prot_L-digitata_M_contig10168.1.1 (polypeptide) Laminaria digitata LdigPH10_18mv male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-digitata_M_contig10168.1.1
Unique Nameprot_L-digitata_M_contig10168.1.1
Typepolypeptide
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Sequence length309
Homology
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BLAST of mRNA_L-digitata_M_contig10168.1.1 vs. uniprot
Match: A0A6H5JTW1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTW1_9PHAE)

HSP 1 Score: 301 bits (771), Expect = 1.380e-93
Identity = 154/297 (51.85%), Postives = 201/297 (67.68%), Query Frame = 0 
Query:    1 NGFFEGRLVRIDNDFGAFVGALDMSAYVDRHEVDTDAVGKRKPFEKVLVGFRHYVNTGRGESLEIAIT-----------------------------QVVPIYLLGAFDPKRYVKMYKDVKQQMGPARPGRFDGPGYRKLHPEIEDEEGLGSFQHYKQHRRNEICVRGRVGLPDRGWYRRKHGKPFKHFFKRGHQQGLHIKVVSMKLSPXXXXXXXXXXXXRRLRLRTNVGAFDGVVDMEAFLEVNPAAADSGLEAMEYYEEEGRDAGAKLPLTKIKMRRVDATCIDGDTAGDDLED 268
            +GF EGRLVRIDN+FGAFVG +DMSAY+D+H+++  AVGKR+PFEK L+GF+H+V TG  ESL+IAIT                             QVVPIYLLG F+ ++Y+ + ++ KQ+M P RPG+FD  GYRKLHPEIEDE GL  F+H+K +RRNEICVRGR G  +R WY+RK           G+++GLHIKV    L+P            R+LR++T VG FDG+VD++ FLE+ PAA +SG+E +EYY +EG+ AG KLPLTKI MRR  ATCI GD+A  ++E+
Sbjct:  378 SGFSEGRLVRIDNNFGAFVGVVDMSAYMDKHDINASAVGKRRPFEKPLIGFKHFVETGCDESLDIAITHVGGTVMVFMTVRLLLMRKCSLRPFVGAAQVVPIYLLGDFNHRKYISVNRNAKQEMEPPRPGKFDDEGYRKLHPEIEDE-GLEPFEHFKANRRNEICVRGRAGKVNRRWYKRKXXXXXXXXXXXGYRKGLHIKVKGHALTPLQHFCTLGFKDGRKLRMQTGVGVFDGMVDLDVFLELYPAAGESGMEPLEYYMKEGKAAGDKLPLTKIDMRRAGATCIGGDSAAANMEE 673
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BLAST of mRNA_L-digitata_M_contig10168.1.1 vs. uniprot
Match: D8LG00_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG00_ECTSI)

HSP 1 Score: 200 bits (508), Expect = 2.670e-60
Identity = 93/142 (65.49%), Postives = 117/142 (82.39%), Query Frame = 0 
Query:    1 NGFFEGRLVRIDNDFGAFVGALDMSAYVDRHEVDTDAVGKRKPFEKVLVGFRHYVNTGRGESLEIAITQVVPIYLLGAFDPKRYVKMYKDVKQQMGPARPGRFDGPGYRKLHPEIEDEEGLGSFQHYKQHRRNEICVRGRVG 142
            +GF EGRLVRIDN+FGAFVG +DMSAY+D+H+++  AVGKR+PFEK L GF+HYV TG  E L+IAIT VVPIYLLG F+ ++Y+ + ++ KQ+M P RPG+FD  GYRKLHPEIEDE GL  F+H+K +RR+EICVRGR G
Sbjct:   50 SGFSEGRLVRIDNNFGAFVGVVDMSAYMDKHDINASAVGKRRPFEKPLTGFKHYVETGCDEGLDIAITHVVPIYLLGDFNHRKYISVNRNAKQEMAPPRPGKFDDEGYRKLHPEIEDE-GLEPFEHFKANRRSEICVRGRAG 190
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10168.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JTW1_9PHAE1.380e-9351.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LG00_ECTSI2.670e-6065.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 260..308
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 256..308
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 266..305

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig10168contigL-digitata_M_contig10168:471..5890 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig10168.1.1mRNA_L-digitata_M_contig10168.1.1Laminaria digitata LdigPH10_18mv malemRNAL-digitata_M_contig10168 471..5890 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-digitata_M_contig10168.1.1 ID=prot_L-digitata_M_contig10168.1.1|Name=mRNA_L-digitata_M_contig10168.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=309bp
NGFFEGRLVRIDNDFGAFVGALDMSAYVDRHEVDTDAVGKRKPFEKVLVG
FRHYVNTGRGESLEIAITQVVPIYLLGAFDPKRYVKMYKDVKQQMGPARP
GRFDGPGYRKLHPEIEDEEGLGSFQHYKQHRRNEICVRGRVGLPDRGWYR
RKHGKPFKHFFKRGHQQGLHIKVVSMKLSPLKHFCTRGWKEGRRLRLRTN
VGAFDGVVDMEAFLEVNPAAADSGLEAMEYYEEEGRDAGAKLPLTKIKMR
RVDATCIDGDTAGDDLEDDDDEDDDDEDEEEEEDEDDDEGDDDDDGDDDD
DDDDDEDD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR016024ARM-type_fold