mRNA_L-elsbetiae_contig10126.176.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10126.176.1
Unique NamemRNA_L-elsbetiae_contig10126.176.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10126.176.1 vs. uniprot
Match: D7FMM3_ECTSI (Ankyrin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMM3_ECTSI)

HSP 1 Score: 213 bits (543), Expect = 2.320e-56
Identity = 260/476 (54.62%), Postives = 293/476 (61.55%), Query Frame = 3 
Query:  189 MERADEG-VPQRALLRGRGEEILVLVVKESTKLQLKEWLRLPLELSPADAAFLLERNQCCHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXENALIAGKTSLVQPLLAAGAGLARAVI---RRDS---------------GNGNDAGRGAXXXXXXXXXXXXXXXXXXXXXXXXXXCRVDHLAPASPTSSEARHAXXXXXXXXXXXXXXXXPSPDLR-------LAAAVSXXXXXXXXVSSPSCRSTRGTGCNGSTPGRSASSRSVXXXXXXXXXXXXXXXXGRRGRSRGAGGPASPREAELDSLSLHRATMARDSGRMRELLAAGVDRNATDLWSCTALHRAAEQVDGCAEHVRLXXXXXXXXXXXXXXXXXXXXXAAARGAETAVVDLIAAESCLAERGINGDTPLHSAVRFLSLATVRILLESDADEAAVNGDGETPSDVMGVLPDGRDIENQPDPLVVEAIKALLEAAPQERR 1538
            ME    G V  RA LRGRGE++LV+V+K S++ Q  EWLR P  LSP     L +R QCC + XXXXXXXXXXXXXXXXXXXXXXXXXX E+A+ AGK  LV+PLLAAGAGLA AV    RR+                G  + +G G XXXXXXXXXXXXXXXXXXXXXXXX      H    +P   +A                     P +R        ++  S         SSP C S          PG S+S    XXXXXXXXXX           S  +   A+      D L LHRATMARD+G MRELLAAGVDRNA DLW CTALHRAAEQ +  AEH   XXXXXXXXXXXXXXXXXXXXXAAARGAETAVVDL    SCL++RG NG     SAVRFLSL TVRILL+SDADEAA N DG+TP +V GV PDGR +ENQP P+V   I ALL+AA   R+
Sbjct:    1 MEGGKNGSVFDRASLRGRGEDLLVIVLKRSSRAQSTEWLRFPRVLSPDAKCLLQKREQCCEIRXXXXXXXXXXXXXXXXXXXXXXXXXXLEHAVEAGKGWLVEPLLAAGAGLAGAVGGGGRREXXXKGAGTAAVAVPGPGKPSCSGGGXXXXXXXXXXXXXXXXXXXXXXXXXASSSCGHTPHRTPVKQQAGLDFAWACSAPSTPPSCSTGPPSIRPDGGEPSASSGCSRNFGSQAPPSSPRCGS----------PGASSSXXXXXXXXXXXXXXDHA--------SSHSPTAAAIASVTSDPLCLHRATMARDAGLMRELLAAGVDRNAVDLWDCTALHRAAEQ-ERSAEHXXXXXXXXXXXXXXXXXXXXXXXXAAARGAETAVVDLXXXXSCLSDRGNNGXXXXXSAVRFLSLPTVRILLDSDADEAAKNNDGQTPREVTGVHPDGRPLENQPGPVVPRKIVALLDAAVLRRK 457
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10126.176.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FMM3_ECTSI2.320e-5654.62Ankyrin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMM3... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10126contigL-elsbetiae_contig10126:3076..6083 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score221.1
Seed ortholog evalue1.1e-54
Seed eggNOG ortholog2880.D7FMM3
Preferred nameANKRD66
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0044464
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG0504@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size2480
Cds size1386
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10126.176.1prot_L-elsbetiae_contig10126.176.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10126 3264..5177 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815244.2873068-UTR-L-elsbetiae_contig10126:3075..32631622815244.2873068-UTR-L-elsbetiae_contig10126:3075..3263Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10126 3076..3263 +
1691682792.3792403-UTR-L-elsbetiae_contig10126:3075..32631691682792.3792403-UTR-L-elsbetiae_contig10126:3075..3263Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10126 3076..3263 +
1622815244.3466444-UTR-L-elsbetiae_contig10126:5177..60831622815244.3466444-UTR-L-elsbetiae_contig10126:5177..6083Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10126 5178..6083 +
1691682792.4224322-UTR-L-elsbetiae_contig10126:5177..60831691682792.4224322-UTR-L-elsbetiae_contig10126:5177..6083Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10126 5178..6083 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815244.3059108-CDS-L-elsbetiae_contig10126:3263..38731622815244.3059108-CDS-L-elsbetiae_contig10126:3263..3873Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10126 3264..3873 +
1691682792.3915389-CDS-L-elsbetiae_contig10126:3263..38731691682792.3915389-CDS-L-elsbetiae_contig10126:3263..3873Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10126 3264..3873 +
1622815244.3174593-CDS-L-elsbetiae_contig10126:3903..41591622815244.3174593-CDS-L-elsbetiae_contig10126:3903..4159Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10126 3904..4159 +
1691682792.399719-CDS-L-elsbetiae_contig10126:3903..41591691682792.399719-CDS-L-elsbetiae_contig10126:3903..4159Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10126 3904..4159 +
1622815244.3347838-CDS-L-elsbetiae_contig10126:4657..51771622815244.3347838-CDS-L-elsbetiae_contig10126:4657..5177Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10126 4658..5177 +
1691682792.4128518-CDS-L-elsbetiae_contig10126:4657..51771691682792.4128518-CDS-L-elsbetiae_contig10126:4657..5177Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10126 4658..5177 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10126.176.1

>prot_L-elsbetiae_contig10126.176.1 ID=prot_L-elsbetiae_contig10126.176.1|Name=mRNA_L-elsbetiae_contig10126.176.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=462bp
MERADEGVPQRALLRGRGEEILVLVVKESTKLQLKEWLRLPLELSPADAA
FLLERNQCCHLRGKGEELLEVVMDCASDEQWCKWLQIPLENALIAGKTSL
VQPLLAAGAGLARAVIRRDSGNGNDAGRGAAAAAAATSARDQETSACSAS
SSSSSSCRVDHLAPASPTSSEARHAAAAPVATSSSAASSCCPSPDLRLAA
AVSPAAAAAAAVSSPSCRSTRGTGCNGSTPGRSASSRSVSSPSPSASPST
GTESSGRRGRSRGAGGPASPREAELDSLSLHRATMARDSGRMRELLAAGV
DRNATDLWSCTALHRAAEQVDGCAEHVRLLLAAGLDVRAKDMEGYTPLHF
AAARGAETAVVDLIAAESCLAERGINGDTPLHSAVRFLSLATVRILLESD
ADEAAVNGDGETPSDVMGVLPDGRDIENQPDPLVVEAIKALLEAAPQERR
TRVQETDSTRM*
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mRNA from alignment at L-elsbetiae_contig10126:3076..6083+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10126.176.1 ID=mRNA_L-elsbetiae_contig10126.176.1|Name=mRNA_L-elsbetiae_contig10126.176.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3008bp|location=Sequence derived from alignment at L-elsbetiae_contig10126:3076..6083+ (Laminarionema elsbetiae ELsaHSoW15)
CCAGGTAGAGGTGACGTGACGTGAAGTCAGAGAAGAACAAGACCAACGCC
TGGAGTTCTCGCGATCGCGACCAAGAGCTAGAGCTTAGAACCAGAGCACC
CCACAACTAACTCCTACTCCTCGGGCAGAGCAGGGCAGGGCGAGGGGGGC
GCGGCCGTGCAGCCAGCTCGGCCGATCGATCATATTCGATGGAAAGGGCC
GACGAGGGCGTACCCCAGCGAGCCTTGCTCCGCGGCAGGGGGGAGGAAAT
CCTCGTCCTCGTCGTCAAGGAAAGCACCAAGCTCCAACTCAAGGAGTGGC
TGCGGCTTCCCTTGGAGCTGTCCCCGGCCGACGCCGCCTTCCTGTTGGAG
CGTAACCAGTGCTGTCACCTCCGCGGCAAGGGGGAAGAGCTGCTGGAGGT
GGTGATGGATTGCGCTTCCGACGAGCAGTGGTGTAAGTGGCTGCAGATCC
CCCTCGAGAACGCGTTAATCGCCGGCAAGACCTCGCTTGTCCAGCCCCTC
CTTGCTGCCGGAGCGGGGCTCGCCCGCGCCGTTATCCGCCGAGACAGCGG
TAACGGCAACGACGCCGGTAGAGGAGCCGCGGCCGCCGCCGCCGCCACCT
CCGCTCGTGATCAGGAGACATCGGCGTGTTCTGCGTCTTCGTCGTCCTCG
TCGTCGTGCCGCGTCGATCATCTTGCTCCCGCGTCACCGACCTCGAGCGA
GGCCCGCCACGCCGCCGCCGCTCCCGTCGCCACCTCCTCTTCAGCGGCTT
CGTCGTGCTGCCCTAGCCCTGACCTCCGTTTGGCGGCGGCGGTCTCGCCG
GCGGCGGCGGCGGTCTCGCCGGCGGCGGCGGCGGCGGCGGCGGCTGCGGC
GGTCTCATCTCCATCCTGCCGTTCTACTAGAGGGACGGGCTGTAACGGCA
GTACTCCTGGTCGCTCCGCGTCGTCAAGATCTGTTTCTTCTCCGTCGCCC
TCGGCCTCCCCCAGCACCGGCACCGAAAGCAGTGGGCGCCGCGGCCGCAG
CCGCGGCGCTGGAGGTCCTGCATCCCCCCGCGAAGCCGAGTTGGACAGCC
TCTCCCTGCATCGGGCGACCATGGCTCGTGACAGGTAAACATAAAGTTTA
TAGAACCCCCCGCACACCCCTTCCGCTCCGTTGGACAAGCAAGATAGAAG
AGAGACAGCAGTAGCTCTGGCCTGTACATGACCACACCGAATGGTTGACT
GGCTCTCCATTATTCTGATGCTGTCATGACTATGACGTGTAGCATGCGTA
TTGATTACATAAGTTAGATAGATGCCTCAGGTGTATGTTCTCGCCCTTCC
CCCTTCACCCATGAGTTACTTTGTTTTTTCTCGTTGTGGTTCTCGTGGCT
CTGTCTTCGTTCGGCGCGCGCTTTCTCCTTACATCGCACAGGTAGGTATA
TTTTGCACGCTTGCATCGTGGTCCGGAGTTTCTTTACCTTCGCCTCGCTT
TGCGCCGTCTACACAAATGTCAGTAGATGGTGCGTGCGTCCCTGAAGTTA
TGCTTGTCCATGTGCCCCCAAAATATGTTCTCACTCGCCCTTGGCGCCTT
GCTTGCTGCACCCGCACCCGCGACAACAACAGTGGCCGCATGCGCGAGCT
CCTCGCCGCCGGGGTCGACCGCAACGCCACCGACCTGTGGAGCTGCACCG
CCCTCCACCGCGCCGCCGAGCAGGTCGACGGCTGCGCGGAGCACGTCCGC
CTCCTCCTCGCCGCCGGCCTGGACGTCCGCGCGAAGGACATGGAAGGCTA
CACGCCGCTGCACTTCGCGGCGGCCCGCGGGGCGGAGACGGCCGTCGTCG
ACCTCATCGCGGCGGAGTCGTGCCTGGCCGAGCGCGGCATCAACGGCGAC
ACCCCGCTCCACAGCGCCGTCCGCTTCCTGTCCCTGGCCACCGTGCGCAT
TCTCCTGGAGTCCGACGCGGATGAGGCCGCTGTCAACGGCGACGGGGAAA
CTCCGTCGGACGTGATGGGCGTGCTGCCGGACGGCCGGGACATCGAGAAC
CAACCCGACCCGCTCGTGGTCGAGGCGATCAAGGCCCTGCTCGAGGCTGC
GCCCCAGGAGCGCAGGACCCGCGTTCAAGAAACGGACTCGACGCGAATGT
AGCCCGGCTGTTTGAATATTCCAATAGGTACAGCAGCAAAATTGTCATAC
TTCCCCAGTTCACACGCGCGAGGGGTGGTTCAAAAACTCTCCGCAAACAC
GACAAAAAAGAGCCGAGAACCTCGGAACACCTCTGTTTTTGGGTTGGACT
GTGAAAACATGCGGGCATTTTTGGAAAGTCCACACAAACTTTAAGTGAGG
CTCCGTGATGTTCAGCGGGGGTATGCGATTATTCTTCGAGCAAGGCCTAT
ACTGATCAATGGGTACCCCTTCCCGCAGCCTTAACAGTAGGGTTATGTAA
AACTCAAATGTTGATACGGCCAGCAATTTTGGTTCGGATTAGAGGGAAGG
TAAACTTGGGCAACTTCCCCCTCGGATATAAAACTCGAATGTTGCTAAAT
CTGGGATCTTAGGGACGAAATCAACCGAGTGCACACAAGCTGAGTTACAT
ATTTTTACATGTTTTGTGAACGAACGCTCCCATCAAGGGCTCCAACAAAC
CCTTGACTGAAGGTGCTGCTGCCTGGACCCCTTGTATATGTATGTACTGT
AGGTAATTATGTTGATCGCGCTCGAGAGAACGCAAAAAAGGCATTTCGAA
AAAAGCATCAACGCGAACAGCAAGTAAGTGCACGTGAAGGGCAGCAAAAC
CAAAAGAGGACATCGTCGTATTCATTCGTCTCACTCTAATAGAGACAGAT
CCCGGGATCGACGTAGAAATGGGTACGGTGACATCTCTATCTATTCCCCA
TTCATTCTCTTTCGGTGTTCAGCTCTTCTTTCAATCGACAGATAGGAGGA
GGAAGAAGGAGCATACGCGTGTGTACGCAAGCAAGCTGCCTGTTGAAATT
GAGGCTTTAAAAGCCACGCTATAGTCTACACTGAATGAAGAAGACAGGGA
ACCGAGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10126:3076..6083+

>mRNA_L-elsbetiae_contig10126.176.1 ID=mRNA_L-elsbetiae_contig10126.176.1|Name=mRNA_L-elsbetiae_contig10126.176.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2772bp|location=Sequence derived from alignment at L-elsbetiae_contig10126:3076..6083+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAAAGGGCCGACGAGGGCGTACCCCAGCGAGCCTTGCTCCGCGGCAG
GGGGGAGGAAATCCTCGTCCTCGTCGTCAAGGAAAGCACCAAGCTCCAAC
TCAAGGAGTGGCTGCGGCTTCCCTTGGAGCTGTCCCCGGCCGACGCCGCC
TTCCTGTTGGAGCGTAACCAGTGCTGTCACCTCCGCGGCAAGGGGGAAGA
GCTGCTGGAGGTGGTGATGGATTGCGCTTCCGACGAGCAGTGGTGTAAGT
GGCTGCAGATCCCCCTCGAGAACGCGTTAATCGCCGGCAAGACCTCGCTT
GTCCAGCCCCTCCTTGCTGCCGGAGCGGGGCTCGCCCGCGCCGTTATCCG
CCGAGACAGCGGTAACGGCAACGACGCCGGTAGAGGAGCCGCGGCCGCCG
CCGCCGCCACCTCCGCTCGTGATCAGGAGACATCGGCGTGTTCTGCGTCT
TCGTCGTCCTCGTCGTCGTGCCGCGTCGATCATCTTGCTCCCGCGTCACC
GACCTCGAGCGAGGCCCGCCACGCCGCCGCCGCTCCCGTCGCCACCTCCT
CTTCAGCGGCTTCGTCGTGCTGCCCTAGCCCTGACCTCCGTTTGGCGGCG
GCGGTCTCGCATGGAAAGGGCCGACGAGGGCGTACCCCAGCGAGCCTTGC
TCCGCGGCAGGGGGGAGGAAATCCTCGTCCTCGTCGTCAAGGAAAGCACC
AAGCTCCAACTCAAGGAGTGGCTGCGGCTTCCCTTGGAGCTGTCCCCGGC
CGACGCCGCCTTCCTGTTGGAGCGTAACCAGTGCTGTCACCTCCGCGGCA
AGGGGGAAGAGCTGCTGGAGGTGGTGATGGATTGCGCTTCCGACGAGCAG
TGGTGTAAGTGGCTGCAGATCCCCCTCGAGAACGCGTTAATCGCCGGCAA
GACCTCGCTTGTCCAGCCCCTCCTTGCTGCCGGAGCGGGGCTCGCCCGCG
CCGTTATCCGCCGAGACAGCGGTAACGGCAACGACGCCGGTAGAGGAGCC
GCGGCCGCCGCCGCCGCCACCTCCGCTCGTGATCAGGAGACATCGGCGTG
TTCTGCGTCTTCGTCGTCCTCGTCGTCGTGCCGCGTCGATCATCTTGCTC
CCGCGTCACCGACCTCGAGCGAGGCCCGCCACGCCGCCGCCGCTCCCGTC
GCCACCTCCTCTTCAGCGGCTTCGTCGTGCTGCCCTAGCCCTGACCTCCG
TTTGGCGGCGGCGGTCTCGCCGGCGGCGGCGGCGGCTGCGGCGGTCTCAT
CTCCATCCTGCCGTTCTACTAGAGGGACGGGCTGTAACGGCAGTACTCCT
GGTCGCTCCGCGTCGTCAAGATCTGTTTCTTCTCCGTCGCCCTCGGCCTC
CCCCAGCACCGGCACCGAAAGCAGTGGGCGCCGCGGCCGCAGCCGCGGCG
CTGGAGGTCCTGCATCCCCCCGCGAAGCCGAGTTGGACAGCCTCTCCCTG
CATCGGGCGACCATGGCTCGTGACAGCGGCGGCGGCGGCGGCTGCGGCGG
TCTCATCTCCATCCTGCCGTTCTACTAGAGGGACGGGCTGTAACGGCAGT
ACTCCTGGTCGCTCCGCGTCGTCAAGATCTGTTTCTTCTCCGTCGCCCTC
GGCCTCCCCCAGCACCGGCACCGAAAGCAGTGGGCGCCGCGGCCGCAGCC
GCGGCGCTGGAGGTCCTGCATCCCCCCGCGAAGCCGAGTTGGACAGCCTC
TCCCTGCATCGGGCGACCATGGCTCGTGACAGTGGCCGCATGCGCGAGCT
CCTCGCCGCCGGGGTCGACCGCAACGCCACCGACCTGTGGAGCTGCACCG
CCCTCCACCGCGCCGCCGAGCAGGTCGACGGCTGCGCGGAGCACGTCCGC
CTCCTCCTCGCCGCCGGCCTGGACGTCCGCGCGAAGGACATGGAAGGCTA
CACGCCGCTGCACTTCGCGGCGGCCCGCGGGGCGGAGACGGCCGTCGTCG
ACCTCATCGCGGCGGAGTCGTGCCTGGCCGAGCGCGGCATCAACGGCGAC
ACCCCGCTCCACAGCGCCGTCCGCTTCCTGTCCCTGGCCACCGTGCGCAT
TCTCCTGGAGTCCGACGCGGATGAGGCCGCTGTCAACGGCGACGGGGAAA
CTCCGTCGGACGTGATGGGCGTGCTGCCGGACGGCCGGGACATCGAGAAC
CAACCCGACCCGCTCGTGGTCGAGGCGATCAAGGCCCTGCTCGAGGCTGC
GCCCCAGGAGCGCAGGACCCGCGTTCAAGAAACGGACTCGACGCGAATGT
AGTGGCCGCATGCGCGAGCTCCTCGCCGCCGGGGTCGACCGCAACGCCAC
CGACCTGTGGAGCTGCACCGCCCTCCACCGCGCCGCCGAGCAGGTCGACG
GCTGCGCGGAGCACGTCCGCCTCCTCCTCGCCGCCGGCCTGGACGTCCGC
GCGAAGGACATGGAAGGCTACACGCCGCTGCACTTCGCGGCGGCCCGCGG
GGCGGAGACGGCCGTCGTCGACCTCATCGCGGCGGAGTCGTGCCTGGCCG
AGCGCGGCATCAACGGCGACACCCCGCTCCACAGCGCCGTCCGCTTCCTG
TCCCTGGCCACCGTGCGCATTCTCCTGGAGTCCGACGCGGATGAGGCCGC
TGTCAACGGCGACGGGGAAACTCCGTCGGACGTGATGGGCGTGCTGCCGG
ACGGCCGGGACATCGAGAACCAACCCGACCCGCTCGTGGTCGAGGCGATC
AAGGCCCTGCTCGAGGCTGCGCCCCAGGAGCGCAGGACCCGCGTTCAAGA
AACGGACTCGACGCGAATGTAG
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