mRNA_L-digitata_M_contig101120.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101120.1.1
Unique NamemRNA_L-digitata_M_contig101120.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig101120.1.1 vs. uniprot
Match: A0A6H5JPB8_9PHAE (CCHC-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPB8_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 4.890e-13
Identity = 39/123 (31.71%), Postives = 68/123 (55.28%), Query Frame = 1 
Query:    4 RHTLAWSFLSTALKSQSDKSILHRCTSPREAWDALLEWYGPETTEAKSDLSRRLNSFKIATGSNPQAEMGRIEDLAAEMRTAGMILNDNMLCTIFLDALPSEYDIEVRNLASRDSVSREESIK 372
            R   A+ FLS+AL  + DK++  RC +P++A D L + + PE+  A  +L  +  +F +    NP   +  +E LA+ +   G+ +  + + ++FL ALP+EYD     L S  ++ R E I+
Sbjct:  203 RSLQAFHFLSSALVREPDKAVFGRCVTPKQALDELDKVHNPESQVATQELLSKFQNFAMPADKNPTESLIAMEQLASRLNERGVRVEASYVLSLFLSALPAEYDHAKLTLQSAPTLDRGEVIR 325
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BLAST of mRNA_L-digitata_M_contig101120.1.1 vs. uniprot
Match: A0A6H5JJW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJW6_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 8.060e-13
Identity = 34/104 (32.69%), Postives = 60/104 (57.69%), Query Frame = 1 
Query:    4 RHTLAWSFLSTALKSQSDKSILHRCTSPREAWDALLEWYGPETTEAKSDLSRRLNSFKIATGSNPQAEMGRIEDLAAEMRTAGMILNDNMLCTIFLDALPSEYD 315
            R   A+ FLS+AL  + DK++  RC +P++A D L + + PE+  A  +L  +  +F +    NP   +  +E LA+ +   G+ +  + + ++FL ALP+EYD
Sbjct:   81 RSLQAFHFLSSALVREPDKAVFGRCVTPKQALDELDKVHNPESQVATQELLSKFQNFAMPADKNPTESLIAMEQLASRLNERGVRVEASYVLSLFLSALPAEYD 184
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BLAST of mRNA_L-digitata_M_contig101120.1.1 vs. uniprot
Match: A0A6H5JXJ0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXJ0_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 6.850e-6
Identity = 27/50 (54.00%), Postives = 33/50 (66.00%), Query Frame = 1 
Query:   13 LAWSFLSTALKSQSDKSILHRCTSPREAWDALLEWYGPETTEAKSDLSRR 162
            LAW+FLS AL +++DKSIL RCT+PREA   L   Y PET   +    RR
Sbjct:  144 LAWNFLSAALTTETDKSILRRCTNPREALRQLDAAYLPETXAGRHSRHRR 193
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101120.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JPB8_9PHAE4.890e-1331.71CCHC-type domain-containing protein n=7 Tax=Ectoca... [more]
A0A6H5JJW6_9PHAE8.060e-1332.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXJ0_9PHAE6.850e-654.00CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101120contigL-digitata_M_contig101120:2..373 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog126957.SMAR006114-PA
Preferred nameSLC30A9
PFAMsCation_efflux
Model size372
Max annot lvl33208|Metazoa
KEGG koko:K14696
KEGG TC2.A.4.6
Hectar predicted targeting categoryother localisation
GOsGO:0000041,GO:0000981,GO:0003674,GO:0003682,GO:0003700,GO:0003712,GO:0003713,GO:0005102,GO:0005215,GO:0005385,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005856,GO:0006139,GO:0006259,GO:0006281,GO:0006289,GO:0006355,GO:0006357,GO:0006725,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006829,GO:0006873,GO:0006875,GO:0006882,GO:0006950,GO:0006974,GO:0008134,GO:0008150,GO:0008152,GO:0008324,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0012505,GO:0015075,GO:0015318,GO:0016922,GO:0019219,GO:0019222,GO:0019725,GO:0022857,GO:0022890,GO:0030001,GO:0030003,GO:0030374,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031410,GO:0031982,GO:0033554,GO:0034220,GO:0034641,GO:0035257,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0046873,GO:0046915,GO:0046916,GO:0048518,GO:0048522,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051252,GO:0051254,GO:0051427,GO:0051716,GO:0055065,GO:0055069,GO:0055076,GO:0055080,GO:0055082,GO:0055085,GO:0060255,GO:0065007,GO:0065008,GO:0070838,GO:0071577,GO:0071704,GO:0072503,GO:0072507,GO:0072509,GO:0072511,GO:0080090,GO:0090304,GO:0097708,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0140110,GO:1901360,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
Exons1
Evalue8.19e-05
EggNOG OGsCOG0053@1|root,KOG2802@2759|Eukaryota,38GDV@33154|Opisthokonta,3BDGH@33208|Metazoa,3CR6I@33213|Bilateria,41VUA@6656|Arthropoda
DescriptionCation transmembrane transporter activity. It is involved in the biological process described with transmembrane transport
Cds size372
COG categoryP
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406614.5284562-CDS-L-digitata_M_contig101120:1..3731682406614.5284562-CDS-L-digitata_M_contig101120:1..373Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101120 2..373 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101120.1.1prot_L-digitata_M_contig101120.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101120 2..373 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101120.1.1

>prot_L-digitata_M_contig101120.1.1 ID=prot_L-digitata_M_contig101120.1.1|Name=mRNA_L-digitata_M_contig101120.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=124bp
QRHTLAWSFLSTALKSQSDKSILHRCTSPREAWDALLEWYGPETTEAKSD
LSRRLNSFKIATGSNPQAEMGRIEDLAAEMRTAGMILNDNMLCTIFLDAL
PSEYDIEVRNLASRDSVSREESIK
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mRNA from alignment at L-digitata_M_contig101120:2..373-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101120.1.1 ID=mRNA_L-digitata_M_contig101120.1.1|Name=mRNA_L-digitata_M_contig101120.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=372bp|location=Sequence derived from alignment at L-digitata_M_contig101120:2..373- (Laminaria digitata LdigPH10_18mv male)
CAGAGGCATACACTGGCATGGAGCTTCCTGTCGACGGCTCTCAAGAGCCA
GAGCGACAAGAGTATCCTGCATCGGTGTACCTCGCCGAGGGAAGCGTGGG
ACGCTCTCCTTGAGTGGTACGGCCCTGAAACAACGGAGGCCAAGTCTGAC
CTCTCCCGACGCCTTAATAGCTTTAAGATCGCAACGGGCAGCAACCCGCA
AGCGGAGATGGGTAGGATCGAGGATCTTGCCGCGGAGATGCGTACAGCAG
GTATGATACTCAACGACAACATGCTGTGCACCATTTTCCTTGATGCCCTC
CCTAGCGAGTACGATATAGAGGTCAGGAACCTGGCATCTCGCGACAGCGT
CAGTCGCGAAGAGAGCATCAAG
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Coding sequence (CDS) from alignment at L-digitata_M_contig101120:2..373-

>mRNA_L-digitata_M_contig101120.1.1 ID=mRNA_L-digitata_M_contig101120.1.1|Name=mRNA_L-digitata_M_contig101120.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=372bp|location=Sequence derived from alignment at L-digitata_M_contig101120:2..373- (Laminaria digitata LdigPH10_18mv male)
CAGAGGCATACACTGGCATGGAGCTTCCTGTCGACGGCTCTCAAGAGCCA
GAGCGACAAGAGTATCCTGCATCGGTGTACCTCGCCGAGGGAAGCGTGGG
ACGCTCTCCTTGAGTGGTACGGCCCTGAAACAACGGAGGCCAAGTCTGAC
CTCTCCCGACGCCTTAATAGCTTTAAGATCGCAACGGGCAGCAACCCGCA
AGCGGAGATGGGTAGGATCGAGGATCTTGCCGCGGAGATGCGTACAGCAG
GTATGATACTCAACGACAACATGCTGTGCACCATTTTCCTTGATGCCCTC
CCTAGCGAGTACGATATAGAGGTCAGGAACCTGGCATCTCGCGACAGCGT
CAGTCGCGAAGAGAGCATCAAG
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