mRNA_L-digitata_M_contig102387.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig102387.1.1
Unique NamemRNA_L-digitata_M_contig102387.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig102387.1.1 vs. uniprot
Match: D7FNJ6_ECTSI (Lon protease homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNJ6_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 3.760e-35
Identity = 69/82 (84.15%), Postives = 73/82 (89.02%), Query Frame = 1 
Query:    4 QIAYSVSRECLGRFRPDCAMFFERAAEVHMHVPEGATPKDGPSAGVTMVTALLSLAMRTPVREDLAMTGELSLTGKVCWGGG 249
            QIAYSV+RECLG+ RP  A+FFE+AAEVHMHVPEGATPKDGPSAGVTMVTALLSLA  T VREDLAMTGELSLTGKV   GG
Sbjct:  927 QIAYSVARECLGKLRPASALFFEKAAEVHMHVPEGATPKDGPSAGVTMVTALLSLATGTSVREDLAMTGELSLTGKVLPVGG 1008
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BLAST of mRNA_L-digitata_M_contig102387.1.1 vs. uniprot
Match: A0A7R9VGS6_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VGS6_9STRA)

HSP 1 Score: 104 bits (259), Expect = 2.160e-25
Identity = 54/82 (65.85%), Postives = 65/82 (79.27%), Query Frame = 1 
Query:    4 QIAYSVSRECLGRFRPDCAMFFERAAEVHMHVPEGATPKDGPSAGVTMVTALLSLAMRTPVREDLAMTGELSLTGKVCWGGG 249
            QIAY+V+R  L + +PD   F E   ++HMHVPEGATPKDGPSAG+TMVTA+LSLA+  PV+ DLAMTGE+SLTGKV   GG
Sbjct:  154 QIAYTVARARLAQVQPDNIYFDEY--DIHMHVPEGATPKDGPSAGITMVTAMLSLALDKPVKNDLAMTGEISLTGKVLPVGG 233
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BLAST of mRNA_L-digitata_M_contig102387.1.1 vs. uniprot
Match: W4F9P1_9STRA (Lon proteolytic domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4F9P1_9STRA)

HSP 1 Score: 100 bits (248), Expect = 1.080e-24
Identity = 55/82 (67.07%), Postives = 65/82 (79.27%), Query Frame = 1 
Query:    4 QIAYSVSRECLGRFRPDCAMFFERAAEVHMHVPEGATPKDGPSAGVTMVTALLSLAMRTPVREDLAMTGELSLTGKVCWGGG 249
            +IA++ +R  L +  PD A FFE  A++H+HVPEGATPKDGPSAG TMVTALLSLA+  PV+ DLAMTGELSLTGKV   GG
Sbjct:   54 KIAHTFARHKLEQLEPDNA-FFE--ADLHLHVPEGATPKDGPSAGCTMVTALLSLALDKPVKSDLAMTGELSLTGKVLPVGG 132
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BLAST of mRNA_L-digitata_M_contig102387.1.1 vs. uniprot
Match: B8C600_THAPS (Lon protease homolog (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C600_THAPS)

HSP 1 Score: 103 bits (258), Expect = 4.410e-24
Identity = 52/82 (63.41%), Postives = 64/82 (78.05%), Query Frame = 1 
Query:    4 QIAYSVSRECLGRFRPDCAMFFERAAEVHMHVPEGATPKDGPSAGVTMVTALLSLAMRTPVREDLAMTGELSLTGKVCWGGG 249
            QIAY+V+R  +    PD + F +   ++HMHVPEGATPKDGPSAGVTMVTA+LSLA+  P++ DLAMTGE+SLTGKV   GG
Sbjct:  701 QIAYTVARARMAEIAPDNSFFDD--TDIHMHVPEGATPKDGPSAGVTMVTAMLSLALDRPIKSDLAMTGEISLTGKVLAVGG 780
[Close]
BLAST of mRNA_L-digitata_M_contig102387.1.1 vs. uniprot
Match: A0A7S2RJP1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RJP1_9STRA)

HSP 1 Score: 100 bits (250), Expect = 4.680e-24
Identity = 50/77 (64.94%), Postives = 61/77 (79.22%), Query Frame = 1 
Query:    4 QIAYSVSRECLGRFRPDCAMFFERAAEVHMHVPEGATPKDGPSAGVTMVTALLSLAMRTPVREDLAMTGELSLTGKV 234
            QIAY+V+R  L   +P  + F +   ++HMHVPEGATPKDGPSAG+TM TA+LSLAM  P+R DLAMTGE+SLTGKV
Sbjct:  160 QIAYTVARAKLSCTKPSSSYFDD--FDIHMHVPEGATPKDGPSAGITMTTAMLSLAMDKPIRNDLAMTGEISLTGKV 234
[Close]
BLAST of mRNA_L-digitata_M_contig102387.1.1 vs. uniprot
Match: A0A7S4J9P4_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4J9P4_9EUKA)

HSP 1 Score: 97.8 bits (242), Expect = 6.720e-24
Identity = 53/76 (69.74%), Postives = 60/76 (78.95%), Query Frame = 1 
Query:    7 IAYSVSRECLGRFRPDCAMFFERAAEVHMHVPEGATPKDGPSAGVTMVTALLSLAMRTPVREDLAMTGELSLTGKV 234
            IA++ +R  L   +PD   + ERA  +H+HVPEGATPKDGPSAGVTMVTALLSLA  TP R DLAMTGELSLTGKV
Sbjct:   32 IAHTYARTYLNALQPDNT-YLERAP-LHLHVPEGATPKDGPSAGVTMVTALLSLATATPPRADLAMTGELSLTGKV 105
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BLAST of mRNA_L-digitata_M_contig102387.1.1 vs. uniprot
Match: A0A7D9LSU3_PARCT (Lon protease homolog, mitochondrial-like n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9LSU3_PARCT)

HSP 1 Score: 97.1 bits (240), Expect = 1.680e-23
Identity = 50/82 (60.98%), Postives = 67/82 (81.71%), Query Frame = 1 
Query:    4 QIAYSVSRECLGRFRPDCAMFFERAAEVHMHVPEGATPKDGPSAGVTMVTALLSLAMRTPVREDLAMTGELSLTGKVCWGGG 249
            +I+Y+ S+  L +  PD   FF++A+ +H+HVPEGATPKDGPSAG T++TALLSLA+ TPVR+++AMTGE+SLTGKV   GG
Sbjct:   50 KISYTFSKGFLAKLYPD-NKFFQQAS-MHLHVPEGATPKDGPSAGCTIITALLSLALDTPVRQNIAMTGEVSLTGKVLPVGG 129
[Close]
BLAST of mRNA_L-digitata_M_contig102387.1.1 vs. uniprot
Match: E9GU95_DAPPU (Lon protease homolog, mitochondrial n=8 Tax=Daphnia TaxID=6668 RepID=E9GU95_DAPPU)

HSP 1 Score: 102 bits (253), Expect = 2.090e-23
Identity = 52/83 (62.65%), Postives = 66/83 (79.52%), Query Frame = 1 
Query:    1 LQIAYSVSRECLGRFRPDCAMFFERAAEVHMHVPEGATPKDGPSAGVTMVTALLSLAMRTPVREDLAMTGELSLTGKVCWGGG 249
            ++IAY+V++    + RPD + F E  A +H+HVPEGATPKDGPSAG T+VTALLSLAM  PVR+++AMTGE+SLTGKV   GG
Sbjct:  721 VRIAYTVAKMFSAKIRPDDSFFSE--AHIHVHVPEGATPKDGPSAGCTIVTALLSLAMNEPVRQNIAMTGEVSLTGKVLPVGG 801
[Close]
BLAST of mRNA_L-digitata_M_contig102387.1.1 vs. uniprot
Match: A0A7S3PZD5_9STRA (Lon protease homolog n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PZD5_9STRA)

HSP 1 Score: 102 bits (253), Expect = 2.100e-23
Identity = 51/77 (66.23%), Postives = 60/77 (77.92%), Query Frame = 1 
Query:    4 QIAYSVSRECLGRFRPDCAMFFERAAEVHMHVPEGATPKDGPSAGVTMVTALLSLAMRTPVREDLAMTGELSLTGKV 234
            +IAY+VSR  L    P  + F E   ++HMHVPEGATPKDGPSAGVTM TA+LSLA+  P+R DLAMTGE+SLTGKV
Sbjct:  825 EIAYTVSRAQLADIDPSSSFFDEN--DIHMHVPEGATPKDGPSAGVTMTTAMLSLALGKPIRNDLAMTGEISLTGKV 899
[Close]
BLAST of mRNA_L-digitata_M_contig102387.1.1 vs. uniprot
Match: A0A7S1CBW2_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CBW2_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 2.390e-23
Identity = 55/77 (71.43%), Postives = 61/77 (79.22%), Query Frame = 1 
Query:    4 QIAYSVSRECLGRFRPDCAMFFERAAEVHMHVPEGATPKDGPSAGVTMVTALLSLAMRTPVREDLAMTGELSLTGKV 234
            QIA S +R  L    P+   FFERAA +H+HVPEGATPKDGPSAGVTMVTALLSLA   PV+ DLAMTGELSLTG+V
Sbjct:  194 QIALSFARHKLRALEPEND-FFERAA-LHLHVPEGATPKDGPSAGVTMVTALLSLATNKPVKPDLAMTGELSLTGRV 268
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig102387.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNJ6_ECTSI3.760e-3584.15Lon protease homolog n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A7R9VGS6_9STRA2.160e-2565.85Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
W4F9P1_9STRA1.080e-2467.07Lon proteolytic domain-containing protein n=2 Tax=... [more]
B8C600_THAPS4.410e-2463.41Lon protease homolog (Fragment) n=1 Tax=Thalassios... [more]
A0A7S2RJP1_9STRA4.680e-2464.94Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7S4J9P4_9EUKA6.720e-2469.74Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
A0A7D9LSU3_PARCT1.680e-2360.98Lon protease homolog, mitochondrial-like n=1 Tax=P... [more]
E9GU95_DAPPU2.090e-2362.65Lon protease homolog, mitochondrial n=8 Tax=Daphni... [more]
A0A7S3PZD5_9STRA2.100e-2366.23Lon protease homolog n=1 Tax=Chaetoceros debilis T... [more]
A0A7S1CBW2_9STRA2.390e-2371.43Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig102387contigL-digitata_M_contig102387:613..861 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FNJ6
Preferred namePIM1
PFAMsAAA,LON_substr_bdg,Lon_C
Model size249
Max annot lvl2759|Eukaryota
KEGG koko:K08675
Hectar predicted targeting categoryother localisation
GOsGO:0000002,GO:0000166,GO:0001018,GO:0001067,GO:0001666,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003723,GO:0003727,GO:0003824,GO:0004175,GO:0004176,GO:0004252,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005759,GO:0005777,GO:0005829,GO:0006139,GO:0006259,GO:0006508,GO:0006515,GO:0006725,GO:0006807,GO:0006950,GO:0006979,GO:0006996,GO:0007005,GO:0007568,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0009056,GO:0009057,GO:0009266,GO:0009295,GO:0009314,GO:0009408,GO:0009507,GO:0009536,GO:0009628,GO:0009719,GO:0009725,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010044,GO:0010165,GO:0010212,GO:0010604,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0017171,GO:0019222,GO:0019538,GO:0019899,GO:0019941,GO:0022607,GO:0030163,GO:0030554,GO:0031974,GO:0031981,GO:0032042,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0033554,GO:0034599,GO:0034622,GO:0034641,GO:0035639,GO:0035694,GO:0036094,GO:0036293,GO:0042176,GO:0042221,GO:0042579,GO:0042623,GO:0042645,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043531,GO:0043565,GO:0043632,GO:0043933,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045732,GO:0046483,GO:0048518,GO:0050789,GO:0050896,GO:0051131,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051259,GO:0051260,GO:0051603,GO:0051716,GO:0051880,GO:0060255,GO:0065003,GO:0065007,GO:0070011,GO:0070013,GO:0070182,GO:0070407,GO:0070482,GO:0070887,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0140096,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901565,GO:1901575
Exons1
Evalue6.17e-36
EggNOG OGsCOG0466@1|root,KOG2004@2759|Eukaryota
EC3.4.21.53
DescriptionATP-dependent serine protease that mediates the selective degradation of misfolded, unassembled or oxidatively damaged polypeptides as well as certain short-lived regulatory proteins in the mitochondrial matrix. May also have a chaperone function in the assembly of inner membrane protein complexes. Participates in the regulation of mitochondrial gene expression and in the maintenance of the integrity of the mitochondrial genome. Binds to mitochondrial
Cds size249
COG categoryO
BRITEko00000,ko01000,ko01002,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406628.7866871-CDS-L-digitata_M_contig102387:612..8611682406628.7866871-CDS-L-digitata_M_contig102387:612..861Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig102387 613..861 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig102387.1.1prot_L-digitata_M_contig102387.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig102387 613..861 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig102387.1.1

>prot_L-digitata_M_contig102387.1.1 ID=prot_L-digitata_M_contig102387.1.1|Name=mRNA_L-digitata_M_contig102387.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=83bp
LQIAYSVSRECLGRFRPDCAMFFERAAEVHMHVPEGATPKDGPSAGVTMV
TALLSLAMRTPVREDLAMTGELSLTGKVCWGGG
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mRNA from alignment at L-digitata_M_contig102387:613..861+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig102387.1.1 ID=mRNA_L-digitata_M_contig102387.1.1|Name=mRNA_L-digitata_M_contig102387.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=249bp|location=Sequence derived from alignment at L-digitata_M_contig102387:613..861+ (Laminaria digitata LdigPH10_18mv male)
CTGCAGATCGCGTACTCCGTGTCGCGGGAGTGCCTGGGCAGGTTCCGGCC
TGACTGCGCGATGTTCTTCGAGCGAGCGGCGGAGGTGCACATGCACGTGC
CGGAGGGCGCCACTCCCAAAGATGGTCCCTCCGCGGGGGTGACGATGGTG
ACCGCGTTGCTGTCGCTTGCCATGCGAACGCCTGTCAGGGAGGACTTGGC
CATGACGGGGGAGTTGTCGCTGACCGGGAAGGTATGCTGGGGCGGGGGG
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Coding sequence (CDS) from alignment at L-digitata_M_contig102387:613..861+

>mRNA_L-digitata_M_contig102387.1.1 ID=mRNA_L-digitata_M_contig102387.1.1|Name=mRNA_L-digitata_M_contig102387.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=249bp|location=Sequence derived from alignment at L-digitata_M_contig102387:613..861+ (Laminaria digitata LdigPH10_18mv male)
CTGCAGATCGCGTACTCCGTGTCGCGGGAGTGCCTGGGCAGGTTCCGGCC
TGACTGCGCGATGTTCTTCGAGCGAGCGGCGGAGGTGCACATGCACGTGC
CGGAGGGCGCCACTCCCAAAGATGGTCCCTCCGCGGGGGTGACGATGGTG
ACCGCGTTGCTGTCGCTTGCCATGCGAACGCCTGTCAGGGAGGACTTGGC
CATGACGGGGGAGTTGTCGCTGACCGGGAAGGTATGCTGGGGCGGGGGG
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