prot_L-digitata_M_contig101331.1.1 (polypeptide) Laminaria digitata LdigPH10_18mv male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-digitata_M_contig101331.1.1
Unique Nameprot_L-digitata_M_contig101331.1.1
Typepolypeptide
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Sequence length119
Homology
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BLAST of mRNA_L-digitata_M_contig101331.1.1 vs. uniprot
Match: A0A4Y1ZP29_ARAVE (gag_pre-integrs domain-containing protein (Fragment) n=2 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y1ZP29_ARAVE)

HSP 1 Score: 51.6 bits (122), Expect = 3.770e-5
Identity = 31/104 (29.81%), Postives = 51/104 (49.04%), Query Frame = 0 
Query:   17 WCFDSGSSGNVSNSCEKMTDFRPCNKF-VRVA-NGTHLPIEGDGNLVVDFQSGQNSVHLKLIDVNYVPRLSYHLFSGPACVKQGHTYLGDHRGITVNLKSGESL 118
            W FD+ ++ + S   + M ++RP     V VA  G   P+EG G + ++F        + L++V Y P+L  +L SG    K GH ++ +   + V  K G  L
Sbjct:  280 WIFDTAATSHFSCDKDSMLNYRPVKGAEVSVAIGGVTCPVEGTGEVELEFYKNGECETITLLNVLYSPKLKQNLISGSKIDKAGHNFVCNKNILNVYHKDGHKL 383
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BLAST of mRNA_L-digitata_M_contig101331.1.1 vs. uniprot
Match: A0A4Y2NTP2_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=9 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2NTP2_ARAVE)

HSP 1 Score: 51.6 bits (122), Expect = 4.020e-5
Identity = 31/104 (29.81%), Postives = 51/104 (49.04%), Query Frame = 0 
Query:   17 WCFDSGSSGNVSNSCEKMTDFRPCNKF-VRVA-NGTHLPIEGDGNLVVDFQSGQNSVHLKLIDVNYVPRLSYHLFSGPACVKQGHTYLGDHRGITVNLKSGESL 118
            W FD+ ++ + S   + M ++RP     V VA  G   P+EG G + ++F        + L++V Y P+L  +L SG    K GH ++ +   + V  K G  L
Sbjct:  280 WIFDTAATSHFSCDKDSMLNYRPVKGAEVSVAIGGVTCPVEGTGEVELEFYKNGECETITLLNVLYSPKLKQNLISGSKIDKAGHNFVCNKNILNVYHKDGHKL 383
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101331.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A4Y1ZP29_ARAVE3.770e-529.81gag_pre-integrs domain-containing protein (Fragmen... [more]
A0A4Y2NTP2_ARAVE4.020e-529.81Retrovirus-related Pol polyprotein from transposon... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101331contigL-digitata_M_contig101331:293..649 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101331.1.1mRNA_L-digitata_M_contig101331.1.1Laminaria digitata LdigPH10_18mv malemRNAL-digitata_M_contig101331 293..649 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-digitata_M_contig101331.1.1 ID=prot_L-digitata_M_contig101331.1.1|Name=mRNA_L-digitata_M_contig101331.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=119bp
LALALQGGEERKSLEAWCFDSGSSGNVSNSCEKMTDFRPCNKFVRVANGT
HLPIEGDGNLVVDFQSGQNSVHLKLIDVNYVPRLSYHLFSGPACVKQGHT
YLGDHRGITVNLKSGESLL
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