prot_L-digitata_M_contig982.8.1 (polypeptide) Laminaria digitata LdigPH10_18mv male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-digitata_M_contig982.8.1
Unique Nameprot_L-digitata_M_contig982.8.1
Typepolypeptide
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Sequence length335
Homology
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BLAST of mRNA_L-digitata_M_contig982.8.1 vs. uniprot
Match: D8LGM9_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGM9_ECTSI)

HSP 1 Score: 298 bits (762), Expect = 7.900e-96
Identity = 268/332 (80.72%), Postives = 295/332 (88.86%), Query Frame = 0 
Query:    1 RVTDEEVEEVVSALISIGLAVRNLSLASNDIGDAGARALARLLDDKPPVYRCALASLNLRGNSIGSEGCQVLAEHLRKNTTLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIRNTDMTEVGFTAVLAALRKGNSTIMELSIGSQLLRSREEVVACYVSRALETPRCVLRSLDLSSSRIGDEGAHMLRGALAGHPTMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDALAQGMECNASVERLFVWGNHFGQASLRRFSELDGGRFALVGVFIDVQPFLVDGVFHAAEK 332
            +VTDE+VE++V A+IS GLA+RN+S+ASNDIGDAG  +LARLLDD+PP Y   L+SL+LRGNSIGS+GCQ+L E LR+     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       TE GFTAVLA LR+GN+T+ ELSIGSQLLRSREEV AC+VSR LETP  +LR LDLS   IGDEGA++LRGAL GHPTMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDALA+GMECNASVERLFVWGNHFGQASL+RF  L GGRFALVGVF+DVQPF+VDGV+HAAEK
Sbjct:   43 QVTDEDVEKIVGAVISSGLAIRNISVASNDIGDAGVGSLARLLDDEPPSYSSVLSSLDLRGNSIGSKGCQLLTERLRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEAGFTAVLAVLREGNNTVRELSIGSQLLRSREEVAACHVSRTLETPPYMLRLLDLSGCGIGDEGAYVLRGALTGHPTMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDALAEGMECNASVERLFVWGNHFGQASLKRFGGLGGGRFALVGVFLDVQPFVVDGVYHAAEK 374
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig982.8.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LGM9_ECTSI7.900e-9680.72Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00368LRR_RI_2coord: 79..106
e-value: 0.0021
score: 27.3
coord: 168..195
e-value: 2.4
score: 14.5
coord: 51..78
e-value: 0.16
score: 21.1
coord: 252..279
e-value: 0.53
score: 19.1
coord: 196..223
e-value: 0.86
score: 17.6
coord: 224..251
e-value: 0.0027
score: 26.9
coord: 18..45
e-value: 0.0026
score: 27.0
coord: 107..134
e-value: 6.5
score: 11.4
NoneNo IPR availablePANTHERPTHR24107YNEIN REGULATORY COMPLEX SUBUNIT 5coord: 169..301
coord: 23..227
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 2..302
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 224..245
e-value: 0.053
score: 13.6
coord: 78..101
e-value: 4.7E-6
score: 26.3
coord: 54..73
e-value: 0.086
score: 13.0
coord: 24..40
e-value: 0.005
score: 16.8
coord: 196..218
e-value: 0.0032
score: 17.4
coord: 171..186
e-value: 0.011
score: 15.7
coord: 251..274
e-value: 2.3E-5
score: 24.1
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10Ribonuclease Inhibitorcoord: 154..308
e-value: 9.7E-33
score: 115.0
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10Ribonuclease Inhibitorcoord: 71..153
e-value: 1.9E-19
score: 72.0
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10Ribonuclease Inhibitorcoord: 1..70
e-value: 1.9E-10
score: 42.4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig982contigL-digitata_M_contig982:13433..17945 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig982.8.1mRNA_L-digitata_M_contig982.8.1Laminaria digitata LdigPH10_18mv malemRNAL-digitata_M_contig982 13433..17945 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-digitata_M_contig982.8.1 ID=prot_L-digitata_M_contig982.8.1|Name=mRNA_L-digitata_M_contig982.8.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=335bp
RVTDEEVEEVVSALISIGLAVRNLSLASNDIGDAGARALARLLDDKPPVY
RCALASLNLRGNSIGSEGCQVLAEHLRKNTTLKSLDLSSNALGSEGGSYI
AQMLGDNSTVERLAIRNTDMTEVGFTAVLAALRKGNSTIMELSIGSQLLR
SREEVVACYVSRALETPRCVLRSLDLSSSRIGDEGAHMLRGALAGHPTMR
SLDLSRNRIGITGGQALANLLVGNSSLAKLGLRANLIGDEGARAFKVVLL
HSQTLTTLDLHSNDIHDSGLDALAQGMECNASVERLFVWGNHFGQASLRR
FSELDGGRFALVGVFIDVQPFLVDGVFHAAEKLA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf