prot_L-digitata_M_contig100319.2.1 (polypeptide) Laminaria digitata LdigPH10_18mv male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-digitata_M_contig100319.2.1
Unique Name	prot_L-digitata_M_contig100319.2.1
Type	polypeptide
Organism	Laminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Sequence length	89

Homology

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BLAST of mRNA_L-digitata_M_contig100319.2.1 vs. uniprot
Match: A0A7S2V6E6_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6E6_9STRA)

HSP 1 Score: 129 bits (323), Expect = 3.760e-33
Identity = 59/90 (65.56%), Postives = 76/90 (84.44%), Query Frame = 0

Query:    1 SQVNLNTSPGNPVVTCRVNNKYAFVELRSSEECTKALNLNGIPFMGQMLKIGRPSKYQGPITPASTWQRLTGQEAAD--NVVDPATKVYR 88
            +QV L T+PGNP++ CRV+NK+AF+ELRS+EE    L+LNGIPFMGQ+LKIGRP+KY GP+  ASTWQ LTGQ+A +  +VVDP+TK+YR
Sbjct:  232 NQVKLTTAPGNPIIGCRVSNKFAFIELRSAEETNNCLSLNGIPFMGQLLKIGRPTKYCGPVIQASTWQALTGQQAPEGASVVDPSTKLYR 321

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BLAST of mRNA_L-digitata_M_contig100319.2.1 vs. uniprot
Match: A0A7R9UCU5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UCU5_9STRA)

HSP 1 Score: 115 bits (287), Expect = 1.170e-28
Identity = 53/87 (60.92%), Postives = 66/87 (75.86%), Query Frame = 0

Query:    2 QVNLNTSPGNPVVTCRVNNKYAFVELRSSEECTKALNLNGIPFMGQMLKIGRPSKYQGPITPASTWQRLTGQEAADNVVDPATKVYR 88
            + NL    GNP+V+ R+N+++AFVE RS EE T ALNLNG+PFMG +LKIGRPSKY GP + A TWQ LTG+     VVDP+TK+YR
Sbjct:   77 KTNLLHHAGNPIVSTRINSRFAFVEFRSVEEATSALNLNGVPFMGTLLKIGRPSKYVGPASQAVTWQELTGERPDPQVVDPSTKLYR 163

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BLAST of mRNA_L-digitata_M_contig100319.2.1 vs. uniprot
Match: A0A7S3XTW3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XTW3_HETAK)

HSP 1 Score: 115 bits (287), Expect = 1.590e-28
Identity = 53/91 (58.24%), Postives = 67/91 (73.63%), Query Frame = 0

Query:    2 QVNLNTSPGNPVVTCRVNNKYAFVELRSSEECTKALNLNGIPFMGQMLKIGRPSKYQGPITPASTWQRLTGQEAADN----VVDPATKVYR 88
            QV  N   GNP+++CR++ K+AF+ELR++EE    LNLNGIPFMG  LK+GRP+KY GPITPA TWQ+LTGQ    +     VDP TK+YR
Sbjct:   83 QVKQNIEEGNPIMSCRMSAKFAFIELRTAEEANNCLNLNGIPFMGYYLKVGRPTKYAGPITPAKTWQQLTGQAPPADPTAVAVDPQTKIYR 173

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BLAST of mRNA_L-digitata_M_contig100319.2.1 vs. uniprot
Match: A0A7S4D6X1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6X1_HETAK)

HSP 1 Score: 115 bits (287), Expect = 1.590e-28
Identity = 53/91 (58.24%), Postives = 67/91 (73.63%), Query Frame = 0

Query:    2 QVNLNTSPGNPVVTCRVNNKYAFVELRSSEECTKALNLNGIPFMGQMLKIGRPSKYQGPITPASTWQRLTGQEAADN----VVDPATKVYR 88
            QV  N   GNP+++CR++ K+AF+ELR++EE    LNLNGIPFMG  LK+GRP+KY GPITPA TWQ+LTGQ    +     VDP TK+YR
Sbjct:   83 QVKQNIEEGNPIMSCRMSAKFAFIELRTAEEANNCLNLNGIPFMGYYLKVGRPTKYAGPITPAKTWQQLTGQAPPADPTAVAVDPQTKIYR 173

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BLAST of mRNA_L-digitata_M_contig100319.2.1 vs. uniprot
Match: A0A7S4D6W7_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6W7_HETAK)

HSP 1 Score: 115 bits (287), Expect = 4.790e-28
Identity = 53/91 (58.24%), Postives = 67/91 (73.63%), Query Frame = 0

Query:    2 QVNLNTSPGNPVVTCRVNNKYAFVELRSSEECTKALNLNGIPFMGQMLKIGRPSKYQGPITPASTWQRLTGQEAADN----VVDPATKVYR 88
            QV  N   GNP+++CR++ K+AF+ELR++EE    LNLNGIPFMG  LK+GRP+KY GPITPA TWQ+LTGQ    +     VDP TK+YR
Sbjct:   83 QVKQNIEEGNPIMSCRMSAKFAFIELRTAEEANNCLNLNGIPFMGYYLKVGRPTKYAGPITPAKTWQQLTGQAPPADPTAVAVDPQTKIYR 173

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BLAST of mRNA_L-digitata_M_contig100319.2.1 vs. uniprot
Match: A0A835ZHK3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHK3_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.010e-27
Identity = 59/100 (59.00%), Postives = 70/100 (70.00%), Query Frame = 0

Query:    1 SQVNLNTSPGNPVVTCRVNNKYAFVELRSSEECTKALNLNGIPFMGQMLKIGRPSKYQGPITPASTWQRLTGQ-EAADNVV-----------DPATKVYR 88
            +QVNLNT+PGNP+V CRV+NK+AF+ELRS +E    L+LN IPFMG  LKIGRPSKY+GP    +TWQ LTGQ E A   +           DPATKVYR
Sbjct:   73 AQVNLNTAPGNPIVQCRVSNKFAFIELRSVDETNNCLSLNQIPFMGTPLKIGRPSKYRGPPVNCTTWQALTGQPELAGGTMMPGAGGSMSGLDPATKVYR 172

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BLAST of mRNA_L-digitata_M_contig100319.2.1 vs. uniprot
Match: A0A7S1UKM1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UKM1_9STRA)

HSP 1 Score: 111 bits (278), Expect = 2.760e-27
Identity = 52/87 (59.77%), Postives = 63/87 (72.41%), Query Frame = 0

Query:    2 QVNLNTSPGNPVVTCRVNNKYAFVELRSSEECTKALNLNGIPFMGQMLKIGRPSKYQGPITPASTWQRLTGQEAADNVVDPATKVYR 88
            + NL    GNPV + R+N+++AFVE R+ EECT ALNLN IPFMG  LKIGRP+KY GP + A TWQ LTGQ      VDP+TK+YR
Sbjct:   74 RTNLLHEEGNPVASTRINSRFAFVEFRTVEECTSALNLNAIPFMGMTLKIGRPAKYAGPPSTALTWQELTGQPKQAEAVDPSTKLYR 160

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BLAST of mRNA_L-digitata_M_contig100319.2.1 vs. uniprot
Match: A0A7S2FI96_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FI96_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 5.190e-23
Identity = 45/72 (62.50%), Postives = 54/72 (75.00%), Query Frame = 0

Query:   18 VNNKYAFVELRSSEECTKALNLNGIPFMGQMLKIGRPSKYQGPITPASTWQRLTGQEAADNV-VDPATKVYR 88
            ++NK+AF+E+RS  E    L++NGIPFMG MLKIGRP+KYQG    ASTWQ+LTGQ   D   VDP TKVYR
Sbjct:    7 LSNKFAFIEMRSIAETNNCLSINGIPFMGNMLKIGRPTKYQGAQVQASTWQQLTGQNGTDGPSVDPTTKVYR 78

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BLAST of mRNA_L-digitata_M_contig100319.2.1 vs. uniprot
Match: A0A7R9WB13_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WB13_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 9.290e-22
Identity = 39/69 (56.52%), Postives = 53/69 (76.81%), Query Frame = 0

Query:    2 QVNLNTSPGNPVVTCRVNNKYAFVELRSSEECTKALNLNGIPFMGQMLKIGRPSKYQGPITPASTWQRL 70
            QV L+ +PGNP+VTCR + K+AF+ELR++EE   ALNLN IP++G  L++GRPSKY GP TP   W+ +
Sbjct:   48 QVGLSKAPGNPIVTCRTSGKFAFIELRTTEEAASALNLNNIPYLGAQLRVGRPSKYTGPETPHGNWEDI 116

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BLAST of mRNA_L-digitata_M_contig100319.2.1 vs. uniprot
Match: A0A7S1YH23_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YH23_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.380e-21
Identity = 42/79 (53.16%), Postives = 54/79 (68.35%), Query Frame = 0

Query:    2 QVNLNTSPGNPVVTCRVNNKYAFVELRSSEECTKALNLNGIPFMGQMLKIGRPSKYQGPITPASTWQRLTGQEAADNVV 80
            +V L  S   PV   RVN K+AF+E R +E   KALN+NG+PF+G +LK+ RPSKY+GP+ PA TWQ LTGQ    + V
Sbjct:    2 RVGLCQSHETPVTVSRVNQKFAFIECRDAEMANKALNMNGVPFLGAILKVSRPSKYEGPMIPARTWQELTGQSLPQDAV 80

The following BLAST results are available for this feature:

BLAST of mRNA_L-digitata_M_contig100319.2.1 vs. uniprot

BLAST of mRNA_L-digitata_M_contig100319.2.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A7S2V6E6_9STRA	3.760e-33	65.56	Hypothetical protein n=2 Tax=Fibrocapsa japonica T...	[more]
A0A7R9UCU5_9STRA	1.170e-28	60.92	Hypothetical protein (Fragment) n=1 Tax=Pinguiococ...	[more]
A0A7S3XTW3_HETAK	1.590e-28	58.24	Hypothetical protein n=1 Tax=Heterosigma akashiwo ...	[more]
A0A7S4D6X1_HETAK	1.590e-28	58.24	Hypothetical protein n=2 Tax=Heterosigma akashiwo ...	[more]
A0A7S4D6W7_HETAK	4.790e-28	58.24	Hypothetical protein n=2 Tax=Heterosigma akashiwo ...	[more]
A0A835ZHK3_9STRA	1.010e-27	59.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A7S1UKM1_9STRA	2.760e-27	59.77	Hypothetical protein (Fragment) n=1 Tax=Phaeomonas...	[more]
A0A7S2FI96_9STRA	5.190e-23	62.50	Hypothetical protein (Fragment) n=1 Tax=Florenciel...	[more]
A0A7R9WB13_9STRA	9.290e-22	56.52	Hypothetical protein n=1 Tax=Pseudictyota dubia Ta...	[more]
A0A7S1YH23_9STRA	1.380e-21	53.16	Hypothetical protein (Fragment) n=1 Tax=Grammatoph...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 1..82 e-value: 1.4E-13 score: 52.8
None	No IPR available	PANTHER	PTHR23139	RNA-BINDING PROTEIN	coord: 4..86
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 10..53

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-digitata_M_contig100319	contig	L-digitata_M_contig100319:271..842 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Laminaria digitata LdigPH10_18mv male OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-digitata_M_contig100319.2.1	mRNA_L-digitata_M_contig100319.2.1	Laminaria digitata LdigPH10_18mv male	mRNA	L-digitata_M_contig100319 271..842 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-digitata_M_contig100319.2.1 ID=prot_L-digitata_M_contig100319.2.1|Name=mRNA_L-digitata_M_contig100319.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=89bp
SQVNLNTSPGNPVVTCRVNNKYAFVELRSSEECTKALNLNGIPFMGQMLK
IGRPSKYQGPITPASTWQRLTGQEAADNVVDPATKVYR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf