prot_L-digitata_M_contig101120.1.1 (polypeptide) Laminaria digitata LdigPH10_18mv male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-digitata_M_contig101120.1.1
Unique Nameprot_L-digitata_M_contig101120.1.1
Typepolypeptide
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Sequence length124
Homology
BLAST of mRNA_L-digitata_M_contig101120.1.1 vs. uniprot
Match: A0A6H5JPB8_9PHAE (CCHC-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPB8_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 4.890e-13
Identity = 39/123 (31.71%), Postives = 68/123 (55.28%), Query Frame = 0
Query:    2 RHTLAWSFLSTALKSQSDKSILHRCTSPREAWDALLEWYGPETTEAKSDLSRRLNSFKIATGSNPQAEMGRIEDLAAEMRTAGMILNDNMLCTIFLDALPSEYDIEVRNLASRDSVSREESIK 124
            R   A+ FLS+AL  + DK++  RC +P++A D L + + PE+  A  +L  +  +F +    NP   +  +E LA+ +   G+ +  + + ++FL ALP+EYD     L S  ++ R E I+
Sbjct:  203 RSLQAFHFLSSALVREPDKAVFGRCVTPKQALDELDKVHNPESQVATQELLSKFQNFAMPADKNPTESLIAMEQLASRLNERGVRVEASYVLSLFLSALPAEYDHAKLTLQSAPTLDRGEVIR 325          
BLAST of mRNA_L-digitata_M_contig101120.1.1 vs. uniprot
Match: A0A6H5JJW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJW6_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 8.060e-13
Identity = 34/104 (32.69%), Postives = 60/104 (57.69%), Query Frame = 0
Query:    2 RHTLAWSFLSTALKSQSDKSILHRCTSPREAWDALLEWYGPETTEAKSDLSRRLNSFKIATGSNPQAEMGRIEDLAAEMRTAGMILNDNMLCTIFLDALPSEYD 105
            R   A+ FLS+AL  + DK++  RC +P++A D L + + PE+  A  +L  +  +F +    NP   +  +E LA+ +   G+ +  + + ++FL ALP+EYD
Sbjct:   81 RSLQAFHFLSSALVREPDKAVFGRCVTPKQALDELDKVHNPESQVATQELLSKFQNFAMPADKNPTESLIAMEQLASRLNERGVRVEASYVLSLFLSALPAEYD 184          
BLAST of mRNA_L-digitata_M_contig101120.1.1 vs. uniprot
Match: A0A6H5JXJ0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXJ0_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 6.850e-6
Identity = 27/50 (54.00%), Postives = 33/50 (66.00%), Query Frame = 0
Query:    5 LAWSFLSTALKSQSDKSILHRCTSPREAWDALLEWYGPETTEAKSDLSRR 54
            LAW+FLS AL +++DKSIL RCT+PREA   L   Y PET   +    RR
Sbjct:  144 LAWNFLSAALTTETDKSILRRCTNPREALRQLDAAYLPETXAGRHSRHRR 193          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101120.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JPB8_9PHAE4.890e-1331.71CCHC-type domain-containing protein n=7 Tax=Ectoca... [more]
A0A6H5JJW6_9PHAE8.060e-1332.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXJ0_9PHAE6.850e-654.00CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 6..118
e-value: 1.5E-16
score: 60.4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101120contigL-digitata_M_contig101120:2..373 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101120.1.1mRNA_L-digitata_M_contig101120.1.1Laminaria digitata LdigPH10_18mv malemRNAL-digitata_M_contig101120 2..373 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-digitata_M_contig101120.1.1 ID=prot_L-digitata_M_contig101120.1.1|Name=mRNA_L-digitata_M_contig101120.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=124bp
QRHTLAWSFLSTALKSQSDKSILHRCTSPREAWDALLEWYGPETTEAKSD
LSRRLNSFKIATGSNPQAEMGRIEDLAAEMRTAGMILNDNMLCTIFLDAL
PSEYDIEVRNLASRDSVSREESIK
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