10167.218.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10167.218.1
Unique NamemRNA_L-elsbetiae_contig10167.218.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10167.218.1 vs. uniprot
Match: D8LGM1_ECTSI (F-box domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGM1_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 1.800e-23
Identity = 49/54 (90.74%), Postives = 51/54 (94.44%), Query Frame = 1 
Query:    1 AFNVSEDVTVTILGNLDARDLARAAATSRGWRRCTGSRILWAAVYARDFLGHVP 162
            AFNVSEDVT  ILG+LDARDLARAAATSRGWRRCT SR+LWAAVYARDFLGHVP
Sbjct:   88 AFNVSEDVTAAILGDLDARDLARAAATSRGWRRCTSSRVLWAAVYARDFLGHVP 141
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BLAST of mRNA_L-elsbetiae_contig10167.218.1 vs. uniprot
Match: A0A6H5L5A3_9PHAE (F-box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5A3_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 8.930e-23
Identity = 48/54 (88.89%), Postives = 50/54 (92.59%), Query Frame = 1 
Query:    1 AFNVSEDVTVTILGNLDARDLARAAATSRGWRRCTGSRILWAAVYARDFLGHVP 162
            AFNVSEDVT  ILG+LDA DLARAAATSRGWRRCT SR+LWAAVYARDFLGHVP
Sbjct:  678 AFNVSEDVTAAILGDLDAHDLARAAATSRGWRRCTSSRVLWAAVYARDFLGHVP 731
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10167.218.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGM1_ECTSI1.800e-2390.74F-box domain-containing protein (Fragment) n=1 Tax... [more]
A0A6H5L5A3_9PHAE8.930e-2388.89F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10167contigL-elsbetiae_contig10167:103..534 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionF-box domain
Ec32 orthologEc-10_002720.1
Exons1
Model size434
Cds size432
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815247.7881756-CDS-L-elsbetiae_contig10167:102..5341622815247.7881756-CDS-L-elsbetiae_contig10167:102..534Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10167 103..534 +
1691682794.4241316-CDS-L-elsbetiae_contig10167:102..5341691682794.4241316-CDS-L-elsbetiae_contig10167:102..534Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10167 103..534 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10167.218.1prot_L-elsbetiae_contig10167.218.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10167 103..534 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10167.218.1

>prot_L-elsbetiae_contig10167.218.1 ID=prot_L-elsbetiae_contig10167.218.1|Name=mRNA_L-elsbetiae_contig10167.218.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=144bp
AFNVSEDVTVTILGNLDARDLARAAATSRGWRRCTGSRILWAAVYARDFL
GHVPPLEDRRVAEGAAGATNGGGGGGNGGDRQHPLLPTAAPIPGYHTGGG
GGGGGVGGPQSFLRAVWAPSSSSSASGAAMTATAALARGPYGGG
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mRNA from alignment at L-elsbetiae_contig10167:103..534+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10167.218.1 ID=mRNA_L-elsbetiae_contig10167.218.1|Name=mRNA_L-elsbetiae_contig10167.218.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=432bp|location=Sequence derived from alignment at L-elsbetiae_contig10167:103..534+ (Laminarionema elsbetiae ELsaHSoW15)
GCTTTCAACGTCAGCGAGGACGTGACGGTGACGATCCTCGGCAACCTGGA
CGCGCGCGACCTGGCGCGCGCGGCGGCGACCAGCCGGGGCTGGCGCCGGT
GCACGGGCTCCCGGATCCTGTGGGCCGCCGTCTACGCGCGGGACTTCCTC
GGGCACGTGCCCCCGCTGGAGGACCGGCGAGTCGCGGAAGGTGCCGCGGG
GGCGACGAACGGCGGCGGCGGCGGCGGTAACGGGGGTGATCGCCAACACC
CGCTGCTGCCGACGGCAGCGCCTATCCCTGGCTATCATACCGGCGGCGGC
GGCGGCGGCGGCGGCGTGGGAGGCCCGCAGAGTTTTCTGCGCGCGGTATG
GGCGCCTTCTTCTTCTTCTTCGGCGTCGGGGGCGGCGATGACGGCCACAG
CGGCGCTGGCGCGTGGGCCGTACGGAGGAGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10167:103..534+

>mRNA_L-elsbetiae_contig10167.218.1 ID=mRNA_L-elsbetiae_contig10167.218.1|Name=mRNA_L-elsbetiae_contig10167.218.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=864bp|location=Sequence derived from alignment at L-elsbetiae_contig10167:103..534+ (Laminarionema elsbetiae ELsaHSoW15)
GCTTTCAACGTCAGCGAGGACGTGACGGTGACGATCCTCGGCAACCTGGA
CGCGCGCGACCTGGCGCGCGCGGCGGCGACCAGCCGGGGCTGGCGCCGGT
GCACGGGCTCCCGGATCCTGTGGGCCGCCGTCTACGCGCGGGACTTCCTC
GGGCACGTGCCCCCGCTGGAGGACCGGCGAGTCGCGGAAGGTGCCGCGGG
GGCGACGAACGGCGGCGGCGGCGGCGGTAACGGGGGTGATCGCCAACACC
CGCTGCTGCCGACGGCAGCGCCTATCCCTGGCTATCATACCGGCGGCGGC
GGCGGCGGCGGCGGCGTGGGAGGCCCGCAGAGTTTTCTGCGCGCGGTATG
GGCGCCTTCTTCTTCTTCTTCGGCGTCGGGGGCGGCGATGACGGCCACAG
CGGCGCTGGCGCGTGGGCCGTACGGAGGAGGGGCTTTCAACGTCAGCGAG
GACGTGACGGTGACGATCCTCGGCAACCTGGACGCGCGCGACCTGGCGCG
CGCGGCGGCGACCAGCCGGGGCTGGCGCCGGTGCACGGGCTCCCGGATCC
TGTGGGCCGCCGTCTACGCGCGGGACTTCCTCGGGCACGTGCCCCCGCTG
GAGGACCGGCGAGTCGCGGAAGGTGCCGCGGGGGCGACGAACGGCGGCGG
CGGCGGCGGTAACGGGGGTGATCGCCAACACCCGCTGCTGCCGACGGCAG
CGCCTATCCCTGGCTATCATACCGGCGGCGGCGGCGGCGGCGGCGGCGTG
GGAGGCCCGCAGAGTTTTCTGCGCGCGGTATGGGCGCCTTCTTCTTCTTC
TTCGGCGTCGGGGGCGGCGATGACGGCCACAGCGGCGCTGGCGCGTGGGC
CGTACGGAGGAGGG
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