mRNA_L-digitata_M_contig101331.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101331.1.1
Unique NamemRNA_L-digitata_M_contig101331.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig101331.1.1 vs. uniprot
Match: A0A4Y1ZP29_ARAVE (gag_pre-integrs domain-containing protein (Fragment) n=2 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y1ZP29_ARAVE)

HSP 1 Score: 51.6 bits (122), Expect = 3.770e-5
Identity = 31/104 (29.81%), Postives = 51/104 (49.04%), Query Frame = 1 
Query:   49 WCFDSGSSGNVSNSCEKMTDFRPCNKF-VRVA-NGTHLPIEGDGNLVVDFQSGQNSVHLKLIDVNYVPRLSYHLFSGPACVKQGHTYLGDHRGITVNLKSGESL 354
            W FD+ ++ + S   + M ++RP     V VA  G   P+EG G + ++F        + L++V Y P+L  +L SG    K GH ++ +   + V  K G  L
Sbjct:  280 WIFDTAATSHFSCDKDSMLNYRPVKGAEVSVAIGGVTCPVEGTGEVELEFYKNGECETITLLNVLYSPKLKQNLISGSKIDKAGHNFVCNKNILNVYHKDGHKL 383
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BLAST of mRNA_L-digitata_M_contig101331.1.1 vs. uniprot
Match: A0A4Y2NTP2_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=9 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2NTP2_ARAVE)

HSP 1 Score: 51.6 bits (122), Expect = 4.020e-5
Identity = 31/104 (29.81%), Postives = 51/104 (49.04%), Query Frame = 1 
Query:   49 WCFDSGSSGNVSNSCEKMTDFRPCNKF-VRVA-NGTHLPIEGDGNLVVDFQSGQNSVHLKLIDVNYVPRLSYHLFSGPACVKQGHTYLGDHRGITVNLKSGESL 354
            W FD+ ++ + S   + M ++RP     V VA  G   P+EG G + ++F        + L++V Y P+L  +L SG    K GH ++ +   + V  K G  L
Sbjct:  280 WIFDTAATSHFSCDKDSMLNYRPVKGAEVSVAIGGVTCPVEGTGEVELEFYKNGECETITLLNVLYSPKLKQNLISGSKIDKAGHNFVCNKNILNVYHKDGHKL 383
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101331.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A4Y1ZP29_ARAVE3.770e-529.81gag_pre-integrs domain-containing protein (Fragmen... [more]
A0A4Y2NTP2_ARAVE4.020e-529.81Retrovirus-related Pol polyprotein from transposon... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101331contigL-digitata_M_contig101331:293..649 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog3750.XP_008353440.1
PFAMsAminotran_1_2
Model size357
Max annot lvl35493|Streptophyta
KEGG rclassRC00004,RC02725,RC02849
KEGG koko:K00654
KEGG ReactionR01281
KEGG Pathwayko00600,ko01100,ko04071,ko04138,map00600,map01100,map04071,map04138
KEGG ModuleM00094,M00099
Hectar predicted targeting categoryother localisation
GOsGO:0002178,GO:0003674,GO:0003824,GO:0004758,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006066,GO:0006629,GO:0006643,GO:0006644,GO:0006665,GO:0006667,GO:0006670,GO:0006672,GO:0006684,GO:0006686,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010506,GO:0010508,GO:0012505,GO:0016020,GO:0016239,GO:0016241,GO:0016408,GO:0016409,GO:0016454,GO:0016740,GO:0016746,GO:0016747,GO:0017059,GO:0019222,GO:0019637,GO:0019751,GO:0030148,GO:0031211,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031984,GO:0032991,GO:0034311,GO:0034312,GO:0034641,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046165,GO:0046173,GO:0046467,GO:0046511,GO:0046512,GO:0046513,GO:0046519,GO:0046520,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0065007,GO:0071704,GO:0090407,GO:0097164,GO:0098796,GO:0098827,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617,GO:1902494,GO:1904502,GO:1904504,GO:1905961,GO:1990234
Exons1
Evalue2.21e-07
EggNOG OGsCOG0156@1|root,COG2801@1|root,KOG0017@2759|Eukaryota,KOG1357@2759|Eukaryota,37P3R@33090|Viridiplantae,3G9PV@35493|Streptophyta,4JERC@91835|fabids
EC2.3.1.50
DescriptionLong chain base biosynthesis protein
Cds size357
COG categoryO
BRITEko00000,ko00001,ko00002,ko01000,ko01007
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406617.7564511-CDS-L-digitata_M_contig101331:292..6491682406617.7564511-CDS-L-digitata_M_contig101331:292..649Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101331 293..649 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101331.1.1prot_L-digitata_M_contig101331.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101331 293..649 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101331.1.1

>prot_L-digitata_M_contig101331.1.1 ID=prot_L-digitata_M_contig101331.1.1|Name=mRNA_L-digitata_M_contig101331.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=119bp
LALALQGGEERKSLEAWCFDSGSSGNVSNSCEKMTDFRPCNKFVRVANGT
HLPIEGDGNLVVDFQSGQNSVHLKLIDVNYVPRLSYHLFSGPACVKQGHT
YLGDHRGITVNLKSGESLL
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mRNA from alignment at L-digitata_M_contig101331:293..649-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101331.1.1 ID=mRNA_L-digitata_M_contig101331.1.1|Name=mRNA_L-digitata_M_contig101331.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=357bp|location=Sequence derived from alignment at L-digitata_M_contig101331:293..649- (Laminaria digitata LdigPH10_18mv male)
TTGGCGTTGGCATTGCAGGGTGGGGAAGAGCGGAAGTCGTTGGAGGCTTG
GTGTTTCGACTCCGGGTCGTCCGGCAACGTGTCAAATAGTTGCGAGAAAA
TGACTGATTTCCGCCCGTGCAACAAGTTCGTGCGTGTCGCAAATGGCACG
CATCTTCCGATTGAAGGTGACGGCAATCTTGTTGTTGACTTTCAATCTGG
CCAGAATTCGGTACACCTGAAGCTTATCGATGTTAATTACGTACCGAGAC
TGAGCTACCACCTGTTCTCAGGGCCCGCTTGTGTCAAACAAGGCCACACT
TACCTTGGTGATCACAGAGGGATCACTGTCAACCTCAAGTCTGGCGAGTC
GCTGCTG
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Coding sequence (CDS) from alignment at L-digitata_M_contig101331:293..649-

>mRNA_L-digitata_M_contig101331.1.1 ID=mRNA_L-digitata_M_contig101331.1.1|Name=mRNA_L-digitata_M_contig101331.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=357bp|location=Sequence derived from alignment at L-digitata_M_contig101331:293..649- (Laminaria digitata LdigPH10_18mv male)
TTGGCGTTGGCATTGCAGGGTGGGGAAGAGCGGAAGTCGTTGGAGGCTTG
GTGTTTCGACTCCGGGTCGTCCGGCAACGTGTCAAATAGTTGCGAGAAAA
TGACTGATTTCCGCCCGTGCAACAAGTTCGTGCGTGTCGCAAATGGCACG
CATCTTCCGATTGAAGGTGACGGCAATCTTGTTGTTGACTTTCAATCTGG
CCAGAATTCGGTACACCTGAAGCTTATCGATGTTAATTACGTACCGAGAC
TGAGCTACCACCTGTTCTCAGGGCCCGCTTGTGTCAAACAAGGCCACACT
TACCTTGGTGATCACAGAGGGATCACTGTCAACCTCAAGTCTGGCGAGTC
GCTGCTG
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