mRNA_L-digitata_M_contig100835.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100835.1.1
Unique NamemRNA_L-digitata_M_contig100835.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig100835.1.1 vs. uniprot
Match: A0A0K1EDP5_CHOCO (P/Homo B domain-containing protein n=2 Tax=Chondromyces crocatus TaxID=52 RepID=A0A0K1EDP5_CHOCO)

HSP 1 Score: 65.9 bits (159), Expect = 5.220e-10
Identity = 27/53 (50.94%), Postives = 34/53 (64.15%), Query Frame = 1
Query:    1 ICGDGQIEGMEQCDDKNFLPNDGCTSCMIDPGWVCVLAPSRCTDGPLVQYVDG 159
            +CGDG++EG E CDD N  PNDGCTSC ID G++C   PS C     +   +G
Sbjct:   68 VCGDGRVEGAEACDDGNTTPNDGCTSCGIDDGFLCQGQPSVCELSTRIVVTEG 120          
BLAST of mRNA_L-digitata_M_contig100835.1.1 vs. uniprot
Match: A0CAA5_PARTE (Uncharacterized protein n=1 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0CAA5_PARTE)

HSP 1 Score: 60.1 bits (144), Expect = 9.580e-8
Identity = 23/35 (65.71%), Postives = 28/35 (80.00%), Query Frame = 1
Query:    4 CGDGQIEGMEQCDDKNFLPNDGCTSCMIDPGWVCV 108
            CGDG I G EQCDD N +P DGCT+C+IDPG+ C+
Sbjct: 1344 CGDGLILGSEQCDDVNTIPRDGCTNCLIDPGFNCI 1378          
BLAST of mRNA_L-digitata_M_contig100835.1.1 vs. uniprot
Match: A0A2D0R7Q7_ICTPU (pappalysin-2 n=4 Tax=Siluroidei TaxID=1489793 RepID=A0A2D0R7Q7_ICTPU)

HSP 1 Score: 59.7 bits (143), Expect = 1.300e-7
Identity = 24/43 (55.81%), Postives = 31/43 (72.09%), Query Frame = 1
Query:    1 ICGDGQIEGMEQCDDKNFLPNDGCTS-CMIDPGWVCVLAPSRC 126
             CGDGQ++GME+CDD N L  DGC+  C ++PG+ CV  PS C
Sbjct: 1107 FCGDGQLQGMEECDDGNLLDRDGCSKKCSMEPGFNCVGQPSHC 1149          
BLAST of mRNA_L-digitata_M_contig100835.1.1 vs. uniprot
Match: UPI0013D6DCF2 (EGF domain-containing protein n=1 Tax=Myxococcus vastator TaxID=2709664 RepID=UPI0013D6DCF2)

HSP 1 Score: 59.3 bits (142), Expect = 1.540e-7
Identity = 24/45 (53.33%), Postives = 31/45 (68.89%), Query Frame = 1
Query:    1 ICGDGQIEGMEQCDDKNFLPNDGC-TSCMIDPGWVCVLAPSRCTD 132
            +CG+G++   EQCDD N  P DGC  SC ++PG+ C  APS CTD
Sbjct:  188 LCGNGELNAGEQCDDGNVAPGDGCGASCQVEPGYTCSGAPSVCTD 232          
BLAST of mRNA_L-digitata_M_contig100835.1.1 vs. uniprot
Match: A0A8C9S6E6_SCLFO (Pappalysin 2 n=2 Tax=Scleropages formosus TaxID=113540 RepID=A0A8C9S6E6_SCLFO)

HSP 1 Score: 58.9 bits (141), Expect = 2.400e-7
Identity = 27/61 (44.26%), Postives = 38/61 (62.30%), Query Frame = 1
Query:    1 ICGDGQIEGMEQCDDKNFLPNDGCTS-CMIDPGWVCVLAPSRCTDGPLVQYVDGANPNCDE 180
             CGDGQ++G EQCDD+N L  DGC+  C+++PG+ C   PS+C       YV   +  C+E
Sbjct: 1090 FCGDGQLQGEEQCDDENLLDGDGCSKKCLMEPGFNCDGEPSQC-------YVFDGDGVCEE 1143          
BLAST of mRNA_L-digitata_M_contig100835.1.1 vs. uniprot
Match: UPI001EE9CF3D (pappalysin-2 n=1 Tax=Silurus meridionalis TaxID=175797 RepID=UPI001EE9CF3D)

HSP 1 Score: 58.9 bits (141), Expect = 2.400e-7
Identity = 27/54 (50.00%), Postives = 33/54 (61.11%), Query Frame = 1
Query:    1 ICGDGQIEGMEQCDDKNFLPNDGCTS-CMIDPGWVCVLAPSRCTDGPLVQYVDG 159
             CGDGQ++GME+CDD N L  DGC+  C  +PG+ CV  PS C       Y DG
Sbjct: 1104 FCGDGQLQGMEECDDGNLLDRDGCSKKCSKEPGFNCVGQPSHC------YYYDG 1151          
BLAST of mRNA_L-digitata_M_contig100835.1.1 vs. uniprot
Match: A0A842WRB7_9ARCH (Uncharacterized protein n=2 Tax=Archaea TaxID=2157 RepID=A0A842WRB7_9ARCH)

HSP 1 Score: 58.9 bits (141), Expect = 2.450e-7
Identity = 28/58 (48.28%), Postives = 35/58 (60.34%), Query Frame = 1
Query:    1 ICGDGQIEGMEQCDDKNFLPNDGCT-SCMIDPGWVCVLAPSRCTDGPLVQYVDGANPN 171
            +CGDG I+G E+CDD N    DGC+ SC I+PG+VC   PS C    +   VD   PN
Sbjct: 2697 MCGDGVIDGAEECDDDNMNNGDGCSDSCEIEPGYVCTGEPSSCEQATMS--VDITTPN 2752          
BLAST of mRNA_L-digitata_M_contig100835.1.1 vs. uniprot
Match: A0A7J6B450_AMEME (Sushi domain-containing protein n=1 Tax=Ameiurus melas TaxID=219545 RepID=A0A7J6B450_AMEME)

HSP 1 Score: 58.2 bits (139), Expect = 4.310e-7
Identity = 24/43 (55.81%), Postives = 30/43 (69.77%), Query Frame = 1
Query:    1 ICGDGQIEGMEQCDDKNFLPNDGCTS-CMIDPGWVCVLAPSRC 126
             CGDGQ++GME+CDD N L  DGC+  C  +PG+ CV  PS C
Sbjct:  408 FCGDGQLQGMEECDDGNLLDRDGCSKKCSKEPGFNCVGQPSHC 450          
BLAST of mRNA_L-digitata_M_contig100835.1.1 vs. uniprot
Match: UPI00147F2FC2 (pappalysin-2 isoform X2 n=1 Tax=Pangasianodon hypophthalmus TaxID=310915 RepID=UPI00147F2FC2)

HSP 1 Score: 58.2 bits (139), Expect = 4.410e-7
Identity = 23/43 (53.49%), Postives = 31/43 (72.09%), Query Frame = 1
Query:    1 ICGDGQIEGMEQCDDKNFLPNDGCTS-CMIDPGWVCVLAPSRC 126
             CGDGQ++G+E+CDD N L  DGC+  C ++PG+ CV  PS C
Sbjct: 1100 FCGDGQLQGIEECDDGNLLDRDGCSKKCSMEPGFNCVGQPSHC 1142          
BLAST of mRNA_L-digitata_M_contig100835.1.1 vs. uniprot
Match: A0A836BYW7_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BYW7_9CHLO)

HSP 1 Score: 57.8 bits (138), Expect = 5.920e-7
Identity = 24/45 (53.33%), Postives = 30/45 (66.67%), Query Frame = 1
Query:    4 CGDGQIEGMEQCDDKNFLPNDGCTS-CMIDPGWVCVLAPSRCTDG 135
            CG+G +EG EQCDD      DGC++ C I+PGW C  +PS CT G
Sbjct:  901 CGNGAVEGAEQCDDGGVTDGDGCSAACRIEPGWTCEGSPSVCTRG 945          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100835.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0K1EDP5_CHOCO5.220e-1050.94P/Homo B domain-containing protein n=2 Tax=Chondro... [more]
A0CAA5_PARTE9.580e-865.71Uncharacterized protein n=1 Tax=Paramecium tetraur... [more]
A0A2D0R7Q7_ICTPU1.300e-755.81pappalysin-2 n=4 Tax=Siluroidei TaxID=1489793 RepI... [more]
UPI0013D6DCF21.540e-753.33EGF domain-containing protein n=1 Tax=Myxococcus v... [more]
A0A8C9S6E6_SCLFO2.400e-744.26Pappalysin 2 n=2 Tax=Scleropages formosus TaxID=11... [more]
UPI001EE9CF3D2.400e-750.00pappalysin-2 n=1 Tax=Silurus meridionalis TaxID=17... [more]
A0A842WRB7_9ARCH2.450e-748.28Uncharacterized protein n=2 Tax=Archaea TaxID=2157... [more]
A0A7J6B450_AMEME4.310e-755.81Sushi domain-containing protein n=1 Tax=Ameiurus m... [more]
UPI00147F2FC24.410e-753.49pappalysin-2 isoform X2 n=1 Tax=Pangasianodon hypo... [more]
A0A836BYW7_9CHLO5.920e-753.33Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100835contigL-digitata_M_contig100835:38..463 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog5911.EAS01936
PFAMsDUF4215
Model size426
Max annot lvl5878|Ciliophora
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.44e-05
EggNOG OGsCOG1404@1|root,KOG3525@2759|Eukaryota,3ZBAS@5878|Ciliophora
DescriptionDomain of unknown function (DUF4215)
Cds size399
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406611.554884-CDS-L-digitata_M_contig100835:37..4361682406611.554884-CDS-L-digitata_M_contig100835:37..436Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100835 38..436 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406611.5626202-UTR-L-digitata_M_contig100835:436..4631682406611.5626202-UTR-L-digitata_M_contig100835:436..463Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig100835 437..463 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100835.1.1prot_L-digitata_M_contig100835.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100835 38..436 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100835.1.1

>prot_L-digitata_M_contig100835.1.1 ID=prot_L-digitata_M_contig100835.1.1|Name=mRNA_L-digitata_M_contig100835.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=133bp
MEQCDDKNFLPNDGCTSCMIDPGWVCVLAPSRCTDGPLVQYVDGANPNCD
EGDDENGEPWCFIDDALDESPDPELVLVSPGSYLEALVIDSGTEVLLHAP
QGATISDSGVSVLVRSGGRAIVPGFAPEAGVTV
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mRNA from alignment at L-digitata_M_contig100835:38..463-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100835.1.1 ID=mRNA_L-digitata_M_contig100835.1.1|Name=mRNA_L-digitata_M_contig100835.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=426bp|location=Sequence derived from alignment at L-digitata_M_contig100835:38..463- (Laminaria digitata LdigPH10_18mv male)
ATCTGTGGGGATGGCCAGATCGAAGGCATGGAGCAGTGCGATGACAAAAA CTTCCTGCCCAATGATGGCTGCACCAGCTGCATGATCGACCCCGGCTGGG TCTGTGTGCTCGCGCCGAGCCGCTGCACCGACGGCCCCTTAGTGCAGTAC GTGGATGGCGCAAATCCCAACTGCGACGAAGGCGACGATGAAAACGGCGA GCCCTGGTGCTTCATTGATGATGCCCTGGACGAGAGCCCAGACCCGGAGC TGGTGCTCGTCTCCCCGGGCAGCTACCTCGAGGCCCTCGTCATCGACTCG GGCACGGAGGTCCTGCTGCACGCGCCCCAAGGCGCGACCATCTCGGACAG CGGGGTGTCTGTGCTCGTTCGCTCCGGCGGGCGCGCCATCGTACCCGGCT TCGCCCCCGAGGCGGGCGTTACGGTC
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Coding sequence (CDS) from alignment at L-digitata_M_contig100835:38..463-

>mRNA_L-digitata_M_contig100835.1.1 ID=mRNA_L-digitata_M_contig100835.1.1|Name=mRNA_L-digitata_M_contig100835.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=399bp|location=Sequence derived from alignment at L-digitata_M_contig100835:38..463- (Laminaria digitata LdigPH10_18mv male)
ATGGAGCAGTGCGATGACAAAAACTTCCTGCCCAATGATGGCTGCACCAG
CTGCATGATCGACCCCGGCTGGGTCTGTGTGCTCGCGCCGAGCCGCTGCA
CCGACGGCCCCTTAGTGCAGTACGTGGATGGCGCAAATCCCAACTGCGAC
GAAGGCGACGATGAAAACGGCGAGCCCTGGTGCTTCATTGATGATGCCCT
GGACGAGAGCCCAGACCCGGAGCTGGTGCTCGTCTCCCCGGGCAGCTACC
TCGAGGCCCTCGTCATCGACTCGGGCACGGAGGTCCTGCTGCACGCGCCC
CAAGGCGCGACCATCTCGGACAGCGGGGTGTCTGTGCTCGTTCGCTCCGG
CGGGCGCGCCATCGTACCCGGCTTCGCCCCCGAGGCGGGCGTTACGGTC
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