mRNA_L-digitata_M_contig10168.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig10168.1.1
Unique NamemRNA_L-digitata_M_contig10168.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig10168.1.1 vs. uniprot
Match: A0A6H5JTW1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTW1_9PHAE)

HSP 1 Score: 301 bits (771), Expect = 1.380e-93
Identity = 154/297 (51.85%), Postives = 201/297 (67.68%), Query Frame = 1 
Query:    1 NGFFEGRLVRIDNDFGAFVGALDMSAYVDRHEVDTDAVGKRKPFEKVLVGFRHYVNTGRGESLEIAIT-----------------------------QVVPIYLLGAFDPKRYVKMYKDVKQQMGPARPGRFDGPGYRKLHPEIEDEEGLGSFQHYKQHRRNEICVRGRVGLPDRGWYRRKHGKPFKHFFKRGHQQGLHIKVVSMKLSPXXXXXXXXXXXXRRLRLRTNVGAFDGVVDMEAFLEVNPAAADSGLEAMEYYEEEGRDAGAKLPLTKIKMRRVDATCIDGDTAGDDLED 804
            +GF EGRLVRIDN+FGAFVG +DMSAY+D+H+++  AVGKR+PFEK L+GF+H+V TG  ESL+IAIT                             QVVPIYLLG F+ ++Y+ + ++ KQ+M P RPG+FD  GYRKLHPEIEDE GL  F+H+K +RRNEICVRGR G  +R WY+RK           G+++GLHIKV    L+P            R+LR++T VG FDG+VD++ FLE+ PAA +SG+E +EYY +EG+ AG KLPLTKI MRR  ATCI GD+A  ++E+
Sbjct:  378 SGFSEGRLVRIDNNFGAFVGVVDMSAYMDKHDINASAVGKRRPFEKPLIGFKHFVETGCDESLDIAITHVGGTVMVFMTVRLLLMRKCSLRPFVGAAQVVPIYLLGDFNHRKYISVNRNAKQEMEPPRPGKFDDEGYRKLHPEIEDE-GLEPFEHFKANRRNEICVRGRAGKVNRRWYKRKXXXXXXXXXXXGYRKGLHIKVKGHALTPLQHFCTLGFKDGRKLRMQTGVGVFDGMVDLDVFLELYPAAGESGMEPLEYYMKEGKAAGDKLPLTKIDMRRAGATCIGGDSAAANMEE 673
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BLAST of mRNA_L-digitata_M_contig10168.1.1 vs. uniprot
Match: D8LG00_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG00_ECTSI)

HSP 1 Score: 200 bits (508), Expect = 2.670e-60
Identity = 93/142 (65.49%), Postives = 117/142 (82.39%), Query Frame = 1 
Query:    1 NGFFEGRLVRIDNDFGAFVGALDMSAYVDRHEVDTDAVGKRKPFEKVLVGFRHYVNTGRGESLEIAITQVVPIYLLGAFDPKRYVKMYKDVKQQMGPARPGRFDGPGYRKLHPEIEDEEGLGSFQHYKQHRRNEICVRGRVG 426
            +GF EGRLVRIDN+FGAFVG +DMSAY+D+H+++  AVGKR+PFEK L GF+HYV TG  E L+IAIT VVPIYLLG F+ ++Y+ + ++ KQ+M P RPG+FD  GYRKLHPEIEDE GL  F+H+K +RR+EICVRGR G
Sbjct:   50 SGFSEGRLVRIDNNFGAFVGVVDMSAYMDKHDINASAVGKRRPFEKPLTGFKHYVETGCDEGLDIAITHVVPIYLLGDFNHRKYISVNRNAKQEMAPPRPGKFDDEGYRKLHPEIEDE-GLEPFEHFKANRRSEICVRGRAG 190
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10168.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JTW1_9PHAE1.380e-9351.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LG00_ECTSI2.670e-6065.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig10168contigL-digitata_M_contig10168:471..5890 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size927
Hectar predicted targeting categoryother localisation
Exons4
Cds size927
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406621.7025895-CDS-L-digitata_M_contig10168:470..6771682406621.7025895-CDS-L-digitata_M_contig10168:470..677Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10168 471..677 +
1682406621.7128415-CDS-L-digitata_M_contig10168:2579..28121682406621.7128415-CDS-L-digitata_M_contig10168:2579..2812Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10168 2580..2812 +
1682406621.7206528-CDS-L-digitata_M_contig10168:3593..37981682406621.7206528-CDS-L-digitata_M_contig10168:3593..3798Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10168 3594..3798 +
1682406621.7367086-CDS-L-digitata_M_contig10168:5608..58901682406621.7367086-CDS-L-digitata_M_contig10168:5608..5890Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10168 5609..5890 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig10168.1.1prot_L-digitata_M_contig10168.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig10168 471..5890 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig10168.1.1

>prot_L-digitata_M_contig10168.1.1 ID=prot_L-digitata_M_contig10168.1.1|Name=mRNA_L-digitata_M_contig10168.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=309bp
NGFFEGRLVRIDNDFGAFVGALDMSAYVDRHEVDTDAVGKRKPFEKVLVG
FRHYVNTGRGESLEIAITQVVPIYLLGAFDPKRYVKMYKDVKQQMGPARP
GRFDGPGYRKLHPEIEDEEGLGSFQHYKQHRRNEICVRGRVGLPDRGWYR
RKHGKPFKHFFKRGHQQGLHIKVVSMKLSPLKHFCTRGWKEGRRLRLRTN
VGAFDGVVDMEAFLEVNPAAADSGLEAMEYYEEEGRDAGAKLPLTKIKMR
RVDATCIDGDTAGDDLEDDDDEDDDDEDEEEEEDEDDDEGDDDDDGDDDD
DDDDDEDD*
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mRNA from alignment at L-digitata_M_contig10168:471..5890+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig10168.1.1 ID=mRNA_L-digitata_M_contig10168.1.1|Name=mRNA_L-digitata_M_contig10168.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=5420bp|location=Sequence derived from alignment at L-digitata_M_contig10168:471..5890+ (Laminaria digitata LdigPH10_18mv male)
AACGGTTTCTTTGAGGGGAGACTGGTGCGCATCGACAACGACTTCGGAGC
ATTTGTCGGAGCTTTGGACATGTCCGCCTACGTGGACCGCCACGAGGTCG
ACACCGACGCGGTGGGGAAGAGGAAGCCGTTCGAGAAGGTCCTGGTGGGG
TTCAGGCACTACGTGAACACGGGGAGGGGCGAGAGTCTCGAGATCGCCAT
CACGCAGGTTGGGCGACTGGCGGCACGCTTTCACTACTGCAAAAAAAAAC
AACCTATTATACCACTCTGACAAGAAATAGAAGCAACTACAAGTGTATGA
TATACAATGAGTAAGTTGATTATATTTATTGTCAGACCGGTACACTAATT
CCAGGTAGTGTGTCCCCCCAAAAGGGTGCGGTTTTTAAAGGGGTTAACCT
CTTTTAGGACTGCACTCCCGTTTTTTTCATTCATTTCTTTGAGTTAAGAG
ACAAGATAAACCTTTCTGTACGTACAGTGCAGTAGTGAAAAGGGCTAAAA
GGGGAAAATAAAGACAGACTGAGCTGGAAAAAAAGTTCCGACGGCCTTTT
TTTTTTGTCGTACTGTACCAACAGAAATAAATGCATTGTCAAGCCAGGAA
CAACCAGCCACAGACAGACGGACACTACGACCCCCCATCGGAGGTAGATG
TGGGACGAAACTCAGTCAGCCGTGCTTACCGACGGCTGGGTTGAGGAACG
AGCTCTCTCGCTCTTCCACACCCGGGTTACTTACGGTGACAATCACCACC
ACCATCGTCCACCGCCCGTTCCTTTTTTTTGCCCTGTCCCCTTCCCCTCC
CCCAACCCCCCCCACCATCCGGACTCCGGACAACCATATATGTTCAGGAG
ATAGCACGTTCACCCTCTTGACAGGCAGCAAAATCTGCCTGATTTTTGCC
GTGACTGCTACCAAACAACAGTAGTGTTCCCTCTATTATAGTGCCGTTAT
GTGCCAGCCGAAAATACAGGCACTATAGCGGCAACCGGCACTATATACTC
CTCACACTGCCACACTTGGTTAATCCCATCTGTGCCAGGCGATTTCACCG
GCACTACTCGTATAGCGGGCAACCGGCACTATAGAGGGGCAACTACTGTA
CTATTACTAGGTTTTAATGTGAAAAAACCTCCTTGACCCCGAATGTTTTT
TTTTCCTTGCTTGACATGTCTCCACTCCTGACATCGCGGGTGTTTGCGAT
CAACCCACGTTGGCACCACTCTGGTTTGGGTTTCTTGTGGTCTGTTTCCT
ATATAAAATTGACCACCAACCCATGGAACCTACCCAAGAGCTCGCCCAAC
CGACGAATCATTAGAAAGCGGAATTTTGGGCACGTTTTGCTAATAACTCT
CGGCTAGGTTCCATGGGTTGGGGGTCATTTTTATTTAGGAAACAGACCAC
AAGAAACCCAACCAAAGTGGTTCCCACGTGGGTCAATCGCAAACACCCTA
TCTTTTCTTTCTAGGCGGCGGAACCGTCGTTCAGGGAGTGAAATCGTCGC
TTAAGCGGTGCAACTCACACAGCCTTGAGCAAGTTAGCAAGTCAGCAACG
GTCGCACGTTTCGACGACGGTTACATACGGTAATCGTCACCACCACCACC
ACCACCACCACCACCGCCCGTTCCTTTTTTTCCTGTCCCCTCTCACTCCC
CCCCCCCCCCCCCCCCCCCCCCCCCAAACCCCCACCACCACGCCACCCGC
CCCGGACGCCCCCCCACCCCCCCCCCAACCTCAAGTCCNNNNNNNNNNCG
TTCCTTTTTTTCCTCTCCCCCCTCCCCCCCCCCCCCCCCGCCCCCCCCCC
CGGCCCCCGAAAAAAAGGCGGTGCCCATCCCCCCCCCCCCCCCCCCCCCC
TCGCCATTGTAAGGATGCGGGGGTCAATGGTCATACAACTACGGCCATGC
ATGATGATAATGAATAGCGATGTTTTCCTGGTCGGTGAAAACCCGACGTG
CCCCGTCCCGGCATTGTATTATAGGGATGCGAGGGTCTATGGTCCTACGA
CTACGGCCATGGCATGACGATAATGAATACACCCCCGCCCCCCCCCCCAA
CCCCCCCCCCTCAACCCTCCCCCCCAAACCCCCTCCCCATCCGGACTCCG
GACATGCAGGTGGTGCCGATCTATCTCCTCGGCGCGTTCGACCCCAAGCG
GTACGTCAAGATGTACAAGGACGTGAAGCAGCAGATGGGACCCGCGCGCC
CGGGGCGCTTCGACGGGCCGGGTTACCGGAAGCTGCACCCGGAGATCGAG
GACGAGGAGGGACTGGGATCCTTCCAGCACTACAAGCAGCACAGGCGCAA
CGAGATATGCGTGCGCGGGAGGGTGGGCCTACCGGACAGGGGGTGCGTTG
CATTGCGTTGCGTTGCGTTGCGTTTTTGTCTTTTTTGAGCAAAAAATTGG
AAAAACGTCAGCTGTGAGTACAACCGATTGAGTGGTTGACCTAAAATCAA
CTTTGGAAGCTGCGTGATATGTCAAACACGCTCGTTGGGCGCGCTTTATT
TCTATGTTCCATTTAGAACATGGTGTTTTGAAAAACGTCAGCTGTGAGTA
CGAGTACGAACGATTCAGTGGTTGAAACTCAACTTTTGCAAAGCTGGGTG
GCACGTCAGGCACGCTCTTTGCTATTGGTGGGGGAGATTTTTTTTTTTTG
TGTTAATATTAATATTAATAGTTCGTTACCAGGTACTTGGCAAGTACTGT
ACCGCTCTGCCCGGAAATGTAAGCACCGTTTTTACATTGTTACTAGCATA
AAACGGTGCTTATATTTACGGACAGAGTGGTAGGTGGCAGCCGCGCGTCC
TTTCTGAAACAGCTGCCTCCTGCTGCTGATGCTGCCGCTGCCACTGCTGC
TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGGTGGTGGTGCTGGTGGTG
GTGCTAACACGACGCCCTATGTCGTCTCTTCACAAAAATGAATTAATTAA
TCCACACTACTGTAGCTGAAGTCAACCATTGGTACTAATTAATCGCATCT
ACCCCCCCCCAGTGTATACATCATAGCTCACTCACAAGGCAGTAATAATT
TGTGATTTTACTTGTGATATATACCGCTCTCTCAACTTCCCCGCAACCCC
TGCACTTTGTTTGTTTTTGCAAGGTGGTACAGGAGGAAGCACGGCAAGCC
TTTCAAGCACTTCTTCAAGAGGGGGCACCAACAAGGCCTGCACATCAAGG
TCGTCTCTATGAAGCTCTCGCCCCTGAAGCACTTCTGCACCCGGGGCTGG
AAGGAGGGTAGGCGGCTGCGGCTGCGCACGAACGTCGGAGCTTTCGACGG
AGTTGTCGACATGGAGGCTTTCCTCGAGGTGGGAAGGAAGGAAAAAAAAG
AAAGGAAACGAAACGCATTACTATGACGCCCAAAAACGCACGGAAAGCAG
AAATGTTTTTACGACGGTGCAACGGTGGGAGGAGAAGTGGGAAGTCGGAA
AACTCTTTCGAGAAGGCAGCTTCACCTTTTTTGTTGCGCTTTGATTTCAC
CCCTCTCCCCCCCCCCCAGCCCCAGCCCCCGCCCCCCACCCACCCACTCC
TCCCCCCTCCCCCCCCGCCACCCCCTTTGTCCAGCTGAAACAGGCACTCG
TGCTTACAGTGGATGAGGGAATAGCTCCCCCCCCCCCCCCCACCTCCCCC
TCCACCACCCCCCTTACCCCTGGCCTCCCCACCGGGCGCATACATGCACC
GGGATGACATCGCGCAAACAATCGCTTCTCTGGTGTGACCGTTCACCGCC
GTGCCATCGTCTTGTGTGTCTCGGCTGGTCTCGTCTGCCTGTGTGGGTCT
TTTACCGCCTTTTGGGGTCGGGTCGTGTCATTTAATTTTCTGCTTGTCCC
AGGTACCAAAGTTATGTGATATGGCTTAACCTGAGGTTGAGTAATTGTGG
TGAACTTTTTACCCGGTAGCATAGCTCACCTTCACATTACGTTCACACTT
CGCCGCGACGTCAGCAGGATTCCAACCTCTGCGCTTGAAATCACTAAGGG
TTTGTGCAGTACATAGGCTTCCCGCATCTCGTTTCTCTTTTTTTCGTTTC
CCTTCTCTTTCTCTGTAGTAGCTAAAGTGTCTACAGTACCAGTATGAGCG
ATCATCGTGTAAGGTTGTCTCGCACATCTTATCGATTTATGTCGGACTGA
ATCATGTACGATACATTGTCGGAGGGAAAAATAAATAATACCAGGATGGA
AAACTATATAGATGTTTGTTTTTACCCTTGGATGGGCTGGTCGGCTAACC
TTTCGCACAACATGGGACAGATCACGCTCTAGGTAATTACCCACTGTAGC
TGCTACGGACAAACAATGTGAAATCACGAATCGCAAGAAATATGATTGCC
TAAGATCCAGTCGTATACGTACTCCGAAGCTGTTTNNNNNNNNNNAAGTA
CTACCTCCCATTTTTAGGAGCATGGGACGTAGTACTTGACTTTAATGTGT
CTAAGTGCTCAAGAGAAGGTGTTTTTTATGTGCACAGATAGGCACATTTT
TTGGCTAAGTGCCAGTAGGGTTAAGTCTATACCAGGTATATATATGCCGT
TATGGATAATGTATGCCTGGTATATGCACAAGAGTTAGACCATACATACC
CCACCCGGGGAGCATGTGCTAACTCATGCAGATCATCTACGGTAGATGAG
GGACATATCTTCCCTGCAATATCGAGACAATGAAACGGATGTGATGTGAT
CTATCTGATGCGTGTAATTTTTTACCGGGTATCATGGCTCAGTAGTAGGC
ATAACACCGTATCACTGTATATCTCCTCCCCCCGCTGCTGCCGCTACCGC
CGCCCTCGCTACCACCACCATCACCACCACCACCACCACCAACACCCCCC
CCCCCCCCCCCACCCCCAACCACCCCCCCCCACCCCCCCCCCCCCCCCCC
CCCTCCCCTCTACCACCACCACCACCACCACCACCACCACCACCATCACC
ACCACCACCACCATCACCTCCACCACCACCTCTACCACTGCCACCACCAC
CACCACCACCACCACCACCACCACCACCATCTCCACCACCACCACCACCA
CCACCACCACCACCCCCGGCTCCCCCACCATCACCACCACCACCACCACC
ACCACCGCTACCGTTGTTGGCTGTCCGAGAGAACGCAGGTTAACCCCGCA
GCCGCGGACTCTGGCTTGGAGGCGATGGAGTACTACGAGGAGGAGGGGAG
GGACGCCGGGGCTAAGCTGCCTCTGACAAAAATCAAGATGCGCCGGGTGG
ATGCGACGTGCATTGATGGTGATACTGCCGGAGATGACCTAGAAGATGAT
GATGATGAGGATGATGATGATGAGGATGAGGAGGAAGAGGAAGACGAGGA
TGATGATGAGGGTGATGATGATGATGATGGCGATGATGATGATGATGATG
ATGATGATGAGGATGACTAA
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Coding sequence (CDS) from alignment at L-digitata_M_contig10168:471..5890+

>mRNA_L-digitata_M_contig10168.1.1 ID=mRNA_L-digitata_M_contig10168.1.1|Name=mRNA_L-digitata_M_contig10168.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=927bp|location=Sequence derived from alignment at L-digitata_M_contig10168:471..5890+ (Laminaria digitata LdigPH10_18mv male)
AACGGTTTCTTTGAGGGGAGACTGGTGCGCATCGACAACGACTTCGGAGC
ATTTGTCGGAGCTTTGGACATGTCCGCCTACGTGGACCGCCACGAGGTCG
ACACCGACGCGGTGGGGAAGAGGAAGCCGTTCGAGAAGGTCCTGGTGGGG
TTCAGGCACTACGTGAACACGGGGAGGGGCGAGAGTCTCGAGATCGCCAT
CACGCAGGTGGTGCCGATCTATCTCCTCGGCGCGTTCGACCCCAAGCGGT
ACGTCAAGATGTACAAGGACGTGAAGCAGCAGATGGGACCCGCGCGCCCG
GGGCGCTTCGACGGGCCGGGTTACCGGAAGCTGCACCCGGAGATCGAGGA
CGAGGAGGGACTGGGATCCTTCCAGCACTACAAGCAGCACAGGCGCAACG
AGATATGCGTGCGCGGGAGGGTGGGCCTACCGGACAGGGGGTGGTACAGG
AGGAAGCACGGCAAGCCTTTCAAGCACTTCTTCAAGAGGGGGCACCAACA
AGGCCTGCACATCAAGGTCGTCTCTATGAAGCTCTCGCCCCTGAAGCACT
TCTGCACCCGGGGCTGGAAGGAGGGTAGGCGGCTGCGGCTGCGCACGAAC
GTCGGAGCTTTCGACGGAGTTGTCGACATGGAGGCTTTCCTCGAGGTTAA
CCCCGCAGCCGCGGACTCTGGCTTGGAGGCGATGGAGTACTACGAGGAGG
AGGGGAGGGACGCCGGGGCTAAGCTGCCTCTGACAAAAATCAAGATGCGC
CGGGTGGATGCGACGTGCATTGATGGTGATACTGCCGGAGATGACCTAGA
AGATGATGATGATGAGGATGATGATGATGAGGATGAGGAGGAAGAGGAAG
ACGAGGATGATGATGAGGGTGATGATGATGATGATGGCGATGATGATGAT
GATGATGATGATGATGAGGATGACTAA
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