mRNA_L-digitata_M_contig982.8.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig982.8.1
Unique NamemRNA_L-digitata_M_contig982.8.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig982.8.1 vs. uniprot
Match: D8LGM9_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGM9_ECTSI)

HSP 1 Score: 298 bits (762), Expect = 7.900e-96
Identity = 268/332 (80.72%), Postives = 295/332 (88.86%), Query Frame = 1 
Query:    1 RVTDEEVEEVVSALISIGLAVRNLSLASNDIGDAGARALARLLDDKPPVYRCALASLNLRGNSIGSEGCQVLAEHLRKNTTLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIRNTDMTEVGFTAVLAALRKGNSTIMELSIGSQLLRSREEVVACYVSRALETPRCVLRSLDLSSSRIGDEGAHMLRGALAGHPTMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDALAQGMECNASVERLFVWGNHFGQASLRRFSELDGGRFALVGVFIDVQPFLVDGVFHAAEK 996
            +VTDE+VE++V A+IS GLA+RN+S+ASNDIGDAG  +LARLLDD+PP Y   L+SL+LRGNSIGS+GCQ+L E LR+     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       TE GFTAVLA LR+GN+T+ ELSIGSQLLRSREEV AC+VSR LETP  +LR LDLS   IGDEGA++LRGAL GHPTMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDALA+GMECNASVERLFVWGNHFGQASL+RF  L GGRFALVGVF+DVQPF+VDGV+HAAEK
Sbjct:   43 QVTDEDVEKIVGAVISSGLAIRNISVASNDIGDAGVGSLARLLDDEPPSYSSVLSSLDLRGNSIGSKGCQLLTERLRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEAGFTAVLAVLREGNNTVRELSIGSQLLRSREEVAACHVSRTLETPPYMLRLLDLSGCGIGDEGAYVLRGALTGHPTMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDALAEGMECNASVERLFVWGNHFGQASLKRFGGLGGGRFALVGVFLDVQPFVVDGVYHAAEK 374
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig982.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LGM9_ECTSI7.900e-9680.72Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig982contigL-digitata_M_contig982:13433..17945 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LGM9
Preferred namelrrc34
PFAMsLRR_6
Model size1005
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons6
Evalue1.3e-96
EggNOG OGsKOG4308@1|root,KOG4308@2759|Eukaryota
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-10_002850.1
Descriptioninterleukin-8 biosynthetic process
Cds size1005
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig982.8.1prot_L-digitata_M_contig982.8.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig982 13433..17945 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408639.1667695-CDS-L-digitata_M_contig982:13432..134561682408639.1667695-CDS-L-digitata_M_contig982:13432..13456Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig982 13433..13456 +
1682408639.1841447-CDS-L-digitata_M_contig982:14424..146101682408639.1841447-CDS-L-digitata_M_contig982:14424..14610Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig982 14425..14610 +
1682408639.1965175-CDS-L-digitata_M_contig982:15243..153391682408639.1965175-CDS-L-digitata_M_contig982:15243..15339Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig982 15244..15339 +
1682408639.207963-CDS-L-digitata_M_contig982:16107..162601682408639.207963-CDS-L-digitata_M_contig982:16107..16260Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig982 16108..16260 +
1682408639.221718-CDS-L-digitata_M_contig982:16855..171661682408639.221718-CDS-L-digitata_M_contig982:16855..17166Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig982 16856..17166 +
1682408639.2337632-CDS-L-digitata_M_contig982:17710..179451682408639.2337632-CDS-L-digitata_M_contig982:17710..17945Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig982 17711..17945 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig982.8.1

>prot_L-digitata_M_contig982.8.1 ID=prot_L-digitata_M_contig982.8.1|Name=mRNA_L-digitata_M_contig982.8.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=335bp
RVTDEEVEEVVSALISIGLAVRNLSLASNDIGDAGARALARLLDDKPPVY
RCALASLNLRGNSIGSEGCQVLAEHLRKNTTLKSLDLSSNALGSEGGSYI
AQMLGDNSTVERLAIRNTDMTEVGFTAVLAALRKGNSTIMELSIGSQLLR
SREEVVACYVSRALETPRCVLRSLDLSSSRIGDEGAHMLRGALAGHPTMR
SLDLSRNRIGITGGQALANLLVGNSSLAKLGLRANLIGDEGARAFKVVLL
HSQTLTTLDLHSNDIHDSGLDALAQGMECNASVERLFVWGNHFGQASLRR
FSELDGGRFALVGVFIDVQPFLVDGVFHAAEKLA*
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mRNA from alignment at L-digitata_M_contig982:13433..17945+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig982.8.1 ID=mRNA_L-digitata_M_contig982.8.1|Name=mRNA_L-digitata_M_contig982.8.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=4513bp|location=Sequence derived from alignment at L-digitata_M_contig982:13433..17945+ (Laminaria digitata LdigPH10_18mv male)
CGCGTGACAGATGAAGAAGTAGAGGTACTTATCGTACTTGCGTGTTCAGT
GTGCTTCCTTGCCCGAAGTTACCGGTGGCATGACAATCGTACTCGTGGAC
AAAGTGTCGGTCATGTCATACAACTGGAGTACACGACAGTCAAATAAGAA
AACGAGCAATAAGAAGGGCAGGCTGAGCTTTATGGTACAGGAAAGTAAGA
AATTCAGAAGTCGTTATAATGAAGTTAGTGTAGAACGCACCACCCAATTA
TCAACTATAGCTGACGTTTTTCAATTTTTATAAAACTATCGTAAGAAACC
CAGCCTGGACCAGCTTTTCTGTTTCTTTCAAGGTATTACCTGTAGGTGTC
CTGTATTGTACAACAAACAACCCAGTATGTATTTAAGTAGCACTCGGGTA
GCAAGCAGTACAGCAGCAGTAAACCTCGGTCGGCGCATGTGATGCTGTCG
GTCGTTGCCGAGAGAGCGAGAATGTTTGGTTTGGGTTGCTGCGTTTGCGG
ATGAAGACGTTGTATACAGGTGTGCGTGCGTGCGGTGCTGTTTCTCTTCA
ACAATAGCACTGTACCTAAGAGACTACAGCACCGTATTCTCCGCACTCAA
CACATCAAGTCGACTTTTCGTCGACGGCTGGTGTTAGCTTCTATCATAAT
AATGACAAGCTGTCCTGTTACACAGAGGAGCACTACACAGGCAAGATGCC
GTGCCGTTCGGTTCGTCTTTCGGTCGGTTGGTCGGTCGGTCGGTCGGTTC
GTGCTTCGGTCTGTCAATCAGTCATTCGGTCGGTCGTTCATTCGGCCGTT
CATTCGGTTGGTCGGCCCTCCCTTGACCGCCGTGAGGAAGCCACTGATCT
GGAGCTTCGCCATCCCTTTCTGCTCGTCGACGCTGACTGGCGTCACCGAG
ACCTGCCCCTCCAGCCTCACTGCAACGCACTACAACGTCTGTACTCGCAT
GCTGACGACCCGCTTCCCCTGCTATTTATACCTCCCACGCAGGAAGTAGT
CAGCGCGCTAATATCTATCGGCCTCGCCGTGCGAAACCTGTCTCTGGCGA
GTAACGACATCGGGGACGCGGGGGCAAGGGCGCTAGCGCGATTGCTCGAC
GACAAGCCTCCTGTTTACCGCTGCGCCCTCGCGTCATTAAACCTCCGGGG
AAACAGCATCGGGTCTGAAGGATGCCAGGTTTGCTCGCTGCTGGCAGATG
GCGCGTTTGGCGCTCGCAATGTCATTGTTATTGGTTAATTGTGCTTTCAT
GTTAGATGGATTCACGTTAGAATATGGGTGAAGTGGGGTGGGGTGGGGTG
GGGTGGGGTGGGGCGGGGCCTGTCGTTCTTTTTTTATCACCTTTTTTGTT
GTAGGCAGAGATGTCTGCTGTTTGTTTTGCTTTTGGAGCTGTTCTTGAAC
GCTGCATTGAGCACAAATTGCAATGTGAAGCAGGATGCTAACATGATGAA
ACGCTGCTGTTCATATCAAGAGGTAGCCGTTCTTCTTTTCTCCGCCTTTT
AACCAGGACTTCCCCCGATTTCAGGGCGGTAATATGATGTACGAGCTCGT
CGAGCCTCGGTCCAGGAAACGACGAGGGTTTACACCATCATCTCGTCAAC
ATTGTCTCCACCATTATGTTTTCGAAAAACTGCTGTAACATGCACGAGAG
AAGAAGTGGCAACATCCCAGCCCTGTCGATGTTGCCTAATCGAACGTGAC
GCTATTATTCCGTCCAGGGTCGTCACCAACAAATAAAATGAAAGACCCCC
TCCTCCGCCTGGATCAACTCGCACGTACGTGCCCGTCTCCACCTCACGCT
ATTCGGTGCAGGTTCTCGCAGAGCACTTGAGAAAGAACACCACGCTCAAG
TCACTAGACCTAAGCTCGAATGCTTTGGGGAGCGAGGGGGGGTCCTACAT
TGCCCAGGTCAGCTCGCGCTCGGACGGCCATCGAGCTCGTTTTGGCTCGT
TTCCTTCCTATATTTACACATTTACACCCCCCGCACCTTGCGCTTCTCCT
GGCTTTGACTGACGAAAAACTCACCTGGTTGTTCTCCGTCTCTGATTGGC
CGAAGACGATGTTTAGTAACAATCGTTGTAGTCTACGGTGGATGGCGAAA
AAAGGTGCGATATGTCTCTTTGTGAGGATGGAACCGTTCGTTCTCCCCAA
CGTCTTTCCAATCCTAACCGGGCGAAAGTCGACGCGGCCTCTATCGTATG
TGTTACGGCGTTCGAAGCAGACGCCGTTGTGCCGATTATCCCCTAACCGA
AAACGAACCTTTAGCTTCCGTTCAGTTTCCATTGCTTGCGGAGCTTAGCA
CAACATTGTTATGCCGCCTGTTATGCCGCCGTCAAACGTCTGGTAGAGTT
ATTACGGAATCGCTGATGCACGGCCATGGCGAGGTGCGGCTACGTAGAAC
GGACAAAATCATTGCTATTCACTACTAGTTCTATTACTACTACTACTACT
ACTACTACTACTACTACTACTACTACTACAACAACAACTATAATACTACT
ACTATTGCTAATACTACGATTGTTGTTGTTGTCCTCACATTAACTCATCG
CCATACTCTAGTCCGTGGTCACGAGACAGGCTCCAGTAATACTGTAGACC
GTTGATGAGTAAACGGCGCTCAACGCATTTGCGGCCGCCAACGACACTTG
TGCTCGCGGTTGCTCCATCCCGCAGATGCTCGGCGACAATTCCACCGTGG
AACGTCTCGCCATACGCAACACCGACATGACCGAGGTGGGGTTCACCGCT
GTGCTAGCCGCCCTGCGAAAAGGGAACAGCACGATCATGGAGCTGAGCAT
TGGATCACAGCTGCTTCGTTCTCGCGAGGTATTTTGTACGACGAGCCGAG
AAAGCTTTCAGCAGCGCTACGCCGACGCACTTGTTGGCAAACCTCTGCGA
CCAGGGCTGTGTAGCACCTACCATGCATATATAGGTTCTCGTGTTTTTTT
TTCATTCTTAGGTTGCGCTGTAGAGACCTTTAGATCTGAATATGGAAAAT
CTGGCGTTCACTTCGCGATGCACCACGTATGTTATGCCACCACATGTGTC
CCTTTTCCCCCCGACATCTCAAAAACGAGACAGCGTCAGATTTTGGTGGA
TCGTCCATGGTGAGGTTCACTACACGAACCCTCGCCGTCGTTTCGTTTCT
ACTTTTACATACGCTTCGGTAGATCTGCGTGTTGCCGGTATCCTCATGAT
CTCGTGCCGTATTCTCCCGGCACTAAACGGCTGTGGTAAGACTAAGGCCT
CTACAATAATTGGGTGCAATAAGCCGTGAACATCAACATTGTCCTAACCG
CCACGTTTTCAATCAACTACGCCCCCCTCCCCCCCCCCTAGGTCATACGA
CTACGGCCATGCGTGATAATGAGTACACCCCCCCCTCCCCCCGCCGATTT
CTTGCGCTGTCGTCCAAAAATAGGAGGTTGTCGCATGCTACGTGTCGCGA
GCGCTCGAGACACCGCGATGTGTACTGAGGTCGCTCGACCTATCCTCTTC
CCGGATAGGAGACGAGGGGGCGCACATGTTGCGAGGCGCGCTCGCCGGAC
ACCCGACAATGCGATCTCTCGACCTTTCGCGGAACCGTATAGGCATCACC
GGGGGGCAAGCCCTCGCCAACCTCCTGGTCGGGAACTCGTCGTTAGCGAA
GCTGGGTCTCAGAGCCAACCTGATAGGAGACGAGGGGGCTAGAGCCTTCA
AAGTCGTATTGCTGCACAGCCAGACGCTCACCACGTAAGTTTGGCCAGTG
TACATACTCTGGTTCATTGGTCGTGGGGGTGGTGATTTTTCTGCGGTGGC
ATGGGTTTCTCTCTCTGTGCGAGGGTCTCGGGTTTGAGAGGTGTTTGTGC
GGCGTTCTACCTGTGGCGTAAACGGGCTTTGGGGTGCTATATAAAGGGGT
GCTGTGGGGGTATATGTGCAAGCTGGTTGTACCGTTCGACGCCATTGTGT
TTTGTGTCGACGAATACGAAAGTAGCTTGCCCACCAATACATGTTTAGTT
TGCCGGAGTGACTGAGGGTACCGTGGTTCTTAGAGCGTTGTTCGACCTGG
TTAATGGTGGCAATGTACATACTGCATGTGGCCGACTATCGTGGTAGTCA
AGCGAGGCTCATAACCTGTTGGCAATGTATGTGCTTAGAGTAGACCCTAG
TAGCCCATGTACGCGTATACCCATTTTGTGTACATACGAGTGTCAAAACG
TACGCATACATGATGCCACAACGCGCGCATGTCTTGACGACACCTTTCAA
CCCCGTCTTACAAACGAATAACGAACAGGCTCGATTTACACAGCAACGAC
ATACACGACTCAGGCCTGGATGCCCTGGCGCAAGGAATGGAGTGCAACGC
GTCAGTGGAGCGCCTATTTGTGTGGGGGAACCACTTCGGGCAGGCATCGC
TGCGGCGGTTCAGCGAGTTGGACGGGGGGCGTTTCGCCTTGGTTGGCGTT
TTTATCGACGTCCAGCCCTTCCTCGTGGACGGAGTGTTTCACGCAGCCGA
AAAGCTGGCTTGA
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Coding sequence (CDS) from alignment at L-digitata_M_contig982:13433..17945+

>mRNA_L-digitata_M_contig982.8.1 ID=mRNA_L-digitata_M_contig982.8.1|Name=mRNA_L-digitata_M_contig982.8.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=1005bp|location=Sequence derived from alignment at L-digitata_M_contig982:13433..17945+ (Laminaria digitata LdigPH10_18mv male)
CGCGTGACAGATGAAGAAGTAGAGGAAGTAGTCAGCGCGCTAATATCTAT
CGGCCTCGCCGTGCGAAACCTGTCTCTGGCGAGTAACGACATCGGGGACG
CGGGGGCAAGGGCGCTAGCGCGATTGCTCGACGACAAGCCTCCTGTTTAC
CGCTGCGCCCTCGCGTCATTAAACCTCCGGGGAAACAGCATCGGGTCTGA
AGGATGCCAGGTTCTCGCAGAGCACTTGAGAAAGAACACCACGCTCAAGT
CACTAGACCTAAGCTCGAATGCTTTGGGGAGCGAGGGGGGGTCCTACATT
GCCCAGATGCTCGGCGACAATTCCACCGTGGAACGTCTCGCCATACGCAA
CACCGACATGACCGAGGTGGGGTTCACCGCTGTGCTAGCCGCCCTGCGAA
AAGGGAACAGCACGATCATGGAGCTGAGCATTGGATCACAGCTGCTTCGT
TCTCGCGAGGAGGTTGTCGCATGCTACGTGTCGCGAGCGCTCGAGACACC
GCGATGTGTACTGAGGTCGCTCGACCTATCCTCTTCCCGGATAGGAGACG
AGGGGGCGCACATGTTGCGAGGCGCGCTCGCCGGACACCCGACAATGCGA
TCTCTCGACCTTTCGCGGAACCGTATAGGCATCACCGGGGGGCAAGCCCT
CGCCAACCTCCTGGTCGGGAACTCGTCGTTAGCGAAGCTGGGTCTCAGAG
CCAACCTGATAGGAGACGAGGGGGCTAGAGCCTTCAAAGTCGTATTGCTG
CACAGCCAGACGCTCACCACGCTCGATTTACACAGCAACGACATACACGA
CTCAGGCCTGGATGCCCTGGCGCAAGGAATGGAGTGCAACGCGTCAGTGG
AGCGCCTATTTGTGTGGGGGAACCACTTCGGGCAGGCATCGCTGCGGCGG
TTCAGCGAGTTGGACGGGGGGCGTTTCGCCTTGGTTGGCGTTTTTATCGA
CGTCCAGCCCTTCCTCGTGGACGGAGTGTTTCACGCAGCCGAAAAGCTGG
CTTGA
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