prot_L-digitata_M_contig10041.1.1 (polypeptide) Laminaria digitata LdigPH10_18mv male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-digitata_M_contig10041.1.1
Unique Nameprot_L-digitata_M_contig10041.1.1
Typepolypeptide
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Sequence length577
Homology
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BLAST of mRNA_L-digitata_M_contig10041.1.1 vs. uniprot
Match: A0A6H5KC01_9PHAE (SUZ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC01_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 3.410e-40
Identity = 124/194 (63.92%), Postives = 133/194 (68.56%), Query Frame = 0 
Query:   72 RGSRRPPVNAGEWKGQRGMQRNRVAEKSDPDFVRNYDNYRPSFAPYRQLADPGGGXXXXXXXXXXXXX----QQPQPSPRLLHQHXXXXXXHPMMAAPGHH--GQA-HAMMAMPAAMQG-QLRGQMPGQPGVLVVQQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPATYGAPVPGHAIYAP-GFIDPAQA 256
            RGSRRP VNAGEWKGQRGMQRNR+AEKSDPDFVRNYD+YRPSFAPYRQLADPGGG      XXXXXXX    QQPQPSPRLL QH      H MM+A   H  GQA HAMMA+PA MQG QLRGQMPGQ     +                      XXXXXXXXX   P+ YGA VPGHA+YA  G++DPAQA
Sbjct:  574 RGSRRPAVNAGEWKGQRGMQRNRMAEKSDPDFVRNYDHYRPSFAPYRQLADPGGGGGGGRGXXXXXXXXXXXQQPQPSPRLLQQHP-----HAMMSAAVQHAHGQAAHAMMAIPAGMQGHQLRGQMPGQMEAQAMXX--------------------XXXXXXXXXGGAPSVYGAAVPGHAMYAAQGYVDPAQA 742
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BLAST of mRNA_L-digitata_M_contig10041.1.1 vs. uniprot
Match: D8LM72_ECTSI (R3H domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM72_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 1.130e-27
Identity = 128/198 (64.65%), Postives = 132/198 (66.67%), Query Frame = 0 
Query:    1 GFGSGRGRPIAGGGKGGNXXXXXXXXXXXXXXXXXXGLQQ-GPDG-DRGDLXXXXXXXXXXXXXXXXXXXXGGRGS-RRPPVNAGEWKGQRGMQRNRVAEKSDPDFVRNYDNYRPSFAPYRQLADPGGGXXXXXXXXXXXXXQQPQPSPRLLHQHXXXXXXHPMMAAPGH-HGQA-HAMMAMPAAMQG-QLRGQMPGQ 192
            GFGSGRG+P+ GGG             XXXX     GLQQ G DG DRGD    XXXXXX      XXXXX      RRP VNAGEWKGQRGMQRNR+AEKSDPDFVRNYDNYRPSFAPYRQLADPGG     XXXXXXXXX             XXXXXX  M AA  H HGQA HAMMA+PA MQG QLRGQMPGQ
Sbjct:  629 GFGSGRGKPVPGGGX------------XXXXGGRAGGLQQQGSDGPDRGDYGRGXXXXXXGPGGRMXXXXXXXXXXXRRPAVNAGEWKGQRGMQRNRMAEKSDPDFVRNYDNYRPSFAPYRQLADPGGRGGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMMSAAVQHAHGQAAHAMMAIPAGMQGHQLRGQMPGQ 814
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10041.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KC01_9PHAE3.410e-4063.92SUZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LM72_ECTSI1.130e-2764.65R3H domain-containing protein n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 320..347
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 359..406
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 475..576
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 144..161
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 299..327
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..190
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 309..327
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 475..519
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 90..105
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 359..410

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig10041contigL-digitata_M_contig10041:136..7280 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig10041.1.1mRNA_L-digitata_M_contig10041.1.1Laminaria digitata LdigPH10_18mv malemRNAL-digitata_M_contig10041 136..7280 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-digitata_M_contig10041.1.1 ID=prot_L-digitata_M_contig10041.1.1|Name=mRNA_L-digitata_M_contig10041.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=577bp
GFGSGRGRPIAGGGKGGNGGGGGGGRGGGERGGRVGGLQQGPDGDRGDLG
GGGGGGRGRGGERAGGRTGGGRGSRRPPVNAGEWKGQRGMQRNRVAEKSD
PDFVRNYDNYRPSFAPYRQLADPGGGGGHGGHGGHGGHGQQPQPSPRLLH
QHQQQQQQHPMMAAPGHHGQAHAMMAMPAAMQGQLRGQMPGQPGVLVVQQ
PQQQQQQPWQQQQQMEAQAMAAAAAAAAAGGGPATYGAPVPGHAIYAPGF
IDPAQAQAQAQAQAQAQAQAAAAAAAAAAAAAAAAAAGATGTTGSAGIGV
PAPGAAAPTMRSQTHQPRQQRQQQQQQQQQQQQLQQQQLQQQQQQQRQMA
YLHPQQQQQQAVTAGVLPAQPGQQQPGQQQQPQQQAQAQAQQQQTQHQQP
PQAGLLQTPHMQAGVAVAGGYMTAQEYYGAHQQAIFYQDPNMPGMAMGYG
VQHAQIPQQQQQAYIVPVQQQQQQQQQQPQQQQQQHQQHQHHPYQHQVFP
VGAMQQQPMPPQQQQQQQHRPQHQRHHGNNHQHHQSGGGGGGGGGRHSGA
GGAGGGGGGGRTVPNRGYQSDFPPLG*
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