prot_L-elsbetiae_contig10167.218.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig10167.218.1
Unique Nameprot_L-elsbetiae_contig10167.218.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length144
Homology
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BLAST of mRNA_L-elsbetiae_contig10167.218.1 vs. uniprot
Match: D8LGM1_ECTSI (F-box domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGM1_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 1.800e-23
Identity = 49/54 (90.74%), Postives = 51/54 (94.44%), Query Frame = 0 
Query:    1 AFNVSEDVTVTILGNLDARDLARAAATSRGWRRCTGSRILWAAVYARDFLGHVP 54
            AFNVSEDVT  ILG+LDARDLARAAATSRGWRRCT SR+LWAAVYARDFLGHVP
Sbjct:   88 AFNVSEDVTAAILGDLDARDLARAAATSRGWRRCTSSRVLWAAVYARDFLGHVP 141
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BLAST of mRNA_L-elsbetiae_contig10167.218.1 vs. uniprot
Match: A0A6H5L5A3_9PHAE (F-box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5A3_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 8.930e-23
Identity = 48/54 (88.89%), Postives = 50/54 (92.59%), Query Frame = 0 
Query:    1 AFNVSEDVTVTILGNLDARDLARAAATSRGWRRCTGSRILWAAVYARDFLGHVP 54
            AFNVSEDVT  ILG+LDA DLARAAATSRGWRRCT SR+LWAAVYARDFLGHVP
Sbjct:  678 AFNVSEDVTAAILGDLDAHDLARAAATSRGWRRCTSSRVLWAAVYARDFLGHVP 731
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10167.218.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGM1_ECTSI1.800e-2390.74F-box domain-containing protein (Fragment) n=1 Tax... [more]
A0A6H5L5A3_9PHAE8.930e-2388.89F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.1280.50coord: 3..87
e-value: 5.2E-8
score: 34.7
IPR001810F-box domainPFAMPF12937F-box-likecoord: 7..45
e-value: 3.3E-7
score: 30.1
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 6..54

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10167contigL-elsbetiae_contig10167:103..534 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10167.218.1mRNA_L-elsbetiae_contig10167.218.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig10167 103..534 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig10167.218.1 ID=prot_L-elsbetiae_contig10167.218.1|Name=mRNA_L-elsbetiae_contig10167.218.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=144bp
AFNVSEDVTVTILGNLDARDLARAAATSRGWRRCTGSRILWAAVYARDFL
GHVPPLEDRRVAEGAAGATNGGGGGGNGGDRQHPLLPTAAPIPGYHTGGG
GGGGGVGGPQSFLRAVWAPSSSSSASGAAMTATAALARGPYGGG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001810F-box_dom
IPR036047F-box-like_dom_sf