mRNA_L-digitata_M_contig99208.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig99208.1.1
Unique NamemRNA_L-digitata_M_contig99208.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig99208.1.1 vs. uniprot
Match: A0A2E8XTX8_9PROT (YHS domain protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2E8XTX8_9PROT)

HSP 1 Score: 145 bits (367), Expect = 3.660e-43
Identity = 71/100 (71.00%), Postives = 78/100 (78.00%), Query Frame = 1
Query:    7 MRPFIQAATFLFAVFVLISPAHAVDPVFHVDGKAIRGYDPVAYFTQEKAVEGSPAHSIEYNGATWQFASAENRELFAANPEKYAPAYGGYCAFAVANNYT 306
            MR  I  ATFLF  FV   PA AVDPVF+  GKAIRGYDPVAYFT+EKAV+G   HS  + GA WQF+SA N+ELFAANPEKYAP YGGYCA+AV NNYT
Sbjct:    1 MRIAISVATFLFIAFVSAGPALAVDPVFNTGGKAIRGYDPVAYFTEEKAVKGKSEHSFTFQGAIWQFSSAANQELFAANPEKYAPQYGGYCAWAVVNNYT 100          
BLAST of mRNA_L-digitata_M_contig99208.1.1 vs. uniprot
Match: UPI001872992E (YHS domain-containing protein n=1 Tax=Pelagibius sp. NBU2595 TaxID=2762760 RepID=UPI001872992E)

HSP 1 Score: 115 bits (289), Expect = 6.360e-31
Identity = 56/99 (56.57%), Postives = 68/99 (68.69%), Query Frame = 1
Query:   10 RPFIQAATFLFAVFVLISPAHAVDPVFHVDGKAIRGYDPVAYFTQEKAVEGSPAHSIEYNGATWQFASAENRELFAANPEKYAPAYGGYCAFAVANNYT 306
            R F+ AA           PA A+DP F+ DG AI+GYDPVAYFT+ K V G P  + ++ GATWQFASA NR+ FAA PE+YAP YGGYCA+AV+  YT
Sbjct:    9 RHFLAAAVAAGLAAGAAGPAQALDPTFNTDGLAIQGYDPVAYFTEGKPVYGKPEFTYDFAGATWQFASAANRDTFAAEPERYAPQYGGYCAWAVSEGYT 107          
BLAST of mRNA_L-digitata_M_contig99208.1.1 vs. uniprot
Match: A0A7G7ZDK5_9GAMM (YHS domain protein n=2 Tax=Halomonas sp. SH5A2 TaxID=2749040 RepID=A0A7G7ZDK5_9GAMM)

HSP 1 Score: 114 bits (286), Expect = 1.670e-30
Identity = 54/78 (69.23%), Postives = 61/78 (78.21%), Query Frame = 1
Query:   61 SPAHAVDPVFHVDGKAIRGYDPVAYFTQEKAVEGSPAHSIEYNGATWQFASAENRELFAANPEKYAPAYGGYCAFAVA 294
            SP    +PVF  DG AIRGYDPVAYFT +K V GS AH+ E+NG TW FA+AE+RE FAA PE YAPAYGGYCA+AVA
Sbjct:   22 SPVAEAEPVFAEDGIAIRGYDPVAYFTADKPVAGSSAHAFEWNGVTWHFANAEHRERFAAKPEMYAPAYGGYCAWAVA 99          
BLAST of mRNA_L-digitata_M_contig99208.1.1 vs. uniprot
Match: UPI000B3627E2 (YHS domain-containing protein n=1 Tax=Thaumasiovibrio occultus TaxID=1891184 RepID=UPI000B3627E2)

HSP 1 Score: 114 bits (285), Expect = 2.570e-30
Identity = 57/104 (54.81%), Postives = 73/104 (70.19%), Query Frame = 1
Query:    4 QMRPFIQAATFLFAVFVLISPAHAVDPVFHVD---GKAIRGYDPVAYFTQEKAVEGSPAHSIEYNGATWQFASAENRELFAANPEKYAPAYGGYCAFAVANNYT 306
             ++  + A + +F+   L   A A++PV+      GKAI+GYDPVAYFTQ K VEGS  +  E+ GA WQFASAE+R+LF ANPEKYAP YGGYCA+AV+  YT
Sbjct:    5 MLKSVLMAFSLMFSAIALSPAALAIEPVYSDYFGYGKAIKGYDPVAYFTQGKPVEGSSDYQYEWMGADWQFASAEHRDLFVANPEKYAPQYGGYCAWAVSEGYT 108          
BLAST of mRNA_L-digitata_M_contig99208.1.1 vs. uniprot
Match: A0A511QNB6_9VIBR (YHS domain-containing protein n=1 Tax=Vibrio superstes NBRC 103154 TaxID=1219062 RepID=A0A511QNB6_9VIBR)

HSP 1 Score: 113 bits (282), Expect = 6.360e-30
Identity = 55/102 (53.92%), Postives = 73/102 (71.57%), Query Frame = 1
Query:    4 QMRPFIQAATFLFAVFVLISPAHAVDPVFH-VDGKAIRGYDPVAYFTQEKAVEGSPAHSIEYNGATWQFASAENRELFAANPEKYAPAYGGYCAFAVANNYT 306
            +++  +Q  +    VF+LI PA AV+PV+    GKAI+GYDPVAYFT+ K VEGS  +  E+N ATW F+S++N+  F  NPEKYAP YGGYCA+AV+  YT
Sbjct:    2 RLKGLLQLLSAFVLVFMLIRPALAVEPVYSDFFGKAIQGYDPVAYFTERKPVEGSKQYKYEWNDATWYFSSSKNKSAFIDNPEKYAPQYGGYCAWAVSQGYT 103          
BLAST of mRNA_L-digitata_M_contig99208.1.1 vs. uniprot
Match: UPI0014247035 (YHS domain-containing protein n=1 Tax=Pelagibius litoralis TaxID=374515 RepID=UPI0014247035)

HSP 1 Score: 112 bits (280), Expect = 1.600e-29
Identity = 54/96 (56.25%), Postives = 67/96 (69.79%), Query Frame = 1
Query:   19 IQAATFLFAVFVLISPAHAVDPVFHVDGKAIRGYDPVAYFTQEKAVEGSPAHSIEYNGATWQFASAENRELFAANPEKYAPAYGGYCAFAVANNYT 306
            + AA    A  +   PA A+DPVF   G AIRG+DPVAYFT+   VEG P  +  ++GA WQFASA NR+ FAA+PE+YAP YGGYCA+AV+  YT
Sbjct:   15 VMAAGLTAAALISARPAWAIDPVFTKGGLAIRGFDPVAYFTEGTPVEGKPLFTHRHDGALWQFASAANRDAFAADPERYAPQYGGYCAWAVSQGYT 110          
BLAST of mRNA_L-digitata_M_contig99208.1.1 vs. uniprot
Match: A0A090RG79_9VIBR (YHS domain-containing protein n=2 Tax=Vibrio TaxID=662 RepID=A0A090RG79_9VIBR)

HSP 1 Score: 110 bits (276), Expect = 4.880e-29
Identity = 55/101 (54.46%), Postives = 72/101 (71.29%), Query Frame = 1
Query:    7 MRPFIQAATFLFAVFVLISPAHAVDPVFH-VDGKAIRGYDPVAYFTQEKAVEGSPAHSIEYNGATWQFASAENRELFAANPEKYAPAYGGYCAFAVANNYT 306
            MR F++  + +  +F  +S A+A++PV+    GKAI+GYDPVAYFT+ KAVEG      E+NGA W F+S EN E FA NPE+YAP YGGYCA+AV+  YT
Sbjct:    1 MRLFLKLFSVVTLMFSFMSTAYALEPVYSDFFGKAIKGYDPVAYFTEGKAVEGDSDFQYEWNGADWYFSSQENLERFAGNPERYAPQYGGYCAWAVSKGYT 101          
BLAST of mRNA_L-digitata_M_contig99208.1.1 vs. uniprot
Match: A0A657B4R4_9GAMM (YHS domain protein n=2 Tax=unclassified Oleiphilus TaxID=2631174 RepID=A0A657B4R4_9GAMM)

HSP 1 Score: 110 bits (275), Expect = 6.920e-29
Identity = 53/101 (52.48%), Postives = 75/101 (74.26%), Query Frame = 1
Query:    7 MRPFIQAATFLFAVFVLISPAHAVDPVF-HVDGKAIRGYDPVAYFTQEKAVEGSPAHSIEYNGATWQFASAENRELFAANPEKYAPAYGGYCAFAVANNYT 306
            M+  +++ +F+  + + ISPA+AV+ V+    GKAI GYDPVAYF+Q K V+G    + E+NGATW FA+AEN++LF  NPE++AP YGGYCA+AV+  YT
Sbjct:    1 MQTLLRSLSFVTLLTLFISPANAVEHVYTDFFGKAIEGYDPVAYFSQSKPVKGESEFTYEWNGATWYFANAENKQLFIDNPEQFAPQYGGYCAWAVSQGYT 101          
BLAST of mRNA_L-digitata_M_contig99208.1.1 vs. uniprot
Match: A0A0B8QNT5_9VIBR (YHS domain-containing protein n=4 Tax=Vibrio TaxID=662 RepID=A0A0B8QNT5_9VIBR)

HSP 1 Score: 110 bits (274), Expect = 1.040e-28
Identity = 55/95 (57.89%), Postives = 71/95 (74.74%), Query Frame = 1
Query:   25 AATFLFAVFVLISPAHAVDPVFH-VDGKAIRGYDPVAYFTQEKAVEGSPAHSIEYNGATWQFASAENRELFAANPEKYAPAYGGYCAFAVANNYT 306
            +A F  +VF+ + PA A++PV+    GKAI+GYDPVAYFT+ K VEGS  H  E+N ATW FAS +NR+ F A+PEK+AP YGGYCA+AV+  YT
Sbjct:   10 SAIFFVSVFISM-PALALEPVYSDFFGKAIQGYDPVAYFTESKPVEGSKKHKYEWNDATWYFASEKNRDAFKADPEKFAPQYGGYCAWAVSQGYT 103          
BLAST of mRNA_L-digitata_M_contig99208.1.1 vs. uniprot
Match: A0A6M8WE91_9PROT (YHS domain-containing protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A6M8WE91_9PROT)

HSP 1 Score: 110 bits (274), Expect = 1.070e-28
Identity = 52/80 (65.00%), Postives = 60/80 (75.00%), Query Frame = 1
Query:   67 AHAVDPVFHVDGKAIRGYDPVAYFTQEKAVEGSPAHSIEYNGATWQFASAENRELFAANPEKYAPAYGGYCAFAVANNYT 306
            A A +PVF     AIRGYDPVAYF Q K V+G P  S+EY GATW+FASAENR+ FAA P +YAP YGGYCA+AV+  YT
Sbjct:   25 AAAEEPVFSTRAGAIRGYDPVAYFAQGKPVKGDPRFSLEYQGATWRFASAENRDRFAAEPGRYAPQYGGYCAWAVSQGYT 104          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig99208.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E8XTX8_9PROT3.660e-4371.00YHS domain protein n=1 Tax=Alphaproteobacteria bac... [more]
UPI001872992E6.360e-3156.57YHS domain-containing protein n=1 Tax=Pelagibius s... [more]
A0A7G7ZDK5_9GAMM1.670e-3069.23YHS domain protein n=2 Tax=Halomonas sp. SH5A2 Tax... [more]
UPI000B3627E22.570e-3054.81YHS domain-containing protein n=1 Tax=Thaumasiovib... [more]
A0A511QNB6_9VIBR6.360e-3053.92YHS domain-containing protein n=1 Tax=Vibrio super... [more]
UPI00142470351.600e-2956.25YHS domain-containing protein n=1 Tax=Pelagibius l... [more]
A0A090RG79_9VIBR4.880e-2954.46YHS domain-containing protein n=2 Tax=Vibrio TaxID... [more]
A0A657B4R4_9GAMM6.920e-2952.48YHS domain protein n=2 Tax=unclassified Oleiphilus... [more]
A0A0B8QNT5_9VIBR1.040e-2857.89YHS domain-containing protein n=4 Tax=Vibrio TaxID... [more]
A0A6M8WE91_9PROT1.070e-2865.00YHS domain-containing protein n=1 Tax=Proteobacter... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig99208contigL-digitata_M_contig99208:3..308 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1185876.BN8_02780
PFAMsYHS
Model size306
Max annot lvl976|Bacteroidetes
Hectar predicted targeting categorysignal peptide
Exons1
Evalue3.07e-29
EggNOG OGsCOG3350@1|root,COG3350@2|Bacteria,4NR42@976|Bacteroidetes,47XU3@768503|Cytophagia
Descriptionmonooxygenase activity
Cds size300
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408650.0492964-CDS-L-digitata_M_contig99208:2..3021682408650.0492964-CDS-L-digitata_M_contig99208:2..302Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig99208 3..302 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408650.065363-UTR-L-digitata_M_contig99208:302..3081682408650.065363-UTR-L-digitata_M_contig99208:302..308Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig99208 303..308 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig99208.1.1prot_L-digitata_M_contig99208.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig99208 3..302 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig99208.1.1

>prot_L-digitata_M_contig99208.1.1 ID=prot_L-digitata_M_contig99208.1.1|Name=mRNA_L-digitata_M_contig99208.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=100bp
MRPFIQAATFLFAVFVLISPAHAVDPVFHVDGKAIRGYDPVAYFTQEKAV
EGSPAHSIEYNGATWQFASAENRELFAANPEKYAPAYGGYCAFAVANNYT
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mRNA from alignment at L-digitata_M_contig99208:3..308-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig99208.1.1 ID=mRNA_L-digitata_M_contig99208.1.1|Name=mRNA_L-digitata_M_contig99208.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=306bp|location=Sequence derived from alignment at L-digitata_M_contig99208:3..308- (Laminaria digitata LdigPH10_18mv male)
TTTCAAATGCGTCCATTCATTCAAGCCGCCACATTCCTGTTTGCTGTGTT CGTGCTGATCTCGCCGGCGCACGCCGTGGATCCGGTCTTCCATGTCGATG GCAAAGCGATCCGCGGGTACGACCCGGTGGCCTATTTCACTCAGGAGAAA GCCGTCGAAGGATCACCGGCTCACAGCATTGAATACAATGGCGCGACCTG GCAGTTCGCGTCTGCGGAGAACCGCGAATTGTTTGCTGCCAACCCCGAGA AATATGCGCCCGCCTATGGCGGATACTGCGCCTTTGCCGTTGCCAACAAC TATACA
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Coding sequence (CDS) from alignment at L-digitata_M_contig99208:3..308-

>mRNA_L-digitata_M_contig99208.1.1 ID=mRNA_L-digitata_M_contig99208.1.1|Name=mRNA_L-digitata_M_contig99208.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=300bp|location=Sequence derived from alignment at L-digitata_M_contig99208:3..308- (Laminaria digitata LdigPH10_18mv male)
ATGCGTCCATTCATTCAAGCCGCCACATTCCTGTTTGCTGTGTTCGTGCT
GATCTCGCCGGCGCACGCCGTGGATCCGGTCTTCCATGTCGATGGCAAAG
CGATCCGCGGGTACGACCCGGTGGCCTATTTCACTCAGGAGAAAGCCGTC
GAAGGATCACCGGCTCACAGCATTGAATACAATGGCGCGACCTGGCAGTT
CGCGTCTGCGGAGAACCGCGAATTGTTTGCTGCCAACCCCGAGAAATATG
CGCCCGCCTATGGCGGATACTGCGCCTTTGCCGTTGCCAACAACTATACA
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