prot_L-digitata_M_contig99212.1.1 (polypeptide) Laminaria digitata LdigPH10_18mv male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-digitata_M_contig99212.1.1
Unique Nameprot_L-digitata_M_contig99212.1.1
Typepolypeptide
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Sequence length71
Homology
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BLAST of mRNA_L-digitata_M_contig99212.1.1 vs. uniprot
Match: A0A852ZLY4_9ACTN (Putative ATPase/DNA-binding SARP family transcriptional activator n=2 Tax=Actinopolymorpha rutila TaxID=446787 RepID=A0A852ZLY4_9ACTN)

HSP 1 Score: 49.7 bits (117), Expect = 3.450e-5
Identity = 32/74 (43.24%), Postives = 42/74 (56.76%), Query Frame = 0 
Query:    4 GCAPDRARTEYSAPM--FLGRQAELNTLGALMDEGQSLTIYGGPGMGKATLARELTRRSHLRFVE----VNLAA 71
            G A ++ART    P+  F+GR AEL +LG L+ E + +T+ G  G GK  LA EL  R+  R  E    V LAA
Sbjct:  290 GSAREQARTNLRVPLTSFVGRDAELRSLGKLITEERLVTVVGSGGAGKTRLALELAARTTPRPAEETWFVELAA 363
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig99212.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A852ZLY4_9ACTN3.450e-543.24Putative ATPase/DNA-binding SARP family transcript... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 9..71
e-value: 1.2E-6
score: 30.7
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 15..70

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig99212contigL-digitata_M_contig99212:464..676 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig99212.1.1mRNA_L-digitata_M_contig99212.1.1Laminaria digitata LdigPH10_18mv malemRNAL-digitata_M_contig99212 464..676 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-digitata_M_contig99212.1.1 ID=prot_L-digitata_M_contig99212.1.1|Name=mRNA_L-digitata_M_contig99212.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=71bp
LELGCAPDRARTEYSAPMFLGRQAELNTLGALMDEGQSLTIYGGPGMGKA
TLARELTRRSHLRFVEVNLAA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase