mRNA_L-digitata_M_contig99208.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male
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Overview
Homology
BLAST of mRNA_L-digitata_M_contig99208.1.1 vs. uniprot
Match: A0A2E8XTX8_9PROT (YHS domain protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2E8XTX8_9PROT) HSP 1 Score: 145 bits (367), Expect = 3.660e-43 Identity = 71/100 (71.00%), Postives = 78/100 (78.00%), Query Frame = 1
Query: 7 MRPFIQAATFLFAVFVLISPAHAVDPVFHVDGKAIRGYDPVAYFTQEKAVEGSPAHSIEYNGATWQFASAENRELFAANPEKYAPAYGGYCAFAVANNYT 306
MR I ATFLF FV PA AVDPVF+ GKAIRGYDPVAYFT+EKAV+G HS + GA WQF+SA N+ELFAANPEKYAP YGGYCA+AV NNYT
Sbjct: 1 MRIAISVATFLFIAFVSAGPALAVDPVFNTGGKAIRGYDPVAYFTEEKAVKGKSEHSFTFQGAIWQFSSAANQELFAANPEKYAPQYGGYCAWAVVNNYT 100
BLAST of mRNA_L-digitata_M_contig99208.1.1 vs. uniprot
Match: UPI001872992E (YHS domain-containing protein n=1 Tax=Pelagibius sp. NBU2595 TaxID=2762760 RepID=UPI001872992E) HSP 1 Score: 115 bits (289), Expect = 6.360e-31 Identity = 56/99 (56.57%), Postives = 68/99 (68.69%), Query Frame = 1
Query: 10 RPFIQAATFLFAVFVLISPAHAVDPVFHVDGKAIRGYDPVAYFTQEKAVEGSPAHSIEYNGATWQFASAENRELFAANPEKYAPAYGGYCAFAVANNYT 306
R F+ AA PA A+DP F+ DG AI+GYDPVAYFT+ K V G P + ++ GATWQFASA NR+ FAA PE+YAP YGGYCA+AV+ YT
Sbjct: 9 RHFLAAAVAAGLAAGAAGPAQALDPTFNTDGLAIQGYDPVAYFTEGKPVYGKPEFTYDFAGATWQFASAANRDTFAAEPERYAPQYGGYCAWAVSEGYT 107
BLAST of mRNA_L-digitata_M_contig99208.1.1 vs. uniprot
Match: A0A7G7ZDK5_9GAMM (YHS domain protein n=2 Tax=Halomonas sp. SH5A2 TaxID=2749040 RepID=A0A7G7ZDK5_9GAMM) HSP 1 Score: 114 bits (286), Expect = 1.670e-30 Identity = 54/78 (69.23%), Postives = 61/78 (78.21%), Query Frame = 1
Query: 61 SPAHAVDPVFHVDGKAIRGYDPVAYFTQEKAVEGSPAHSIEYNGATWQFASAENRELFAANPEKYAPAYGGYCAFAVA 294
SP +PVF DG AIRGYDPVAYFT +K V GS AH+ E+NG TW FA+AE+RE FAA PE YAPAYGGYCA+AVA
Sbjct: 22 SPVAEAEPVFAEDGIAIRGYDPVAYFTADKPVAGSSAHAFEWNGVTWHFANAEHRERFAAKPEMYAPAYGGYCAWAVA 99
BLAST of mRNA_L-digitata_M_contig99208.1.1 vs. uniprot
Match: UPI000B3627E2 (YHS domain-containing protein n=1 Tax=Thaumasiovibrio occultus TaxID=1891184 RepID=UPI000B3627E2) HSP 1 Score: 114 bits (285), Expect = 2.570e-30 Identity = 57/104 (54.81%), Postives = 73/104 (70.19%), Query Frame = 1
Query: 4 QMRPFIQAATFLFAVFVLISPAHAVDPVFHVD---GKAIRGYDPVAYFTQEKAVEGSPAHSIEYNGATWQFASAENRELFAANPEKYAPAYGGYCAFAVANNYT 306
++ + A + +F+ L A A++PV+ GKAI+GYDPVAYFTQ K VEGS + E+ GA WQFASAE+R+LF ANPEKYAP YGGYCA+AV+ YT
Sbjct: 5 MLKSVLMAFSLMFSAIALSPAALAIEPVYSDYFGYGKAIKGYDPVAYFTQGKPVEGSSDYQYEWMGADWQFASAEHRDLFVANPEKYAPQYGGYCAWAVSEGYT 108
BLAST of mRNA_L-digitata_M_contig99208.1.1 vs. uniprot
Match: A0A511QNB6_9VIBR (YHS domain-containing protein n=1 Tax=Vibrio superstes NBRC 103154 TaxID=1219062 RepID=A0A511QNB6_9VIBR) HSP 1 Score: 113 bits (282), Expect = 6.360e-30 Identity = 55/102 (53.92%), Postives = 73/102 (71.57%), Query Frame = 1
Query: 4 QMRPFIQAATFLFAVFVLISPAHAVDPVFH-VDGKAIRGYDPVAYFTQEKAVEGSPAHSIEYNGATWQFASAENRELFAANPEKYAPAYGGYCAFAVANNYT 306
+++ +Q + VF+LI PA AV+PV+ GKAI+GYDPVAYFT+ K VEGS + E+N ATW F+S++N+ F NPEKYAP YGGYCA+AV+ YT
Sbjct: 2 RLKGLLQLLSAFVLVFMLIRPALAVEPVYSDFFGKAIQGYDPVAYFTERKPVEGSKQYKYEWNDATWYFSSSKNKSAFIDNPEKYAPQYGGYCAWAVSQGYT 103
BLAST of mRNA_L-digitata_M_contig99208.1.1 vs. uniprot
Match: UPI0014247035 (YHS domain-containing protein n=1 Tax=Pelagibius litoralis TaxID=374515 RepID=UPI0014247035) HSP 1 Score: 112 bits (280), Expect = 1.600e-29 Identity = 54/96 (56.25%), Postives = 67/96 (69.79%), Query Frame = 1
Query: 19 IQAATFLFAVFVLISPAHAVDPVFHVDGKAIRGYDPVAYFTQEKAVEGSPAHSIEYNGATWQFASAENRELFAANPEKYAPAYGGYCAFAVANNYT 306
+ AA A + PA A+DPVF G AIRG+DPVAYFT+ VEG P + ++GA WQFASA NR+ FAA+PE+YAP YGGYCA+AV+ YT
Sbjct: 15 VMAAGLTAAALISARPAWAIDPVFTKGGLAIRGFDPVAYFTEGTPVEGKPLFTHRHDGALWQFASAANRDAFAADPERYAPQYGGYCAWAVSQGYT 110
BLAST of mRNA_L-digitata_M_contig99208.1.1 vs. uniprot
Match: A0A090RG79_9VIBR (YHS domain-containing protein n=2 Tax=Vibrio TaxID=662 RepID=A0A090RG79_9VIBR) HSP 1 Score: 110 bits (276), Expect = 4.880e-29 Identity = 55/101 (54.46%), Postives = 72/101 (71.29%), Query Frame = 1
Query: 7 MRPFIQAATFLFAVFVLISPAHAVDPVFH-VDGKAIRGYDPVAYFTQEKAVEGSPAHSIEYNGATWQFASAENRELFAANPEKYAPAYGGYCAFAVANNYT 306
MR F++ + + +F +S A+A++PV+ GKAI+GYDPVAYFT+ KAVEG E+NGA W F+S EN E FA NPE+YAP YGGYCA+AV+ YT
Sbjct: 1 MRLFLKLFSVVTLMFSFMSTAYALEPVYSDFFGKAIKGYDPVAYFTEGKAVEGDSDFQYEWNGADWYFSSQENLERFAGNPERYAPQYGGYCAWAVSKGYT 101
BLAST of mRNA_L-digitata_M_contig99208.1.1 vs. uniprot
Match: A0A657B4R4_9GAMM (YHS domain protein n=2 Tax=unclassified Oleiphilus TaxID=2631174 RepID=A0A657B4R4_9GAMM) HSP 1 Score: 110 bits (275), Expect = 6.920e-29 Identity = 53/101 (52.48%), Postives = 75/101 (74.26%), Query Frame = 1
Query: 7 MRPFIQAATFLFAVFVLISPAHAVDPVF-HVDGKAIRGYDPVAYFTQEKAVEGSPAHSIEYNGATWQFASAENRELFAANPEKYAPAYGGYCAFAVANNYT 306
M+ +++ +F+ + + ISPA+AV+ V+ GKAI GYDPVAYF+Q K V+G + E+NGATW FA+AEN++LF NPE++AP YGGYCA+AV+ YT
Sbjct: 1 MQTLLRSLSFVTLLTLFISPANAVEHVYTDFFGKAIEGYDPVAYFSQSKPVKGESEFTYEWNGATWYFANAENKQLFIDNPEQFAPQYGGYCAWAVSQGYT 101
BLAST of mRNA_L-digitata_M_contig99208.1.1 vs. uniprot
Match: A0A0B8QNT5_9VIBR (YHS domain-containing protein n=4 Tax=Vibrio TaxID=662 RepID=A0A0B8QNT5_9VIBR) HSP 1 Score: 110 bits (274), Expect = 1.040e-28 Identity = 55/95 (57.89%), Postives = 71/95 (74.74%), Query Frame = 1
Query: 25 AATFLFAVFVLISPAHAVDPVFH-VDGKAIRGYDPVAYFTQEKAVEGSPAHSIEYNGATWQFASAENRELFAANPEKYAPAYGGYCAFAVANNYT 306
+A F +VF+ + PA A++PV+ GKAI+GYDPVAYFT+ K VEGS H E+N ATW FAS +NR+ F A+PEK+AP YGGYCA+AV+ YT
Sbjct: 10 SAIFFVSVFISM-PALALEPVYSDFFGKAIQGYDPVAYFTESKPVEGSKKHKYEWNDATWYFASEKNRDAFKADPEKFAPQYGGYCAWAVSQGYT 103
BLAST of mRNA_L-digitata_M_contig99208.1.1 vs. uniprot
Match: A0A6M8WE91_9PROT (YHS domain-containing protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A6M8WE91_9PROT) HSP 1 Score: 110 bits (274), Expect = 1.070e-28 Identity = 52/80 (65.00%), Postives = 60/80 (75.00%), Query Frame = 1
Query: 67 AHAVDPVFHVDGKAIRGYDPVAYFTQEKAVEGSPAHSIEYNGATWQFASAENRELFAANPEKYAPAYGGYCAFAVANNYT 306
A A +PVF AIRGYDPVAYF Q K V+G P S+EY GATW+FASAENR+ FAA P +YAP YGGYCA+AV+ YT
Sbjct: 25 AAAEEPVFSTRAGAIRGYDPVAYFAQGKPVKGDPRFSLEYQGATWRFASAENRDRFAAEPGRYAPQYGGYCAWAVSQGYT 104 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig99208.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig99208.1.1 >prot_L-digitata_M_contig99208.1.1 ID=prot_L-digitata_M_contig99208.1.1|Name=mRNA_L-digitata_M_contig99208.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=100bp MRPFIQAATFLFAVFVLISPAHAVDPVFHVDGKAIRGYDPVAYFTQEKAVback to top mRNA from alignment at L-digitata_M_contig99208:3..308- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig99208.1.1 ID=mRNA_L-digitata_M_contig99208.1.1|Name=mRNA_L-digitata_M_contig99208.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=306bp|location=Sequence derived from alignment at L-digitata_M_contig99208:3..308- (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig99208:3..308- >mRNA_L-digitata_M_contig99208.1.1 ID=mRNA_L-digitata_M_contig99208.1.1|Name=mRNA_L-digitata_M_contig99208.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=300bp|location=Sequence derived from alignment at L-digitata_M_contig99208:3..308- (Laminaria digitata LdigPH10_18mv male)back to top |