mRNA_L-elsbetiae_contig10128.177.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10128.177.1
Unique NamemRNA_L-elsbetiae_contig10128.177.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10128.177.1 vs. uniprot
Match: A0A6H5LFU5_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LFU5_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 2.130e-15
Identity = 50/57 (87.72%), Postives = 51/57 (89.47%), Query Frame = 1 
Query:   67 EAFERRHTEHLARMKAKIEAARRARELASPRPHTKKRAASFAGGRSTPRSSQEGWSG 237
            EAF  RHTEHLARMKAKIEAARRARELASPRPHTKKR +SFAGGRSTPRSS  G SG
Sbjct: 2274 EAFAHRHTEHLARMKAKIEAARRARELASPRPHTKKRTSSFAGGRSTPRSSSHGASG 2330
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BLAST of mRNA_L-elsbetiae_contig10128.177.1 vs. uniprot
Match: D8LHA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHA8_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 4.850e-15
Identity = 50/59 (84.75%), Postives = 51/59 (86.44%), Query Frame = 1 
Query:   67 EAFERRHTEHLARMKAKIEAARRARELASPRPHTKKRAASFAGGRSTPRSSQEGWSGVG 243
            EAF  RHTEHLARMKAKIEAARRARELASPRPHTKKR +SFAGGRSTPRSS  G S  G
Sbjct: 1808 EAFAHRHTEHLARMKAKIEAARRARELASPRPHTKKRTSSFAGGRSTPRSSSHGGSSGG 1866
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10128.177.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LFU5_9PHAE2.130e-1587.72Reverse transcriptase domain-containing protein n=... [more]
D8LHA8_ECTSI4.850e-1584.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10128contigL-elsbetiae_contig10128:3013..5252 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1244
Cds size774
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10128.177.1prot_L-elsbetiae_contig10128.177.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10128 3694..4887 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815244.381639-UTR-L-elsbetiae_contig10128:3012..31021622815244.381639-UTR-L-elsbetiae_contig10128:3012..3102Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10128 3013..3102 +
1691682792.4367304-UTR-L-elsbetiae_contig10128:3012..31021691682792.4367304-UTR-L-elsbetiae_contig10128:3012..3102Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10128 3013..3102 +
1622815244.3913562-UTR-L-elsbetiae_contig10128:3678..36931622815244.3913562-UTR-L-elsbetiae_contig10128:3678..3693Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10128 3679..3693 +
1691682792.4511828-UTR-L-elsbetiae_contig10128:3678..36931691682792.4511828-UTR-L-elsbetiae_contig10128:3678..3693Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10128 3679..3693 +
1622815244.4267118-UTR-L-elsbetiae_contig10128:4887..52521622815244.4267118-UTR-L-elsbetiae_contig10128:4887..5252Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10128 4888..5252 +
1691682792.4800637-UTR-L-elsbetiae_contig10128:4887..52521691682792.4800637-UTR-L-elsbetiae_contig10128:4887..5252Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10128 4888..5252 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815244.40109-CDS-L-elsbetiae_contig10128:3693..39111622815244.40109-CDS-L-elsbetiae_contig10128:3693..3911Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10128 3694..3911 +
1691682792.4595113-CDS-L-elsbetiae_contig10128:3693..39111691682792.4595113-CDS-L-elsbetiae_contig10128:3693..3911Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10128 3694..3911 +
1622815244.4165847-CDS-L-elsbetiae_contig10128:4331..48871622815244.4165847-CDS-L-elsbetiae_contig10128:4331..4887Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10128 4332..4887 +
1691682792.4714012-CDS-L-elsbetiae_contig10128:4331..48871691682792.4714012-CDS-L-elsbetiae_contig10128:4331..4887Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10128 4332..4887 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10128.177.1

>prot_L-elsbetiae_contig10128.177.1 ID=prot_L-elsbetiae_contig10128.177.1|Name=mRNA_L-elsbetiae_contig10128.177.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=258bp
MKAKIEAARRARELASPRPHTKKRAASFAGGRSTPRSSQEGWSGVGATSR
GAAGRRAAAARTKARSSSESGGSTPGPRGRARKAAGSGGGGGGSSPRTPP
SRQQAFSPSPPPATAAVAPGTSSGGVEASAAPSPAAGMPPGSTAAAAAVV
VANPGGGVGGCAAVGGTVDRGRVSLPVLDAVAENSAVGEATEKTVEGEEV
REGGDGSGAGGAEPSPSVASGAVSSAAAVVAVSATAAPATPAPAAAIETA
PTPPPAV*
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mRNA from alignment at L-elsbetiae_contig10128:3013..5252+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10128.177.1 ID=mRNA_L-elsbetiae_contig10128.177.1|Name=mRNA_L-elsbetiae_contig10128.177.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2240bp|location=Sequence derived from alignment at L-elsbetiae_contig10128:3013..5252+ (Laminarionema elsbetiae ELsaHSoW15)
GGAGAAGGGGATGCCGCCGCGGGGGGAGACGCGGGCGGCGAGAGCAGTGA
CGAAGACACGGACGATGAGGCGTTCGAACGGCGGCACACGGTAAGCCGTT
GGCGTTGACTGCCGTGTCGGAGTTTCGGTCGCCTCTGAGGCTGGTGGTGT
TGCTGGCCTGTTGGTATGTACCGTGCCGCTGGTGTTGAGTGGGCGTTTGG
CGTTGGTGTAGGGCTTTCTTGGTGCAGGTGTCGCGTGTGACAGTGCTTGA
GACACATGGACTCGCATTTTCACACACCCTACATAACTACACGTGAAAAG
GCCAAGCTTGGAACTCCTGGAATGTGGTTCAGACATGCGTGAGTGAGTGT
TTACGCGCGCTCTATTTTTTTCTGTCAGGACACAAAAATTTGTTTTGTAC
CACTGCCTAAGAGCTGCCTCTTGACACTCCCTTTCACTCTGGCTGTCAGC
TTTAAAGGACTACATACCTATGCATGTGCTGCATGCATCACCGAGTCCCC
GAAGTAGTTTTTTTTTTTTCACGTACGGGAACCGGTGGGTTTTGGCCTCC
AACAAAGCGCAACCATGTGTACCCGCCGCTCTCACCGCTCGCTCTCACGT
TCTCCTCTCCTTCCCCTAACCGTCTCTCCGAACACCTCCTCCTCCTCCTG
CTCCCTCCCTCGCCAGGAACACCTGGCGCGGATGAAGGCGAAAATCGAAG
CGGCGAGACGCGCCCGCGAGCTCGCCAGCCCCCGACCGCACACAAAGAAG
CGCGCGGCTTCCTTTGCTGGGGGGAGATCGACGCCGCGCTCCTCGCAGGA
GGGGTGGTCAGGGGTGGGCGCAACGTCCAGAGGGGCAGCTGGGCGAAGAG
CGGCGGCGGCTAGGACCAAGGCCCGTTCCTCCTCGGAGTCGGGCGGCAGG
TCGGTACCGACTTGTCTTTGACCCAACCCTGTGTCCATACATTTTCTTAT
TATGTCTTCCCATTATTGGCTTATTCCCACTGGCCCCCTTCCTCCAGTAC
GACTGGTCAGACGACCCAACCGGGGTCACACAGGAGGGGGAGTGTGGAGC
CTGCCTGTGATGTTTTTATCGCGAGCAGGGTTCAGCACTCCCCACCCTCG
TCAACAATGAAGTCGAAGTACATAAAAGTACATATCATTTACTAACGACA
TGTAGCTATTGTTTGGCAATTTATGGGTCTCAGTGCTCGGTTGTTCCCGT
CTGCCGTTGTTATGCCGAAGGCAGATTTCCGTTGCTGGTGTTTCACGCTT
CTGTCTTGACTTCGTCCTACCCCCCTCTTTTATCCCCCGCTGTTTGCCTC
GTGTTGACGAATTCACCAGCACGCCGGGCCCACGCGGGAGAGCCAGAAAG
GCAGCGGGTAGCGGCGGCGGCGGCGGTGGTAGCAGTCCAAGAACTCCTCC
CTCGAGACAGCAAGCGTTCTCGCCTTCTCCACCTCCTGCAACCGCCGCTG
TCGCGCCGGGAACCTCCAGCGGCGGCGTAGAAGCTTCGGCAGCGCCATCG
CCGGCAGCGGGGATGCCTCCAGGATCGACGGCAGCGGCGGCGGCGGTAGT
AGTGGCAAATCCTGGTGGTGGTGTCGGTGGTTGTGCTGCTGTTGGTGGTA
CTGTAGATCGCGGTAGAGTGTCTCTTCCCGTCCTTGATGCAGTAGCTGAA
AACAGCGCGGTAGGCGAGGCGACGGAGAAGACTGTTGAAGGAGAAGAGGT
TAGAGAAGGAGGAGACGGCAGTGGTGCTGGCGGCGCTGAGCCTTCGCCAA
GCGTTGCTAGCGGCGCTGTTTCTAGCGCTGCTGCCGTGGTTGCCGTATCT
GCTACAGCTGCCCCAGCAACGCCTGCCCCGGCTGCGGCTATCGAGACTGC
GCCAACACCACCACCCGCAGTGTAGTTTTTCGCCCACGTTTACATTTGGT
TCTAAGTGTGCTGCTGCAAGCGGTAGGGCGTAAGTACAGAGTGAAAGTTG
CATGTCTTGCGGTTTTGTCTTATCTTCGACCAGAGTATCATGTTGGAAGT
GCATACATAAAAACAAAGATGACCGGTGGCGCGAGAGAGGGACGGGTATA
GATATTTATTCTCTTCGGGTTGTGATCGGTTAGATTTGGGTTGTTGCTCT
GTGCGATGCACTGCCAGCCGTTTTGTATATGCTATATAACGGGCGATGCA
GTTTTCGTTGCTTACTCCCGCACGATTGTGTGCGGGTCAAGATTTTGATG
GAGTGAAAAGCGGGGGGGGGGAGACTTTCGGAAACACAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10128:3013..5252+

>mRNA_L-elsbetiae_contig10128.177.1 ID=mRNA_L-elsbetiae_contig10128.177.1|Name=mRNA_L-elsbetiae_contig10128.177.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1548bp|location=Sequence derived from alignment at L-elsbetiae_contig10128:3013..5252+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGGCGAAAATCGAAGCGGCGAGACGCGCCCGCGAGCTCGCCAGCCC
CCGACCGCACACAAAGAAGCGCGCGGCTTCCTTTGCTGGGGGGAGATCGA
CGCCGCGCTCCTCGCAGGAGGGGTGGTCAGGGGTGGGCGCAACGTCCAGA
GGGGCAGCTGGGCGAAGAGCGGCGGCGGCTAGGACCAAGGCCCGTTCCTC
CTCGGAGTCGGGCGGCAGATGAAGGCGAAAATCGAAGCGGCGAGACGCGC
CCGCGAGCTCGCCAGCCCCCGACCGCACACAAAGAAGCGCGCGGCTTCCT
TTGCTGGGGGGAGATCGACGCCGCGCTCCTCGCAGGAGGGGTGGTCAGGG
GTGGGCGCAACGTCCAGAGGGGCAGCTGGGCGAAGAGCGGCGGCGGCTAG
GACCAAGGCCCGTTCCTCCTCGGAGTCGGGCGGCAGCACGCCGGGCCCAC
GCGGGAGAGCCAGAAAGGCAGCGGGTAGCGGCGGCGGCGGCGGTGGTAGC
AGTCCAAGAACTCCTCCCTCGAGACAGCAAGCGTTCTCGCCTTCTCCACC
TCCTGCAACCGCCGCTGTCGCGCCGGGAACCTCCAGCGGCGGCGTAGAAG
CTTCGGCAGCGCCATCGCCGGCAGCGGGGATGCCTCCAGGATCGACGGCA
GCGGCGGCGGCGGTAGTAGTGGCAAATCCTGGTGGTGGTGTCGGTGGTTG
TGCTGCTGTTGGTGGTACTGTAGATCGCGGTAGAGTGTCTCTTCCCGTCC
TTGATGCAGTAGCTGAAAACAGCGCGGTAGGCGAGGCGACGGAGAAGACT
GTTGAAGGAGAAGAGGTTAGAGAAGGAGGAGACGGCAGTGGTGCTGGCGG
CGCTGAGCCTTCGCCAAGCGTTGCTAGCGGCGCTGTTTCTAGCGCTGCTG
CCGTGGTTGCCGTATCTGCTACAGCTGCCCCAGCAACGCCTGCCCCGGCT
GCGGCTATCGAGACTGCGCCAACACCACCACCCGCAGTGTAGCACGCCGG
GCCCACGCGGGAGAGCCAGAAAGGCAGCGGGTAGCGGCGGCGGCGGCGGT
GGTAGCAGTCCAAGAACTCCTCCCTCGAGACAGCAAGCGTTCTCGCCTTC
TCCACCTCCTGCAACCGCCGCTGTCGCGCCGGGAACCTCCAGCGGCGGCG
TAGAAGCTTCGGCAGCGCCATCGCCGGCAGCGGGGATGCCTCCAGGATCG
ACGGCAGCGGCGGCGGCGGTAGTAGTGGCAAATCCTGGTGGTGGTGTCGG
TGGTTGTGCTGCTGTTGGTGGTACTGTAGATCGCGGTAGAGTGTCTCTTC
CCGTCCTTGATGCAGTAGCTGAAAACAGCGCGGTAGGCGAGGCGACGGAG
AAGACTGTTGAAGGAGAAGAGGTTAGAGAAGGAGGAGACGGCAGTGGTGC
TGGCGGCGCTGAGCCTTCGCCAAGCGTTGCTAGCGGCGCTGTTTCTAGCG
CTGCTGCCGTGGTTGCCGTATCTGCTACAGCTGCCCCAGCAACGCCTGCC
CCGGCTGCGGCTATCGAGACTGCGCCAACACCACCACCCGCAGTGTAG
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