mRNA_L-digitata_M_contig99212.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig99212.1.1
Unique NamemRNA_L-digitata_M_contig99212.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig99212.1.1 vs. uniprot
Match: A0A852ZLY4_9ACTN (Putative ATPase/DNA-binding SARP family transcriptional activator n=2 Tax=Actinopolymorpha rutila TaxID=446787 RepID=A0A852ZLY4_9ACTN)

HSP 1 Score: 49.7 bits (117), Expect = 3.450e-5
Identity = 32/74 (43.24%), Postives = 42/74 (56.76%), Query Frame = 1 
Query:   10 GCAPDRARTEYSAPM--FLGRQAELNTLGALMDEGQSLTIYGGPGMGKATLARELTRRSHLRFVE----VNLAA 213
            G A ++ART    P+  F+GR AEL +LG L+ E + +T+ G  G GK  LA EL  R+  R  E    V LAA
Sbjct:  290 GSAREQARTNLRVPLTSFVGRDAELRSLGKLITEERLVTVVGSGGAGKTRLALELAARTTPRPAEETWFVELAA 363
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig99212.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A852ZLY4_9ACTN3.450e-543.24Putative ATPase/DNA-binding SARP family transcript... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig99212contigL-digitata_M_contig99212:464..676 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog926560.KE387023_gene1864
PFAMsAAA_35,ATPase_2,TniB
Model size213
Max annot lvl2|Bacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.74e-05
EggNOG OGsCOG1672@1|root,COG1672@2|Bacteria
Cds size213
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408650.2186296-CDS-L-digitata_M_contig99212:463..6761682408650.2186296-CDS-L-digitata_M_contig99212:463..676Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig99212 464..676 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig99212.1.1prot_L-digitata_M_contig99212.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig99212 464..676 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig99212.1.1

>prot_L-digitata_M_contig99212.1.1 ID=prot_L-digitata_M_contig99212.1.1|Name=mRNA_L-digitata_M_contig99212.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=71bp
LELGCAPDRARTEYSAPMFLGRQAELNTLGALMDEGQSLTIYGGPGMGKA
TLARELTRRSHLRFVEVNLAA
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mRNA from alignment at L-digitata_M_contig99212:464..676-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig99212.1.1 ID=mRNA_L-digitata_M_contig99212.1.1|Name=mRNA_L-digitata_M_contig99212.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=213bp|location=Sequence derived from alignment at L-digitata_M_contig99212:464..676- (Laminaria digitata LdigPH10_18mv male)
TTAGAGTTGGGATGTGCGCCGGACCGGGCGCGGACCGAGTATAGTGCGCC
GATGTTTCTCGGACGGCAGGCAGAGCTGAACACCCTCGGCGCTCTGATGG
ATGAGGGCCAGAGTCTCACAATTTATGGCGGCCCAGGCATGGGCAAAGCA
ACCCTGGCCCGCGAGCTCACTCGACGCTCCCATCTTCGTTTCGTGGAAGT
GAACCTCGCCGCC
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Coding sequence (CDS) from alignment at L-digitata_M_contig99212:464..676-

>mRNA_L-digitata_M_contig99212.1.1 ID=mRNA_L-digitata_M_contig99212.1.1|Name=mRNA_L-digitata_M_contig99212.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=213bp|location=Sequence derived from alignment at L-digitata_M_contig99212:464..676- (Laminaria digitata LdigPH10_18mv male)
TTAGAGTTGGGATGTGCGCCGGACCGGGCGCGGACCGAGTATAGTGCGCC
GATGTTTCTCGGACGGCAGGCAGAGCTGAACACCCTCGGCGCTCTGATGG
ATGAGGGCCAGAGTCTCACAATTTATGGCGGCCCAGGCATGGGCAAAGCA
ACCCTGGCCCGCGAGCTCACTCGACGCTCCCATCTTCGTTTCGTGGAAGT
GAACCTCGCCGCC
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