prot_L-digitata_M_contig101001.2.1 (polypeptide) Laminaria digitata LdigPH10_18mv male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-digitata_M_contig101001.2.1
Unique Name	prot_L-digitata_M_contig101001.2.1
Type	polypeptide
Organism	Laminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Sequence length	138

Homology

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BLAST of mRNA_L-digitata_M_contig101001.2.1 vs. uniprot
Match: A0A2E6X2T9_9RHOB (Hydrogenase n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2E6X2T9_9RHOB)

HSP 1 Score: 292 bits (747), Expect = 1.350e-97
Identity = 136/137 (99.27%), Postives = 137/137 (100.00%), Query Frame = 0

Query:    1 TLDEFQRPKTFFSSFTQTGCTRNMHFAYKVSTTAFGQRKGCLFYDLGCRGPMTHSPCNRILWNRQSSKTRAGMPCLGCTEPEFPFFDLAPGTVFKTQTVMGVPKDMPTGVDKKGYMKLTAAAKGASPAWAEEDIFVV 137
            TLDEFQRPKTFFSSFTQTGCTRNMHFAYKVSTTAFGQRKGCLFYDLGCRGPMTHSPCNRILWNRQSSKTRAGMPCLGCTEPEFPFFDLAPGTVFKTQTVMGVPKDMPTGV+KKGYMKLTAAAKGASPAWAEEDIFVV
Sbjct:  185 TLDEFQRPKTFFSSFTQTGCTRNMHFAYKVSTTAFGQRKGCLFYDLGCRGPMTHSPCNRILWNRQSSKTRAGMPCLGCTEPEFPFFDLAPGTVFKTQTVMGVPKDMPTGVNKKGYMKLTAAAKGASPAWAEEDIFVV 321

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BLAST of mRNA_L-digitata_M_contig101001.2.1 vs. uniprot
Match: A0A0T5NWF6_9RHOB (Hydrogenase n=28 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A0T5NWF6_9RHOB)

HSP 1 Score: 284 bits (726), Expect = 2.020e-94
Identity = 131/137 (95.62%), Postives = 134/137 (97.81%), Query Frame = 0

Query:    1 TLDEFQRPKTFFSSFTQTGCTRNMHFAYKVSTTAFGQRKGCLFYDLGCRGPMTHSPCNRILWNRQSSKTRAGMPCLGCTEPEFPFFDLAPGTVFKTQTVMGVPKDMPTGVDKKGYMKLTAAAKGASPAWAEEDIFVV 137
            TLDEF RPKTFFSSFTQTGCTRNMHFAYKVSTTAFGQRKGCLFYDLGCRGPMTHSPCNRILWNR SSKTRAGMPCLGCTEPEFPFFDLAPGTVFKTQTVMGVPKDMP GVDKKGY+KLT+AAKGA+PAWAEEDIFVV
Sbjct:  184 TLDEFHRPKTFFSSFTQTGCTRNMHFAYKVSTTAFGQRKGCLFYDLGCRGPMTHSPCNRILWNRHSSKTRAGMPCLGCTEPEFPFFDLAPGTVFKTQTVMGVPKDMPEGVDKKGYIKLTSAAKGAAPAWAEEDIFVV 320

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BLAST of mRNA_L-digitata_M_contig101001.2.1 vs. uniprot
Match: A0A6A4U1L7_9RHOB (NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A6A4U1L7_9RHOB)

HSP 1 Score: 280 bits (717), Expect = 2.240e-94
Identity = 130/137 (94.89%), Postives = 132/137 (96.35%), Query Frame = 0

Query:    1 TLDEFQRPKTFFSSFTQTGCTRNMHFAYKVSTTAFGQRKGCLFYDLGCRGPMTHSPCNRILWNRQSSKTRAGMPCLGCTEPEFPFFDLAPGTVFKTQTVMGVPKDMPTGVDKKGYMKLTAAAKGASPAWAEEDIFVV 137
            TLDEF RPKTFFSSFTQTGCTRNMHFAYKVSTTAFGQRKGCLFYDLGCRGPMTHSPCNRILWNR SSKTRAGMPCLGCTEPEFPFFDL PGTVFKTQTVMGVPKDMPTGVDK GY+KLTAAAKG +PAWAEEDIFVV
Sbjct:   92 TLDEFHRPKTFFSSFTQTGCTRNMHFAYKVSTTAFGQRKGCLFYDLGCRGPMTHSPCNRILWNRHSSKTRAGMPCLGCTEPEFPFFDLNPGTVFKTQTVMGVPKDMPTGVDKVGYIKLTAAAKGMAPAWAEEDIFVV 228

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BLAST of mRNA_L-digitata_M_contig101001.2.1 vs. uniprot
Match: UPI001BBE79CF (hypothetical protein n=1 Tax=Acidovorax facilis TaxID=12917 RepID=UPI001BBE79CF)

HSP 1 Score: 279 bits (713), Expect = 1.130e-92
Identity = 128/137 (93.43%), Postives = 131/137 (95.62%), Query Frame = 0

Query:    1 TLDEFQRPKTFFSSFTQTGCTRNMHFAYKVSTTAFGQRKGCLFYDLGCRGPMTHSPCNRILWNRQSSKTRAGMPCLGCTEPEFPFFDLAPGTVFKTQTVMGVPKDMPTGVDKKGYMKLTAAAKGASPAWAEEDIFVV 137
            TLDEFQRPKTFF SFTQTGCTRNMHFAYKVS T FGQRKGCLFYDLGCRGPMTHSPCNRILWNRQSSKTRAGMPC+GCTEPEFPFFDLAPGTVFKTQTVMGVPKDMPTGVDKKGY+ LTAAAK A+P WAEEDIFVV
Sbjct:  168 TLDEFQRPKTFFQSFTQTGCTRNMHFAYKVSATEFGQRKGCLFYDLGCRGPMTHSPCNRILWNRQSSKTRAGMPCMGCTEPEFPFFDLAPGTVFKTQTVMGVPKDMPTGVDKKGYLALTAAAKNAAPKWAEEDIFVV 304

[Close]

BLAST of mRNA_L-digitata_M_contig101001.2.1 vs. uniprot
Match: A0A068DJV6_9HYPH (Hydrogenase n=5 Tax=Mesorhizobium TaxID=68287 RepID=A0A068DJV6_9HYPH)

HSP 1 Score: 278 bits (712), Expect = 2.700e-92
Identity = 128/137 (93.43%), Postives = 132/137 (96.35%), Query Frame = 0

Query:    1 TLDEFQRPKTFFSSFTQTGCTRNMHFAYKVSTTAFGQRKGCLFYDLGCRGPMTHSPCNRILWNRQSSKTRAGMPCLGCTEPEFPFFDLAPGTVFKTQTVMGVPKDMPTGVDKKGYMKLTAAAKGASPAWAEEDIFVV 137
            TLDEFQRPKTFF+SFTQTGCTRNMHFAYKVS T FGQRKGCLFYDLGCRGPMTHSPCNRILWNRQSSKTRAGMPC+GCTEPEFPFFDLAPGTVFKTQTVMGVPKDMP+GVDK GY+KLTAAAK ASP WAEEDIFVV
Sbjct:  184 TLDEFQRPKTFFTSFTQTGCTRNMHFAYKVSATEFGQRKGCLFYDLGCRGPMTHSPCNRILWNRQSSKTRAGMPCMGCTEPEFPFFDLAPGTVFKTQTVMGVPKDMPSGVDKTGYIKLTAAAKAASPRWAEEDIFVV 320

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BLAST of mRNA_L-digitata_M_contig101001.2.1 vs. uniprot
Match: A0A2D6GY68_9SPHN (Hydrogenase n=1 Tax=Blastomonas sp. TaxID=1909299 RepID=A0A2D6GY68_9SPHN)

HSP 1 Score: 278 bits (712), Expect = 2.700e-92
Identity = 128/137 (93.43%), Postives = 133/137 (97.08%), Query Frame = 0

Query:    1 TLDEFQRPKTFFSSFTQTGCTRNMHFAYKVSTTAFGQRKGCLFYDLGCRGPMTHSPCNRILWNRQSSKTRAGMPCLGCTEPEFPFFDLAPGTVFKTQTVMGVPKDMPTGVDKKGYMKLTAAAKGASPAWAEEDIFVV 137
            TLDEF RPKTFFSSFTQTGCTRNMHFAYKVSTTAFGQRKGCL+YDLGCRGPMTHSPCNRILWNR SSKTRAGMPCLGCTEPEFPFFDLAPGTVFKTQTVMGVPKD+P GVD+ GY+KLTAAAKGA+PAWAEEDIFVV
Sbjct:  184 TLDEFHRPKTFFSSFTQTGCTRNMHFAYKVSTTAFGQRKGCLYYDLGCRGPMTHSPCNRILWNRVSSKTRAGMPCLGCTEPEFPFFDLAPGTVFKTQTVMGVPKDLPLGVDRTGYVKLTAAAKGAAPAWAEEDIFVV 320

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BLAST of mRNA_L-digitata_M_contig101001.2.1 vs. uniprot
Match: UPI00056424CA (hydrogenase n=3 Tax=Beijerinckiaceae TaxID=45404 RepID=UPI00056424CA)

HSP 1 Score: 278 bits (712), Expect = 2.700e-92
Identity = 128/136 (94.12%), Postives = 132/136 (97.06%), Query Frame = 0

Query:    2 LDEFQRPKTFFSSFTQTGCTRNMHFAYKVSTTAFGQRKGCLFYDLGCRGPMTHSPCNRILWNRQSSKTRAGMPCLGCTEPEFPFFDLAPGTVFKTQTVMGVPKDMPTGVDKKGYMKLTAAAKGASPAWAEEDIFVV 137
            LDEFQRPKTFF+SFTQTGCTRNMHFAYKVS TAFGQRKGCLFYDLGCRGPMTHSPCNRILWNRQSSKTRAGMPCLGCTEPEFPFFDLAPGTVFKTQTVMGVPKDMP GVDK GY+KLTAAAK A+PAWAE+DIFVV
Sbjct:  185 LDEFQRPKTFFTSFTQTGCTRNMHFAYKVSATAFGQRKGCLFYDLGCRGPMTHSPCNRILWNRQSSKTRAGMPCLGCTEPEFPFFDLAPGTVFKTQTVMGVPKDMPAGVDKTGYIKLTAAAKAAAPAWAEKDIFVV 320

[Close]

BLAST of mRNA_L-digitata_M_contig101001.2.1 vs. uniprot
Match: A0A2A4NIP2_9HYPH (Hydrogenase n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A2A4NIP2_9HYPH)

HSP 1 Score: 277 bits (709), Expect = 7.690e-92
Identity = 127/137 (92.70%), Postives = 131/137 (95.62%), Query Frame = 0

Query:    1 TLDEFQRPKTFFSSFTQTGCTRNMHFAYKVSTTAFGQRKGCLFYDLGCRGPMTHSPCNRILWNRQSSKTRAGMPCLGCTEPEFPFFDLAPGTVFKTQTVMGVPKDMPTGVDKKGYMKLTAAAKGASPAWAEEDIFVV 137
            TLDEFQRPKTFFSSFTQTGCTRNMHFAYKVS T FGQRKGCLFYDLGCRGPMTHSPCNRILWNRQSSKTRAGMPCLGCTEPEFPFFDL PGT+FKTQTVMGVPKD+PTGVDKKGY+KLT AAK ASP WAEED+FVV
Sbjct:  184 TLDEFQRPKTFFSSFTQTGCTRNMHFAYKVSATEFGQRKGCLFYDLGCRGPMTHSPCNRILWNRQSSKTRAGMPCLGCTEPEFPFFDLEPGTLFKTQTVMGVPKDLPTGVDKKGYIKLTGAAKAASPQWAEEDMFVV 320

[Close]

BLAST of mRNA_L-digitata_M_contig101001.2.1 vs. uniprot
Match: A0A411HNT6_9GAMM (Hydrogenase (acceptor) n=3 Tax=Xanthomonadales TaxID=135614 RepID=A0A411HNT6_9GAMM)

HSP 1 Score: 277 bits (708), Expect = 1.090e-91
Identity = 127/137 (92.70%), Postives = 130/137 (94.89%), Query Frame = 0

Query:    1 TLDEFQRPKTFFSSFTQTGCTRNMHFAYKVSTTAFGQRKGCLFYDLGCRGPMTHSPCNRILWNRQSSKTRAGMPCLGCTEPEFPFFDLAPGTVFKTQTVMGVPKDMPTGVDKKGYMKLTAAAKGASPAWAEEDIFVV 137
            TLDEFQRPKTFF SFTQTGCTRNMHFAYKVS T FGQRKGCLFYDLGCRGPMTHSPCNRILWNRQSSKTRAGMPCLGCTEPEFPFFDLAPGTVFKTQTVMG+PKDMP GVDKKGY+ LTAAAK A+P WAEEDIFVV
Sbjct:  184 TLDEFQRPKTFFQSFTQTGCTRNMHFAYKVSATEFGQRKGCLFYDLGCRGPMTHSPCNRILWNRQSSKTRAGMPCLGCTEPEFPFFDLAPGTVFKTQTVMGIPKDMPNGVDKKGYIALTAAAKNAAPRWAEEDIFVV 320

[Close]

BLAST of mRNA_L-digitata_M_contig101001.2.1 vs. uniprot
Match: A5E9A1_BRASB (Uptake hydrogenase accessory protein hupU n=54 Tax=Bacteria TaxID=2 RepID=A5E9A1_BRASB)

HSP 1 Score: 276 bits (706), Expect = 1.310e-91
Identity = 127/136 (93.38%), Postives = 130/136 (95.59%), Query Frame = 0

Query:    2 LDEFQRPKTFFSSFTQTGCTRNMHFAYKVSTTAFGQRKGCLFYDLGCRGPMTHSPCNRILWNRQSSKTRAGMPCLGCTEPEFPFFDLAPGTVFKTQTVMGVPKDMPTGVDKKGYMKLTAAAKGASPAWAEEDIFVV 137
            LDEFQRPKTFF+SFTQTGCTRNMHFAYKVS T FGQRKGCLFYDLGCRGPMTHSPCNRILWNRQSSKTR+GMPCLGCTEPEFPFFDLAPGTVFKTQTVMGVPKDMP GVDK GY+KLTAAAK ASP WAEEDIFVV
Sbjct:  169 LDEFQRPKTFFTSFTQTGCTRNMHFAYKVSATEFGQRKGCLFYDLGCRGPMTHSPCNRILWNRQSSKTRSGMPCLGCTEPEFPFFDLAPGTVFKTQTVMGVPKDMPAGVDKTGYIKLTAAAKAASPRWAEEDIFVV 304

The following BLAST results are available for this feature:

BLAST of mRNA_L-digitata_M_contig101001.2.1 vs. uniprot

BLAST of mRNA_L-digitata_M_contig101001.2.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A2E6X2T9_9RHOB	1.350e-97	99.27	Hydrogenase n=2 Tax=Alphaproteobacteria TaxID=2821...	[more]
A0A0T5NWF6_9RHOB	2.020e-94	95.62	Hydrogenase n=28 Tax=Alphaproteobacteria TaxID=282...	[more]
A0A6A4U1L7_9RHOB	2.240e-94	94.89	NADH ubiquinone oxidoreductase 20 kDa subunit n=1 ...	[more]
UPI001BBE79CF	1.130e-92	93.43	hypothetical protein n=1 Tax=Acidovorax facilis Ta...	[more]
A0A068DJV6_9HYPH	2.700e-92	93.43	Hydrogenase n=5 Tax=Mesorhizobium TaxID=68287 RepI...	[more]
A0A2D6GY68_9SPHN	2.700e-92	93.43	Hydrogenase n=1 Tax=Blastomonas sp. TaxID=1909299 ...	[more]
UPI00056424CA	2.700e-92	94.12	hydrogenase n=3 Tax=Beijerinckiaceae TaxID=45404 R...	[more]
A0A2A4NIP2_9HYPH	7.690e-92	92.70	Hydrogenase n=1 Tax=Hyphomicrobiales bacterium Tax...	[more]
A0A411HNT6_9GAMM	1.090e-91	92.70	Hydrogenase (acceptor) n=3 Tax=Xanthomonadales Tax...	[more]
A5E9A1_BRASB	1.310e-91	93.38	Uptake hydrogenase accessory protein hupU n=54 Tax...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00614	NIHGNASESMLL	coord: 38..64 score: 43.27 coord: 65..78 score: 38.64
None	No IPR available	PANTHER	PTHR30013:SF5	HYDROGENASE SMALL SUBUNIT	coord: 2..136
None	No IPR available	SUPERFAMILY	56770	HydA/Nqo6-like	coord: 2..85
IPR027394	Cytochrome-c3 hydrogenase, C-terminal	PFAM	PF14720	NiFe_hyd_SSU_C	coord: 14..85 e-value: 5.0E-23 score: 81.3
IPR037148	[NiFe]-hydrogenase, small subunit, C-terminal domain superfamily	GENE3D	4.10.480.10		coord: 12..88 e-value: 6.7E-21 score: 76.3
IPR001821	[NiFe]-hydrogenase, small subunit	PANTHER	PTHR30013	NIFE / NIFESE HYDROGENASE SMALL SUBUNIT FAMILY MEMBER	coord: 2..136

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-digitata_M_contig101001	contig	L-digitata_M_contig101001:519..932 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Laminaria digitata LdigPH10_18mv male OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-digitata_M_contig101001.2.1	mRNA_L-digitata_M_contig101001.2.1	Laminaria digitata LdigPH10_18mv male	mRNA	L-digitata_M_contig101001 519..932 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-digitata_M_contig101001.2.1 ID=prot_L-digitata_M_contig101001.2.1|Name=mRNA_L-digitata_M_contig101001.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=138bp
TLDEFQRPKTFFSSFTQTGCTRNMHFAYKVSTTAFGQRKGCLFYDLGCRG
PMTHSPCNRILWNRQSSKTRAGMPCLGCTEPEFPFFDLAPGTVFKTQTVM
GVPKDMPTGVDKKGYMKLTAAAKGASPAWAEEDIFVV*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR027394	Cytochrome-c3_hydrogenase_C
IPR037148	NiFe-Hase_small_C_sf
IPR001821	NiFe_hydrogenase_ssu