mRNA_L-elsbetiae_contig10108.161.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10108.161.1
Unique NamemRNA_L-elsbetiae_contig10108.161.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10108.161.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10108contigL-elsbetiae_contig10108:4783..5445 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size663
Cds size507
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10108.161.1prot_L-elsbetiae_contig10108.161.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10108 4911..5417 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815242.67044-UTR-L-elsbetiae_contig10108:4782..49101622815242.67044-UTR-L-elsbetiae_contig10108:4782..4910Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10108 4783..4910 +
1691682791.4044662-UTR-L-elsbetiae_contig10108:4782..49101691682791.4044662-UTR-L-elsbetiae_contig10108:4782..4910Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10108 4783..4910 +
1622815242.6966004-UTR-L-elsbetiae_contig10108:5417..54451622815242.6966004-UTR-L-elsbetiae_contig10108:5417..5445Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10108 5418..5445 +
1691682791.4370167-UTR-L-elsbetiae_contig10108:5417..54451691682791.4370167-UTR-L-elsbetiae_contig10108:5417..5445Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10108 5418..5445 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815242.6869762-CDS-L-elsbetiae_contig10108:4910..54171622815242.6869762-CDS-L-elsbetiae_contig10108:4910..5417Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10108 4911..5417 +
1691682791.4286716-CDS-L-elsbetiae_contig10108:4910..54171691682791.4286716-CDS-L-elsbetiae_contig10108:4910..5417Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10108 4911..5417 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10108.161.1

>prot_L-elsbetiae_contig10108.161.1 ID=prot_L-elsbetiae_contig10108.161.1|Name=mRNA_L-elsbetiae_contig10108.161.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=169bp
MKLAAVENDKTVPGRNYNLAPVSPSLLPVSADASTTPSYPSIDRRTCLCA
LFCSASRCQKFRVISRTCWGEVTSHERNSAPAGQEPPSTHVLRNSLKLDA
QENMGHKCRHRLAGASQPRTHVARIIAGACRMRVTVSNQILQRPFLPSRY
KRGHISKTSLAKKECRIT*
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mRNA from alignment at L-elsbetiae_contig10108:4783..5445+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10108.161.1 ID=mRNA_L-elsbetiae_contig10108.161.1|Name=mRNA_L-elsbetiae_contig10108.161.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=663bp|location=Sequence derived from alignment at L-elsbetiae_contig10108:4783..5445+ (Laminarionema elsbetiae ELsaHSoW15)
GCTGGTAAAATGAAACTCACCTAAAGGGTCGCAGAAGCGACACCCAGTAA
GTTGCCTCCTCCGAACATCACATATATCTCGTGGTAAGAGCGGGCAAACG
TGTTCTAGCTGTGCAGCCCCTCCCTACGATGAAACTCGCCGCTGTCGAGA
ACGACAAAACAGTTCCTGGTAGAAACTACAATCTTGCCCCCGTCTCACCA
TCCTTACTACCGGTGAGTGCCGATGCATCTACGACACCTTCCTATCCGTC
GATAGATCGCCGCACATGCTTGTGCGCCCTTTTCTGCTCAGCCTCTCGGT
GTCAAAAGTTCCGAGTTATCTCTCGCACATGTTGGGGTGAAGTTACGTCC
CACGAGAGAAACAGCGCACCGGCGGGCCAAGAACCCCCCTCCACACATGT
GTTAAGGAACTCGCTAAAGCTCGATGCCCAAGAAAACATGGGGCATAAAT
GCCGGCATCGCCTCGCTGGCGCCAGTCAACCTAGAACGCACGTTGCTAGA
ATTATTGCAGGGGCCTGCAGAATGAGAGTGACTGTGAGTAATCAGATCCT
GCAGCGCCCCTTTTTACCCAGCAGGTACAAAAGGGGCCACATTTCAAAAA
CTTCTTTGGCGAAGAAAGAGTGCCGAATCACATGACACACCCTCATTGCC
TAGCGCAGATGCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10108:4783..5445+

>mRNA_L-elsbetiae_contig10108.161.1 ID=mRNA_L-elsbetiae_contig10108.161.1|Name=mRNA_L-elsbetiae_contig10108.161.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1014bp|location=Sequence derived from alignment at L-elsbetiae_contig10108:4783..5445+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAACTCGCCGCTGTCGAGAACGACAAAACAGTTCCTGGTAGAAACTA
CAATCTTGCCCCCGTCTCACCATCCTTACTACCGGTGAGTGCCGATGCAT
CTACGACACCTTCCTATCCGTCGATAGATCGCCGCACATGCTTGTGCGCC
CTTTTCTGCTCAGCCTCTCGGTGTCAAAAGTTCCGAGTTATCTCTCGCAC
ATGTTGGGGTGAAGTTACGTCCCACGAGAGAAACAGCGCACCGGCGGGCC
AAGAACCCCCCTCCACACATGTGTTAAGGAACTCGCTAAAGCTCGATGCC
CAAGAAAACATGGGGCATAAATGCCGGCATCGCCTCGCTGGCGCCAGTCA
ACCTAGAACGCACGTTGCTAGAATTATTGCAGGGGCCTGCAGAATGAGAG
TGACTGTGAGTAATCAGATCCTGCAGCGCCCCTTTTTACCCAGCAGGTAC
AAAAGGGGCCACATTTCAAAAACTTCTTTGGCGAAGAAAGAGTGCCGAAT
CACATGAATGAAACTCGCCGCTGTCGAGAACGACAAAACAGTTCCTGGTA
GAAACTACAATCTTGCCCCCGTCTCACCATCCTTACTACCGGTGAGTGCC
GATGCATCTACGACACCTTCCTATCCGTCGATAGATCGCCGCACATGCTT
GTGCGCCCTTTTCTGCTCAGCCTCTCGGTGTCAAAAGTTCCGAGTTATCT
CTCGCACATGTTGGGGTGAAGTTACGTCCCACGAGAGAAACAGCGCACCG
GCGGGCCAAGAACCCCCCTCCACACATGTGTTAAGGAACTCGCTAAAGCT
CGATGCCCAAGAAAACATGGGGCATAAATGCCGGCATCGCCTCGCTGGCG
CCAGTCAACCTAGAACGCACGTTGCTAGAATTATTGCAGGGGCCTGCAGA
ATGAGAGTGACTGTGAGTAATCAGATCCTGCAGCGCCCCTTTTTACCCAG
CAGGTACAAAAGGGGCCACATTTCAAAAACTTCTTTGGCGAAGAAAGAGT
GCCGAATCACATGA
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