mRNA_L-digitata_M_contig101001.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101001.2.1
Unique NamemRNA_L-digitata_M_contig101001.2.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
[Close]
BLAST of mRNA_L-digitata_M_contig101001.2.1 vs. uniprot
Match: A0A2E6X2T9_9RHOB (Hydrogenase n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2E6X2T9_9RHOB)

HSP 1 Score: 292 bits (747), Expect = 1.350e-97
Identity = 136/137 (99.27%), Postives = 137/137 (100.00%), Query Frame = 1 
Query:    1 TLDEFQRPKTFFSSFTQTGCTRNMHFAYKVSTTAFGQRKGCLFYDLGCRGPMTHSPCNRILWNRQSSKTRAGMPCLGCTEPEFPFFDLAPGTVFKTQTVMGVPKDMPTGVDKKGYMKLTAAAKGASPAWAEEDIFVV 411
            TLDEFQRPKTFFSSFTQTGCTRNMHFAYKVSTTAFGQRKGCLFYDLGCRGPMTHSPCNRILWNRQSSKTRAGMPCLGCTEPEFPFFDLAPGTVFKTQTVMGVPKDMPTGV+KKGYMKLTAAAKGASPAWAEEDIFVV
Sbjct:  185 TLDEFQRPKTFFSSFTQTGCTRNMHFAYKVSTTAFGQRKGCLFYDLGCRGPMTHSPCNRILWNRQSSKTRAGMPCLGCTEPEFPFFDLAPGTVFKTQTVMGVPKDMPTGVNKKGYMKLTAAAKGASPAWAEEDIFVV 321
[Close]
BLAST of mRNA_L-digitata_M_contig101001.2.1 vs. uniprot
Match: A0A0T5NWF6_9RHOB (Hydrogenase n=28 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A0T5NWF6_9RHOB)

HSP 1 Score: 284 bits (726), Expect = 2.020e-94
Identity = 131/137 (95.62%), Postives = 134/137 (97.81%), Query Frame = 1 
Query:    1 TLDEFQRPKTFFSSFTQTGCTRNMHFAYKVSTTAFGQRKGCLFYDLGCRGPMTHSPCNRILWNRQSSKTRAGMPCLGCTEPEFPFFDLAPGTVFKTQTVMGVPKDMPTGVDKKGYMKLTAAAKGASPAWAEEDIFVV 411
            TLDEF RPKTFFSSFTQTGCTRNMHFAYKVSTTAFGQRKGCLFYDLGCRGPMTHSPCNRILWNR SSKTRAGMPCLGCTEPEFPFFDLAPGTVFKTQTVMGVPKDMP GVDKKGY+KLT+AAKGA+PAWAEEDIFVV
Sbjct:  184 TLDEFHRPKTFFSSFTQTGCTRNMHFAYKVSTTAFGQRKGCLFYDLGCRGPMTHSPCNRILWNRHSSKTRAGMPCLGCTEPEFPFFDLAPGTVFKTQTVMGVPKDMPEGVDKKGYIKLTSAAKGAAPAWAEEDIFVV 320
[Close]
BLAST of mRNA_L-digitata_M_contig101001.2.1 vs. uniprot
Match: A0A6A4U1L7_9RHOB (NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A6A4U1L7_9RHOB)

HSP 1 Score: 280 bits (717), Expect = 2.240e-94
Identity = 130/137 (94.89%), Postives = 132/137 (96.35%), Query Frame = 1 
Query:    1 TLDEFQRPKTFFSSFTQTGCTRNMHFAYKVSTTAFGQRKGCLFYDLGCRGPMTHSPCNRILWNRQSSKTRAGMPCLGCTEPEFPFFDLAPGTVFKTQTVMGVPKDMPTGVDKKGYMKLTAAAKGASPAWAEEDIFVV 411
            TLDEF RPKTFFSSFTQTGCTRNMHFAYKVSTTAFGQRKGCLFYDLGCRGPMTHSPCNRILWNR SSKTRAGMPCLGCTEPEFPFFDL PGTVFKTQTVMGVPKDMPTGVDK GY+KLTAAAKG +PAWAEEDIFVV
Sbjct:   92 TLDEFHRPKTFFSSFTQTGCTRNMHFAYKVSTTAFGQRKGCLFYDLGCRGPMTHSPCNRILWNRHSSKTRAGMPCLGCTEPEFPFFDLNPGTVFKTQTVMGVPKDMPTGVDKVGYIKLTAAAKGMAPAWAEEDIFVV 228
[Close]
BLAST of mRNA_L-digitata_M_contig101001.2.1 vs. uniprot
Match: UPI001BBE79CF (hypothetical protein n=1 Tax=Acidovorax facilis TaxID=12917 RepID=UPI001BBE79CF)

HSP 1 Score: 279 bits (713), Expect = 1.130e-92
Identity = 128/137 (93.43%), Postives = 131/137 (95.62%), Query Frame = 1 
Query:    1 TLDEFQRPKTFFSSFTQTGCTRNMHFAYKVSTTAFGQRKGCLFYDLGCRGPMTHSPCNRILWNRQSSKTRAGMPCLGCTEPEFPFFDLAPGTVFKTQTVMGVPKDMPTGVDKKGYMKLTAAAKGASPAWAEEDIFVV 411
            TLDEFQRPKTFF SFTQTGCTRNMHFAYKVS T FGQRKGCLFYDLGCRGPMTHSPCNRILWNRQSSKTRAGMPC+GCTEPEFPFFDLAPGTVFKTQTVMGVPKDMPTGVDKKGY+ LTAAAK A+P WAEEDIFVV
Sbjct:  168 TLDEFQRPKTFFQSFTQTGCTRNMHFAYKVSATEFGQRKGCLFYDLGCRGPMTHSPCNRILWNRQSSKTRAGMPCMGCTEPEFPFFDLAPGTVFKTQTVMGVPKDMPTGVDKKGYLALTAAAKNAAPKWAEEDIFVV 304
[Close]
BLAST of mRNA_L-digitata_M_contig101001.2.1 vs. uniprot
Match: A0A068DJV6_9HYPH (Hydrogenase n=5 Tax=Mesorhizobium TaxID=68287 RepID=A0A068DJV6_9HYPH)

HSP 1 Score: 278 bits (712), Expect = 2.700e-92
Identity = 128/137 (93.43%), Postives = 132/137 (96.35%), Query Frame = 1 
Query:    1 TLDEFQRPKTFFSSFTQTGCTRNMHFAYKVSTTAFGQRKGCLFYDLGCRGPMTHSPCNRILWNRQSSKTRAGMPCLGCTEPEFPFFDLAPGTVFKTQTVMGVPKDMPTGVDKKGYMKLTAAAKGASPAWAEEDIFVV 411
            TLDEFQRPKTFF+SFTQTGCTRNMHFAYKVS T FGQRKGCLFYDLGCRGPMTHSPCNRILWNRQSSKTRAGMPC+GCTEPEFPFFDLAPGTVFKTQTVMGVPKDMP+GVDK GY+KLTAAAK ASP WAEEDIFVV
Sbjct:  184 TLDEFQRPKTFFTSFTQTGCTRNMHFAYKVSATEFGQRKGCLFYDLGCRGPMTHSPCNRILWNRQSSKTRAGMPCMGCTEPEFPFFDLAPGTVFKTQTVMGVPKDMPSGVDKTGYIKLTAAAKAASPRWAEEDIFVV 320
[Close]
BLAST of mRNA_L-digitata_M_contig101001.2.1 vs. uniprot
Match: A0A2D6GY68_9SPHN (Hydrogenase n=1 Tax=Blastomonas sp. TaxID=1909299 RepID=A0A2D6GY68_9SPHN)

HSP 1 Score: 278 bits (712), Expect = 2.700e-92
Identity = 128/137 (93.43%), Postives = 133/137 (97.08%), Query Frame = 1 
Query:    1 TLDEFQRPKTFFSSFTQTGCTRNMHFAYKVSTTAFGQRKGCLFYDLGCRGPMTHSPCNRILWNRQSSKTRAGMPCLGCTEPEFPFFDLAPGTVFKTQTVMGVPKDMPTGVDKKGYMKLTAAAKGASPAWAEEDIFVV 411
            TLDEF RPKTFFSSFTQTGCTRNMHFAYKVSTTAFGQRKGCL+YDLGCRGPMTHSPCNRILWNR SSKTRAGMPCLGCTEPEFPFFDLAPGTVFKTQTVMGVPKD+P GVD+ GY+KLTAAAKGA+PAWAEEDIFVV
Sbjct:  184 TLDEFHRPKTFFSSFTQTGCTRNMHFAYKVSTTAFGQRKGCLYYDLGCRGPMTHSPCNRILWNRVSSKTRAGMPCLGCTEPEFPFFDLAPGTVFKTQTVMGVPKDLPLGVDRTGYVKLTAAAKGAAPAWAEEDIFVV 320
[Close]
BLAST of mRNA_L-digitata_M_contig101001.2.1 vs. uniprot
Match: UPI00056424CA (hydrogenase n=3 Tax=Beijerinckiaceae TaxID=45404 RepID=UPI00056424CA)

HSP 1 Score: 278 bits (712), Expect = 2.700e-92
Identity = 128/136 (94.12%), Postives = 132/136 (97.06%), Query Frame = 1 
Query:    4 LDEFQRPKTFFSSFTQTGCTRNMHFAYKVSTTAFGQRKGCLFYDLGCRGPMTHSPCNRILWNRQSSKTRAGMPCLGCTEPEFPFFDLAPGTVFKTQTVMGVPKDMPTGVDKKGYMKLTAAAKGASPAWAEEDIFVV 411
            LDEFQRPKTFF+SFTQTGCTRNMHFAYKVS TAFGQRKGCLFYDLGCRGPMTHSPCNRILWNRQSSKTRAGMPCLGCTEPEFPFFDLAPGTVFKTQTVMGVPKDMP GVDK GY+KLTAAAK A+PAWAE+DIFVV
Sbjct:  185 LDEFQRPKTFFTSFTQTGCTRNMHFAYKVSATAFGQRKGCLFYDLGCRGPMTHSPCNRILWNRQSSKTRAGMPCLGCTEPEFPFFDLAPGTVFKTQTVMGVPKDMPAGVDKTGYIKLTAAAKAAAPAWAEKDIFVV 320
[Close]
BLAST of mRNA_L-digitata_M_contig101001.2.1 vs. uniprot
Match: A0A2A4NIP2_9HYPH (Hydrogenase n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A2A4NIP2_9HYPH)

HSP 1 Score: 277 bits (709), Expect = 7.690e-92
Identity = 127/137 (92.70%), Postives = 131/137 (95.62%), Query Frame = 1 
Query:    1 TLDEFQRPKTFFSSFTQTGCTRNMHFAYKVSTTAFGQRKGCLFYDLGCRGPMTHSPCNRILWNRQSSKTRAGMPCLGCTEPEFPFFDLAPGTVFKTQTVMGVPKDMPTGVDKKGYMKLTAAAKGASPAWAEEDIFVV 411
            TLDEFQRPKTFFSSFTQTGCTRNMHFAYKVS T FGQRKGCLFYDLGCRGPMTHSPCNRILWNRQSSKTRAGMPCLGCTEPEFPFFDL PGT+FKTQTVMGVPKD+PTGVDKKGY+KLT AAK ASP WAEED+FVV
Sbjct:  184 TLDEFQRPKTFFSSFTQTGCTRNMHFAYKVSATEFGQRKGCLFYDLGCRGPMTHSPCNRILWNRQSSKTRAGMPCLGCTEPEFPFFDLEPGTLFKTQTVMGVPKDLPTGVDKKGYIKLTGAAKAASPQWAEEDMFVV 320
[Close]
BLAST of mRNA_L-digitata_M_contig101001.2.1 vs. uniprot
Match: A0A411HNT6_9GAMM (Hydrogenase (acceptor) n=3 Tax=Xanthomonadales TaxID=135614 RepID=A0A411HNT6_9GAMM)

HSP 1 Score: 277 bits (708), Expect = 1.090e-91
Identity = 127/137 (92.70%), Postives = 130/137 (94.89%), Query Frame = 1 
Query:    1 TLDEFQRPKTFFSSFTQTGCTRNMHFAYKVSTTAFGQRKGCLFYDLGCRGPMTHSPCNRILWNRQSSKTRAGMPCLGCTEPEFPFFDLAPGTVFKTQTVMGVPKDMPTGVDKKGYMKLTAAAKGASPAWAEEDIFVV 411
            TLDEFQRPKTFF SFTQTGCTRNMHFAYKVS T FGQRKGCLFYDLGCRGPMTHSPCNRILWNRQSSKTRAGMPCLGCTEPEFPFFDLAPGTVFKTQTVMG+PKDMP GVDKKGY+ LTAAAK A+P WAEEDIFVV
Sbjct:  184 TLDEFQRPKTFFQSFTQTGCTRNMHFAYKVSATEFGQRKGCLFYDLGCRGPMTHSPCNRILWNRQSSKTRAGMPCLGCTEPEFPFFDLAPGTVFKTQTVMGIPKDMPNGVDKKGYIALTAAAKNAAPRWAEEDIFVV 320
[Close]
BLAST of mRNA_L-digitata_M_contig101001.2.1 vs. uniprot
Match: A5E9A1_BRASB (Uptake hydrogenase accessory protein hupU n=54 Tax=Bacteria TaxID=2 RepID=A5E9A1_BRASB)

HSP 1 Score: 276 bits (706), Expect = 1.310e-91
Identity = 127/136 (93.38%), Postives = 130/136 (95.59%), Query Frame = 1 
Query:    4 LDEFQRPKTFFSSFTQTGCTRNMHFAYKVSTTAFGQRKGCLFYDLGCRGPMTHSPCNRILWNRQSSKTRAGMPCLGCTEPEFPFFDLAPGTVFKTQTVMGVPKDMPTGVDKKGYMKLTAAAKGASPAWAEEDIFVV 411
            LDEFQRPKTFF+SFTQTGCTRNMHFAYKVS T FGQRKGCLFYDLGCRGPMTHSPCNRILWNRQSSKTR+GMPCLGCTEPEFPFFDLAPGTVFKTQTVMGVPKDMP GVDK GY+KLTAAAK ASP WAEEDIFVV
Sbjct:  169 LDEFQRPKTFFTSFTQTGCTRNMHFAYKVSATEFGQRKGCLFYDLGCRGPMTHSPCNRILWNRQSSKTRSGMPCLGCTEPEFPFFDLAPGTVFKTQTVMGVPKDMPAGVDKTGYIKLTAAAKAASPRWAEEDIFVV 304
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101001.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E6X2T9_9RHOB1.350e-9799.27Hydrogenase n=2 Tax=Alphaproteobacteria TaxID=2821... [more]
A0A0T5NWF6_9RHOB2.020e-9495.62Hydrogenase n=28 Tax=Alphaproteobacteria TaxID=282... [more]
A0A6A4U1L7_9RHOB2.240e-9494.89NADH ubiquinone oxidoreductase 20 kDa subunit n=1 ... [more]
UPI001BBE79CF1.130e-9293.43hypothetical protein n=1 Tax=Acidovorax facilis Ta... [more]
A0A068DJV6_9HYPH2.700e-9293.43Hydrogenase n=5 Tax=Mesorhizobium TaxID=68287 RepI... [more]
A0A2D6GY68_9SPHN2.700e-9293.43Hydrogenase n=1 Tax=Blastomonas sp. TaxID=1909299 ... [more]
UPI00056424CA2.700e-9294.12hydrogenase n=3 Tax=Beijerinckiaceae TaxID=45404 R... [more]
A0A2A4NIP2_9HYPH7.690e-9292.70Hydrogenase n=1 Tax=Hyphomicrobiales bacterium Tax... [more]
A0A411HNT6_9GAMM1.090e-9192.70Hydrogenase (acceptor) n=3 Tax=Xanthomonadales Tax... [more]
A5E9A1_BRASB1.310e-9193.38Uptake hydrogenase accessory protein hupU n=54 Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101001contigL-digitata_M_contig101001:519..932 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1417296.U879_13210
PFAMsNiFe_hyd_SSU_C,Oxidored_q6
Model size414
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00250
KEGG koko:K06282
KEGG ReactionR08034
KEGG Pathwayko00633,ko01120,map00633,map01120
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.51e-97
EggNOG OGsCOG1740@1|root,COG1740@2|Bacteria,1MWAC@1224|Proteobacteria,2TUYA@28211|Alphaproteobacteria
EC1.12.99.6
DescriptionNADH ubiquinone oxidoreductase 20 kDa subunit
Cds size414
COG categoryC
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406613.3739266-CDS-L-digitata_M_contig101001:518..9321682406613.3739266-CDS-L-digitata_M_contig101001:518..932Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101001 519..932 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101001.2.1prot_L-digitata_M_contig101001.2.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101001 519..932 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101001.2.1

>prot_L-digitata_M_contig101001.2.1 ID=prot_L-digitata_M_contig101001.2.1|Name=mRNA_L-digitata_M_contig101001.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=138bp
TLDEFQRPKTFFSSFTQTGCTRNMHFAYKVSTTAFGQRKGCLFYDLGCRG
PMTHSPCNRILWNRQSSKTRAGMPCLGCTEPEFPFFDLAPGTVFKTQTVM
GVPKDMPTGVDKKGYMKLTAAAKGASPAWAEEDIFVV*
back to top

mRNA from alignment at L-digitata_M_contig101001:519..932-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101001.2.1 ID=mRNA_L-digitata_M_contig101001.2.1|Name=mRNA_L-digitata_M_contig101001.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=414bp|location=Sequence derived from alignment at L-digitata_M_contig101001:519..932- (Laminaria digitata LdigPH10_18mv male)
ACGCTCGACGAGTTTCAGCGTCCAAAGACCTTTTTCTCCAGCTTTACGCA
GACCGGTTGTACGAGAAACATGCACTTTGCTTATAAAGTTTCGACAACCG
CATTTGGTCAGCGCAAGGGCTGCTTATTCTATGATCTTGGGTGCCGCGGC
CCCATGACGCACAGTCCTTGTAATCGAATTTTATGGAATCGCCAGTCGTC
TAAAACGCGGGCTGGTATGCCATGTCTTGGGTGTACGGAACCGGAGTTTC
CATTCTTTGATTTGGCACCTGGAACAGTGTTCAAAACTCAAACTGTTATG
GGAGTGCCTAAGGACATGCCGACCGGCGTGGATAAAAAAGGTTATATGAA
GCTGACAGCCGCAGCAAAAGGGGCTTCCCCGGCTTGGGCTGAAGAAGATA
TTTTCGTCGTTTGA
back to top

Coding sequence (CDS) from alignment at L-digitata_M_contig101001:519..932-

>mRNA_L-digitata_M_contig101001.2.1 ID=mRNA_L-digitata_M_contig101001.2.1|Name=mRNA_L-digitata_M_contig101001.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=414bp|location=Sequence derived from alignment at L-digitata_M_contig101001:519..932- (Laminaria digitata LdigPH10_18mv male)
ACGCTCGACGAGTTTCAGCGTCCAAAGACCTTTTTCTCCAGCTTTACGCA
GACCGGTTGTACGAGAAACATGCACTTTGCTTATAAAGTTTCGACAACCG
CATTTGGTCAGCGCAAGGGCTGCTTATTCTATGATCTTGGGTGCCGCGGC
CCCATGACGCACAGTCCTTGTAATCGAATTTTATGGAATCGCCAGTCGTC
TAAAACGCGGGCTGGTATGCCATGTCTTGGGTGTACGGAACCGGAGTTTC
CATTCTTTGATTTGGCACCTGGAACAGTGTTCAAAACTCAAACTGTTATG
GGAGTGCCTAAGGACATGCCGACCGGCGTGGATAAAAAAGGTTATATGAA
GCTGACAGCCGCAGCAAAAGGGGCTTCCCCGGCTTGGGCTGAAGAAGATA
TTTTCGTCGTTTGA
back to top