mRNA_L-digitata_M_contig1008.6.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig1008.6.1
Unique NamemRNA_L-digitata_M_contig1008.6.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig1008.6.1 vs. uniprot
Match: D7G903_ECTSI (Cilia- and flagella-associated protein 43 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G903_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 4.610e-35
Identity = 78/85 (91.76%), Postives = 80/85 (94.12%), Query Frame = 2 
Query:    2 YRLHVEQAREEIEALQAEDRVMERNFKKEIQEAASNPIDMAEMMAQLVQLYKLRDHGAMSTGGSSGYRGSATGMTNRTSNRKSQS 256
            YRLHVEQAREEIE LQAEDR+MERNFKKEIQEAASNPIDMAEMMAQLVQLYKLRDH  MSTGGSSGYRGSATGM+N TS RKSQS
Sbjct: 1258 YRLHVEQAREEIETLQAEDRLMERNFKKEIQEAASNPIDMAEMMAQLVQLYKLRDHSTMSTGGSSGYRGSATGMSNATSYRKSQS 1342
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BLAST of mRNA_L-digitata_M_contig1008.6.1 vs. uniprot
Match: D7G902_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G902_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 2.020e-25
Identity = 57/64 (89.06%), Postives = 59/64 (92.19%), Query Frame = 1 
Query:  388 QAMRQATNREKAAKIAEKDPFGPVDEQLDRSAASEEANAATMAQDLEYPGFEVEDQVWNRLLEL 579
            +AMRQATNREKAAKIAEKDPFGPVDEQLD+S ASE  N A MAQDLEYPGFEVEDQVWNRLLEL
Sbjct:   35 EAMRQATNREKAAKIAEKDPFGPVDEQLDKSNASEAVNTAAMAQDLEYPGFEVEDQVWNRLLEL 98
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BLAST of mRNA_L-digitata_M_contig1008.6.1 vs. uniprot
Match: A0A6H5KRL2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRL2_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 2.250e-22
Identity = 53/60 (88.33%), Postives = 55/60 (91.67%), Query Frame = 1 
Query:  400 QATNREKAAKIAEKDPFGPVDEQLDRSAASEEANAATMAQDLEYPGFEVEDQVWNRLLEL 579
            +ATNREKAAKIAEKDPFGPVDEQLD+S ASE  N A MAQDLEYPGFEVEDQVWNRLLEL
Sbjct:  415 EATNREKAAKIAEKDPFGPVDEQLDKSNASEAVNTAAMAQDLEYPGFEVEDQVWNRLLEL 474
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BLAST of mRNA_L-digitata_M_contig1008.6.1 vs. uniprot
Match: A0A835YXJ9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXJ9_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 9.060e-14
Identity = 63/117 (53.85%), Postives = 79/117 (67.52%), Query Frame = 2 
Query:   65 MERNFKKEIQEAASNPIDMAEMMAQLVQLYKLRDHGAMSTGG--SSGY-RGSATGMTNRTSN------RKSQSSRRTQNMRESAMGRSKRKRGSRVSSGGGSMRASHG-LGPLQEVM 385
            +ERNFKK+IQEAASNPIDMA+ MAQLV+LYKLR+  A S  G  SSGY RGSA GM++          ++   S+++ N+RES+M        SR+SSGGGS  A  G LGP+QE M
Sbjct: 1518 LERNFKKDIQEAASNPIDMADTMAQLVKLYKLRESDARSQFGYGSSGYGRGSAFGMSSARMXXXXXXXQRHNMSQQSTNLRESSMA------VSRMSSGGGSRAAGAGSLGPMQEAM 1628
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig1008.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G903_ECTSI4.610e-3591.76Cilia- and flagella-associated protein 43 n=1 Tax=... [more]
D7G902_ECTSI2.020e-2589.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KRL2_9PHAE2.250e-2288.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YXJ9_9STRA9.060e-1453.85Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig1008contigL-digitata_M_contig1008:14100..19406 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G903
Preferred nameCFAP43
PFAMsWD40
Model size581
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0001932,GO:0001933,GO:0003674,GO:0004857,GO:0004860,GO:0006469,GO:0008150,GO:0009892,GO:0009966,GO:0009968,GO:0010563,GO:0010605,GO:0010646,GO:0010648,GO:0010941,GO:0019207,GO:0019210,GO:0019220,GO:0019222,GO:0019887,GO:0023051,GO:0023057,GO:0030234,GO:0031323,GO:0031324,GO:0031399,GO:0031400,GO:0032268,GO:0032269,GO:0033673,GO:0042325,GO:0042326,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043086,GO:0043549,GO:0044092,GO:0045859,GO:0045936,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051172,GO:0051174,GO:0051246,GO:0051248,GO:0051338,GO:0051348,GO:0060255,GO:0060548,GO:0065007,GO:0065009,GO:0080090,GO:0098772,GO:1902041,GO:1902042,GO:2001233,GO:2001234,GO:2001236,GO:2001237
Exons6
Evalue7.41e-26
EggNOG OGs2CME1@1|root,2QQ39@2759|Eukaryota
Cds size333
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig1008.6.1prot_L-digitata_M_contig1008.6.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig1008 15730..18234 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406611.003261-UTR-L-digitata_M_contig1008:14099..141611682406611.003261-UTR-L-digitata_M_contig1008:14099..14161Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig1008 14100..14161 -
1682406611.013225-UTR-L-digitata_M_contig1008:15607..157291682406611.013225-UTR-L-digitata_M_contig1008:15607..15729Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig1008 15608..15729 -
1682406611.0691402-UTR-L-digitata_M_contig1008:18234..182491682406611.0691402-UTR-L-digitata_M_contig1008:18234..18249Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig1008 18235..18249 -
1682406611.0777054-UTR-L-digitata_M_contig1008:19357..194061682406611.0777054-UTR-L-digitata_M_contig1008:19357..19406Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig1008 19358..19406 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406611.0226803-CDS-L-digitata_M_contig1008:15729..157431682406611.0226803-CDS-L-digitata_M_contig1008:15729..15743Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig1008 15730..15743 -
1682406611.0403194-CDS-L-digitata_M_contig1008:16379..165041682406611.0403194-CDS-L-digitata_M_contig1008:16379..16504Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig1008 16380..16504 -
1682406611.0504253-CDS-L-digitata_M_contig1008:17681..177911682406611.0504253-CDS-L-digitata_M_contig1008:17681..17791Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig1008 17682..17791 -
1682406611.0612385-CDS-L-digitata_M_contig1008:18150..182341682406611.0612385-CDS-L-digitata_M_contig1008:18150..18234Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig1008 18151..18234 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig1008.6.1

>prot_L-digitata_M_contig1008.6.1 ID=prot_L-digitata_M_contig1008.6.1|Name=mRNA_L-digitata_M_contig1008.6.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=111bp
MERNFKKEIQEAASNPIDMAEMMAQLVQLYKLRDHGAMSTGGSSGYRGSA
TGMTNRTSNRKSQSSRRTQNMRESAMGRSKRKRGSRVSSGGGSMRASHGL
GPLQEVMARQ*
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mRNA from alignment at L-digitata_M_contig1008:14100..19406-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig1008.6.1 ID=mRNA_L-digitata_M_contig1008.6.1|Name=mRNA_L-digitata_M_contig1008.6.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=5307bp|location=Sequence derived from alignment at L-digitata_M_contig1008:14100..19406- (Laminaria digitata LdigPH10_18mv male)
CTATCGGCTGCATGTAGAGCAGGCTCGAGAAGAGATAGAAGCCTTGCAGG
TGAGCAAAGCGCATTTGTTTCGTGTGCAGTGTGCAGGGAGAGTCGCGCCG
GGAAGTACGCAGTGGACATCGTCGCAGCAAAACAGTTGCTATCTACCAGT
GTCGTGTCGTTGGCAGCGCTATATACCCTCCACTCACCTCAGGCTGTTAC
CGACGTACCAGGTTGTTGTTGTTGTCGTTGTTGTTGTTGTTGTTGTCGTT
GTTGTCGTTGTTGTTGTTGTTGTTGCTGTTGTTGCTGTTGTTGTTGTCGT
TGTCGTTGTTGTCGTTGTTGTTGTTGTTGCTGTTGTTGTCGTTTTTGTTG
TTGTTGTCGTGTTAAAATATCGCCACAGTCTAGTCCGTGGTCGCAGGACA
GAGTAATCTAAGGCAAACGAGGGCTGCACAAACCTTGGCCCAGCTTCGAC
AAAATGGTTGAAAATGCACTCGGCTTTAAAATCTAGCCCCAATCTCAACT
GTTATATAAGATAACCTGAAAAATACTTCCGGATCCCCAGAAAATGGAAA
CGCTTAGGTTGGTGACGTGACGACCCGTATATCCGGTCTATCCTGAGTAA
CCCCGCCGTTACGGGGGGGGGAGAGTGTTATAAGGCGTGGTTTGGGTAGG
TGATTGGTTAACCTTCACCAGTAGCTCAACAGACTATCACCTTAGCACAA
CCCTAACCTACCCCTGGGGAATTTCTCGGGGTGAAGATGTAACGAGGAGT
CATTAGTTGTATGGACTATGAACCACTTTGTTGAAGCTGGGGCCTATTCG
TAAACACTATCTGGTGCCCGAGGTGTTGCAGTGCGGCGGCCATTTACCAA
GGAATTTTCTTCGTGAACTTGGCTTACCCGTACCCGGTAGATCGTTTTTC
GCAGACTCAACCACCCGATCTGAACATTCATTGCTGTGGTTTAGCGGCTT
ATGTCTGTCCAAGTGGTTTAGCGCAATCTGTTATTAATAGTAGGAGAGAG
GGTTTCCCCCTGTGGGTGGGATCATTAGGAGGGGAGGAATCCCCCATTCG
ACCAGCCAAGCCCCGCCAAGCCCCCGCGATAGTTTACACATTCGAGTAAA
GCTATCACCTCAACTTTCGCGGTGGTCTGACGTGCTGCTTATATTTTTTT
TGTGCAGGCTGAGGATCGGGTGATGGAGAGAAATTTCAAGAAAGAGATCC
AAGAAGCGGCTTCGAACCCCATCGACATGGCCGAGATGATGGCACAATTA
GTGCAGGTATGCATAAGCATACACAAAAACACAAGTAGTAGAGGTACTTG
AGAGAATATACAAAAACGTAAGATGACCACATTTATTCACGTCACAAACC
GCCTAGAGAAACTCGCCTTGTACAATTTTTTCGTTTATTTTCCGTGTACG
AAAAGCTGCGACAAGATTTGTACAGGTATAATCTATACAAGAACGCGAGG
AAACCGCGAAAATCCGACCATATATAGTCGCCGTTCTCTGGTGACACGTT
GCCGTATGTACCGATAATTCTTCGCTCAAAATGTTGTTCGAAAGGTAATG
TGCACCCTCTCTCGCCTCTGCTGTCCTGTCCTGTCCTGTCATGTCATGTC
ATGCAATGTTTTCAGCTGTACAAGCTTCGCGATCACGGCGCCATGAGCAC
CGGGGGCTCTTCGGGCTATCGAGGGAGTGCCACGGGCATGACCAACAGGA
CCAGCAACCGAAAGTCGCAGTCGAGGTAACAGCCACAGCTATGATACTTA
CAGTAGGTAGCCCCCTTTATGAGACCCCGCGATACCTTTAGGAAAACGAT
GTATAAAGGAACTTCAAATTTCCGCGCACCGTTTTGGGCCACTATTGAAT
ACCAGGTACTCGTATAACAGATCAGTACCAACTCTGAGAAGCGGCGTTGG
TACATAAGGGACCTCTAATCCCAAACGCACTACTCGTAGGGTCCCTTAAA
AGGAGCTAACTACTGTACAATTTTTTCACGGGGAATGCTTCGGCGTAAAG
TGTCATACCGGCACCAATGGGACGAGACCCCCCTTCGAGAACTACACTTA
CGGCGCGATTTTTTTGTGTCCTTTTACCGGAGCATGCGAGCACACCAAGA
GCGCGATGCTGTCGTCCAGGCACCGATCATACTCCTTTCTTGGCTTTTAC
GTAAAACATAGTGGTATATACGTCGATGGCATGTCCGTGCTGCGGTCGAC
ACCGCCTGGCTTCTTCCACCCGGAACCGTTAACGTTCCTTTTGTGTTGCA
TGCGAGCCATATGATAGTCACGAAAATACGAGCATTGAGAGTGAGCCATG
GCACGGTAGGATGTGGTATTTTTCAGGGCTGTTCACGGGTCGGGTCAAGC
CTCGCGGGTCAGGTCAGGTCGGGTCGGGTCGGGTCGGGTCGGGTTGGGTC
GGGTCGGGTCGGGTCGGGTCGGGTAAGGGTGACCGGACCCGATCCGTGCG
AGTGTGAAACCTCTTGGCCCGACCGGAACAGACCCGACCCGACCCGACCC
GTGAGATTTCGAAACATTCTTGACCCGTGAAGAGCCCTAATACTTTTGGG
CTCATGTTTTTCTGGCTGGCCGGACCGGCCCCTCCACTGACGAAGTAACT
ACCCATTTTTGTAATTCCATTCGTGTTTCACGACGTTTTTCGTTAAATAC
CTAGCCCATACCTGGTACAATAGTATACTTCGTAGTAGTTTATCGTTCAT
CGGATTGCGAGTACAATGATTGTTTCTCAAATTGTACAATCGTTGTTGGA
TGAGGTACAGAGCTCTTCATGTTCAAAATAACCTGACAAAAAATGAAGCG
CCCCCCCCCCGCTATCGTGATAAGACTCACTAACCCCTGCTCTTACACGC
GAACGTCTGCACCGGGTCCTCGTTTCGTCCACGTGTGTCTTGTCGTCGAC
AGCCGCCGGACGCAAAACATGCGCGAAAGTGCCATGGGAAGGAGCAAGCG
GAAGAGGGGCAGCCGGGTTAGCAGCGGGGGCGGTAGCATGCGCGCGTCTC
ACGGGCTCGGACCTTTGCAAGAGGTAAATACACACTAACTCGACAAGTAC
TGGTATATTAAAAATATCATTTAAGTAAAATATTACCAGGTACCTGGTAG
AAAATATACAAAATATTGAAAAACATAAAACAAGCAACATTGAACGACAA
ATAAGTTATTGAGTGTAAGGCGCCCGCGTCGGGTCAACGCACGGTCAGCG
CTCCAACACATGCACCGGTATGGTGTGCATGATGGCTGAAAAAACTTTTT
AGAAGACGTAGAAAACAAAATTGCGTCGAAGCTCCGATGCGCAGACCACG
CTGTGACCCTCCTCGAGGGCGCTGTCTCCTTGAAGTTCCTTGACGATTTT
TTTTCATGCTTTTACACATTTTAGTTTCTCCGCCCTTGCCAGGACGTTAG
CAAGCACTTAGTCATTGCTTATTATTGCAATAATTGCATTACGCCTTACA
TCAGCACCCGTAAGCACCGAGCGTTGAGTAACTTCAATCCGAAACCTGCC
CAGTTGGCGGTTGGCTGCGCGACCTTCCGTCCGAAAACACCCTACTCGCG
TACGCTTGCTACCGCCGTGGGTACCGCCAGCTCACTCCCTCCCCTCTTTA
CTTTCCATCTCCCTCGCACACACGGTTATGGTACGGTTATTATGCGGTTA
TGATACGGTAACCTGGCCAGGCAATGAGGCAGGCGACCAACCGCGAGAAG
GCCGCGAAGATAGCCGAAAAGGACCCCTTCGGACCGGTGGACGAGCAGCT
AGACAGGAGCGCTGCCTCGGAGGAGGCCAACGCGGCCACCATGGCTCAGG
TACATAATTTTATTAATCCATGCTAATTCAAGGCATTCATTAGTTTCGAC
CTACGAGGCACACGATATGGTACGATGCAGTGCGAGAGAGGGAGGTGGGG
ATTGATGGATTGATGGATTGATGGATGCATGACGTATACATAAGGAATCA
AGACATTAATTAGTTTCCATACGAGGCACACGATAATTAAATAATTCATA
CTATTTCAAGTGATTAGTTAGTTTTCACCTTCGAGGCACACGATGTAGTA
CGGTTAGTACGGTTAGTACGGTGGGGGGTGGGGGGTGGATGAAATTAAGT
AATTTGTTGACTTGGGTTAGTGTTCCTTATTTGATGCATTTTTTTAGGAG
ACGGTATGGTATGATGCAGTGCAAGACAGGGAGGTGGGATCCTTATCCTT
CGTCAGGAAAGGCATTCAGATGAAAGTATACCGTATAGATTTCAGCCCGA
AAAAGTGATGAGCTGAATCGTATTTTTTTACTAGGCTAACGCGGCCACTA
TGGCTCAGGTATGACACGTACAATGCAAGAGAGGGAGGTGGGGTCTTTAT
CCGTTTCCGTGAAATGAAAGCAGATTCATGGATTTCGGCGCGAAAAATTG
ATAATATGATCGTTTTTTTTACCTTTTGCGACAAGTAGGGCAGCGAGACT
GATCTGTTGCTATTCTGTACCAATACGTAGCACTGTAACTGCAACATGGG
GTCTTGCGTGAAGATTGATTCACCTACGCCGGTTGGCCGTGTTATTGGTA
GGTGCCACACCTCTATCACATCAAAAGTACTGCATACCGTACCGTAGGTG
CTACGTACTCCGTACGTTTCAAGAAAACGACCAACCGCTAGAGCTCTAGA
CTATAACGTCAAGCTCATGCCAACGGTGTGAGGCGTTCGTCGTTCAACAC
TCTTAGCGTTGTACCAGGTATAAGACGAAAAGCGTTATATATATCTGGTG
TGTTTCGTAGCCTATTGATAGAACATCTATGCAGCGCCACCTCTACTGAA
CTCAACAGCAGCACCAATACGATCTACCTGGTATACTTAATTTCGTACTA
TCTTCGAGTTTATTCGGATAGCTTGTTGTACCGGAGTACAAAACGTACAG
CTGATGAGGCGCTGTGGACTGATTGCTCGCTGTGAGTCGCAATAGCCAGG
TCGATGAGGCAAACGCTTTAGAGCCGCTGTCAAGCGTATTCTGTAAGTCT
TCAAGTTTCTTCCGAACATTAAGGACATCGATGTCGGCGTCGCACCCCCC
CCCCCCGCATCAACCGATGACATGTATGTACACACGTGCTGCCCGCCTTA
CTGTTGTAACATTGCGTCGTAGTTTATTCGTATATAGTTTGGGATTAATG
AGGCCTCCTGCTGCGATCAGCCGGAGACTTTCACCCAGGGTCACTACTTC
CGCGTTGATTCTCCGACAATCAACGCGGCACCTCGAATTACCCAGGATCT
CGAATACCCCGGATTCGAGGTAGAGGATCAAGTATGGAACCGGCTGCTGG
AATTAAG
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Coding sequence (CDS) from alignment at L-digitata_M_contig1008:14100..19406-

>mRNA_L-digitata_M_contig1008.6.1 ID=mRNA_L-digitata_M_contig1008.6.1|Name=mRNA_L-digitata_M_contig1008.6.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=333bp|location=Sequence derived from alignment at L-digitata_M_contig1008:14100..19406- (Laminaria digitata LdigPH10_18mv male)
ATGGAGAGAAATTTCAAGAAAGAGATCCAAGAAGCGGCTTCGAACCCCAT
CGACATGGCCGAGATGATGGCACAATTAGTGCAGCTGTACAAGCTTCGCG
ATCACGGCGCCATGAGCACCGGGGGCTCTTCGGGCTATCGAGGGAGTGCC
ACGGGCATGACCAACAGGACCAGCAACCGAAAGTCGCAGTCGAGCCGCCG
GACGCAAAACATGCGCGAAAGTGCCATGGGAAGGAGCAAGCGGAAGAGGG
GCAGCCGGGTTAGCAGCGGGGGCGGTAGCATGCGCGCGTCTCACGGGCTC
GGACCTTTGCAAGAGGTAATGGCCAGGCAATGA
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