mRNA_L-digitata_M_contig100319.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100319.2.1
Unique NamemRNA_L-digitata_M_contig100319.2.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig100319.2.1 vs. uniprot
Match: A0A7S2V6E6_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6E6_9STRA)

HSP 1 Score: 129 bits (323), Expect = 3.760e-33
Identity = 59/90 (65.56%), Postives = 76/90 (84.44%), Query Frame = 1
Query:    1 SQVNLNTSPGNPVVTCRVNNKYAFVELRSSEECTKALNLNGIPFMGQMLKIGRPSKYQGPITPASTWQRLTGQEAAD--NVVDPATKVYR 264
            +QV L T+PGNP++ CRV+NK+AF+ELRS+EE    L+LNGIPFMGQ+LKIGRP+KY GP+  ASTWQ LTGQ+A +  +VVDP+TK+YR
Sbjct:  232 NQVKLTTAPGNPIIGCRVSNKFAFIELRSAEETNNCLSLNGIPFMGQLLKIGRPTKYCGPVIQASTWQALTGQQAPEGASVVDPSTKLYR 321          
BLAST of mRNA_L-digitata_M_contig100319.2.1 vs. uniprot
Match: A0A7R9UCU5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UCU5_9STRA)

HSP 1 Score: 115 bits (287), Expect = 1.170e-28
Identity = 53/87 (60.92%), Postives = 66/87 (75.86%), Query Frame = 1
Query:    4 QVNLNTSPGNPVVTCRVNNKYAFVELRSSEECTKALNLNGIPFMGQMLKIGRPSKYQGPITPASTWQRLTGQEAADNVVDPATKVYR 264
            + NL    GNP+V+ R+N+++AFVE RS EE T ALNLNG+PFMG +LKIGRPSKY GP + A TWQ LTG+     VVDP+TK+YR
Sbjct:   77 KTNLLHHAGNPIVSTRINSRFAFVEFRSVEEATSALNLNGVPFMGTLLKIGRPSKYVGPASQAVTWQELTGERPDPQVVDPSTKLYR 163          
BLAST of mRNA_L-digitata_M_contig100319.2.1 vs. uniprot
Match: A0A7S3XTW3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XTW3_HETAK)

HSP 1 Score: 115 bits (287), Expect = 1.590e-28
Identity = 53/91 (58.24%), Postives = 67/91 (73.63%), Query Frame = 1
Query:    4 QVNLNTSPGNPVVTCRVNNKYAFVELRSSEECTKALNLNGIPFMGQMLKIGRPSKYQGPITPASTWQRLTGQEAADN----VVDPATKVYR 264
            QV  N   GNP+++CR++ K+AF+ELR++EE    LNLNGIPFMG  LK+GRP+KY GPITPA TWQ+LTGQ    +     VDP TK+YR
Sbjct:   83 QVKQNIEEGNPIMSCRMSAKFAFIELRTAEEANNCLNLNGIPFMGYYLKVGRPTKYAGPITPAKTWQQLTGQAPPADPTAVAVDPQTKIYR 173          
BLAST of mRNA_L-digitata_M_contig100319.2.1 vs. uniprot
Match: A0A7S4D6X1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6X1_HETAK)

HSP 1 Score: 115 bits (287), Expect = 1.590e-28
Identity = 53/91 (58.24%), Postives = 67/91 (73.63%), Query Frame = 1
Query:    4 QVNLNTSPGNPVVTCRVNNKYAFVELRSSEECTKALNLNGIPFMGQMLKIGRPSKYQGPITPASTWQRLTGQEAADN----VVDPATKVYR 264
            QV  N   GNP+++CR++ K+AF+ELR++EE    LNLNGIPFMG  LK+GRP+KY GPITPA TWQ+LTGQ    +     VDP TK+YR
Sbjct:   83 QVKQNIEEGNPIMSCRMSAKFAFIELRTAEEANNCLNLNGIPFMGYYLKVGRPTKYAGPITPAKTWQQLTGQAPPADPTAVAVDPQTKIYR 173          
BLAST of mRNA_L-digitata_M_contig100319.2.1 vs. uniprot
Match: A0A7S4D6W7_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6W7_HETAK)

HSP 1 Score: 115 bits (287), Expect = 4.790e-28
Identity = 53/91 (58.24%), Postives = 67/91 (73.63%), Query Frame = 1
Query:    4 QVNLNTSPGNPVVTCRVNNKYAFVELRSSEECTKALNLNGIPFMGQMLKIGRPSKYQGPITPASTWQRLTGQEAADN----VVDPATKVYR 264
            QV  N   GNP+++CR++ K+AF+ELR++EE    LNLNGIPFMG  LK+GRP+KY GPITPA TWQ+LTGQ    +     VDP TK+YR
Sbjct:   83 QVKQNIEEGNPIMSCRMSAKFAFIELRTAEEANNCLNLNGIPFMGYYLKVGRPTKYAGPITPAKTWQQLTGQAPPADPTAVAVDPQTKIYR 173          
BLAST of mRNA_L-digitata_M_contig100319.2.1 vs. uniprot
Match: A0A835ZHK3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHK3_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.010e-27
Identity = 59/100 (59.00%), Postives = 70/100 (70.00%), Query Frame = 1
Query:    1 SQVNLNTSPGNPVVTCRVNNKYAFVELRSSEECTKALNLNGIPFMGQMLKIGRPSKYQGPITPASTWQRLTGQ-EAADNVV-----------DPATKVYR 264
            +QVNLNT+PGNP+V CRV+NK+AF+ELRS +E    L+LN IPFMG  LKIGRPSKY+GP    +TWQ LTGQ E A   +           DPATKVYR
Sbjct:   73 AQVNLNTAPGNPIVQCRVSNKFAFIELRSVDETNNCLSLNQIPFMGTPLKIGRPSKYRGPPVNCTTWQALTGQPELAGGTMMPGAGGSMSGLDPATKVYR 172          
BLAST of mRNA_L-digitata_M_contig100319.2.1 vs. uniprot
Match: A0A7S1UKM1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UKM1_9STRA)

HSP 1 Score: 111 bits (278), Expect = 2.760e-27
Identity = 52/87 (59.77%), Postives = 63/87 (72.41%), Query Frame = 1
Query:    4 QVNLNTSPGNPVVTCRVNNKYAFVELRSSEECTKALNLNGIPFMGQMLKIGRPSKYQGPITPASTWQRLTGQEAADNVVDPATKVYR 264
            + NL    GNPV + R+N+++AFVE R+ EECT ALNLN IPFMG  LKIGRP+KY GP + A TWQ LTGQ      VDP+TK+YR
Sbjct:   74 RTNLLHEEGNPVASTRINSRFAFVEFRTVEECTSALNLNAIPFMGMTLKIGRPAKYAGPPSTALTWQELTGQPKQAEAVDPSTKLYR 160          
BLAST of mRNA_L-digitata_M_contig100319.2.1 vs. uniprot
Match: A0A7S2FI96_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FI96_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 5.190e-23
Identity = 45/72 (62.50%), Postives = 54/72 (75.00%), Query Frame = 1
Query:   52 VNNKYAFVELRSSEECTKALNLNGIPFMGQMLKIGRPSKYQGPITPASTWQRLTGQEAADNV-VDPATKVYR 264
            ++NK+AF+E+RS  E    L++NGIPFMG MLKIGRP+KYQG    ASTWQ+LTGQ   D   VDP TKVYR
Sbjct:    7 LSNKFAFIEMRSIAETNNCLSINGIPFMGNMLKIGRPTKYQGAQVQASTWQQLTGQNGTDGPSVDPTTKVYR 78          
BLAST of mRNA_L-digitata_M_contig100319.2.1 vs. uniprot
Match: A0A7R9WB13_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WB13_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 9.290e-22
Identity = 39/69 (56.52%), Postives = 53/69 (76.81%), Query Frame = 1
Query:    4 QVNLNTSPGNPVVTCRVNNKYAFVELRSSEECTKALNLNGIPFMGQMLKIGRPSKYQGPITPASTWQRL 210
            QV L+ +PGNP+VTCR + K+AF+ELR++EE   ALNLN IP++G  L++GRPSKY GP TP   W+ +
Sbjct:   48 QVGLSKAPGNPIVTCRTSGKFAFIELRTTEEAASALNLNNIPYLGAQLRVGRPSKYTGPETPHGNWEDI 116          
BLAST of mRNA_L-digitata_M_contig100319.2.1 vs. uniprot
Match: A0A7S1YH23_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YH23_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.380e-21
Identity = 42/79 (53.16%), Postives = 54/79 (68.35%), Query Frame = 1
Query:    4 QVNLNTSPGNPVVTCRVNNKYAFVELRSSEECTKALNLNGIPFMGQMLKIGRPSKYQGPITPASTWQRLTGQEAADNVV 240
            +V L  S   PV   RVN K+AF+E R +E   KALN+NG+PF+G +LK+ RPSKY+GP+ PA TWQ LTGQ    + V
Sbjct:    2 RVGLCQSHETPVTVSRVNQKFAFIECRDAEMANKALNMNGVPFLGAILKVSRPSKYEGPMIPARTWQELTGQSLPQDAV 80          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100319.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2V6E6_9STRA3.760e-3365.56Hypothetical protein n=2 Tax=Fibrocapsa japonica T... [more]
A0A7R9UCU5_9STRA1.170e-2860.92Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S3XTW3_HETAK1.590e-2858.24Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S4D6X1_HETAK1.590e-2858.24Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S4D6W7_HETAK4.790e-2858.24Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A835ZHK3_9STRA1.010e-2759.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1UKM1_9STRA2.760e-2759.77Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S2FI96_9STRA5.190e-2362.50Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7R9WB13_9STRA9.290e-2256.52Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S1YH23_9STRA1.380e-2153.16Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100319contigL-digitata_M_contig100319:271..842 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog44056.XP_009040785.1
PFAMsHA2,Helicase_C,OB_NTP_bind,RRM_1,S1
Model size267
Max annot lvl2759|Eukaryota
KEGG koko:K12818,ko:K12837,ko:K16487
KEGG Pathwayko03040,map03040
Hectar predicted targeting categoryother localisation
Exons2
Evalue7.92e-21
EggNOG OGsKOG0120@1|root,KOG0120@2759|Eukaryota
EC3.6.4.13
Descriptionpre-mRNA 3'-splice site binding
Cds size267
COG categoryJ
BRITEko00000,ko00001,ko01000,ko03036,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406606.057205-CDS-L-digitata_M_contig100319:270..4111682406606.057205-CDS-L-digitata_M_contig100319:270..411Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100319 271..411 +
1682406606.0657244-CDS-L-digitata_M_contig100319:716..8421682406606.0657244-CDS-L-digitata_M_contig100319:716..842Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100319 717..842 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100319.2.1prot_L-digitata_M_contig100319.2.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100319 271..842 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100319.2.1

>prot_L-digitata_M_contig100319.2.1 ID=prot_L-digitata_M_contig100319.2.1|Name=mRNA_L-digitata_M_contig100319.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=89bp
SQVNLNTSPGNPVVTCRVNNKYAFVELRSSEECTKALNLNGIPFMGQMLK
IGRPSKYQGPITPASTWQRLTGQEAADNVVDPATKVYR*
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mRNA from alignment at L-digitata_M_contig100319:271..842+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100319.2.1 ID=mRNA_L-digitata_M_contig100319.2.1|Name=mRNA_L-digitata_M_contig100319.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=572bp|location=Sequence derived from alignment at L-digitata_M_contig100319:271..842+ (Laminaria digitata LdigPH10_18mv male)
TCACAGGTGAACCTGAACACGTCCCCCGGCAACCCTGTGGTGACCTGCCG CGTGAACAACAAGTACGCCTTCGTGGAACTCCGGTCTTCTGAAGAGTGCA CCAAGGCTCTTAACCTTAACGGTATCCCGTTCATGGGACAGGTGCGTGTT TTGTGTTTTGTATTTCGTGTTTAGTTGCTTTGTTGAGCTTTTTTTGCGTG TTGTTGGTTTGATTTGTGTTTTTGCGTTTTGTGCGTGGCGTTTGTTTTCG TTTTTATATTATACAGCAGTAGTGTTGGTTTGGCTTTTATTTTGCGTTTT GTGTTTTGCGTGTGTTCGTATCATATAGTAGTTAAACAAAAATGTTTTTT TTTTAATGGTTCTTCCAAAATATGAACCCAAATTTTATAAACTCCCAAAT TATTGAGTGCTGCCGGGTACGTACGTGTGATACTCGCCTTTCGCAGATGC TCAAGATTGGACGGCCTTCGAAGTACCAGGGCCCCATCACTCCGGCCTCC ACATGGCAGCGGCTCACGGGCCAGGAAGCGGCCGACAACGTTGTCGACCC GGCCACGAAGGTTTACAGGTGA
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Coding sequence (CDS) from alignment at L-digitata_M_contig100319:271..842+

>mRNA_L-digitata_M_contig100319.2.1 ID=mRNA_L-digitata_M_contig100319.2.1|Name=mRNA_L-digitata_M_contig100319.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=267bp|location=Sequence derived from alignment at L-digitata_M_contig100319:271..842+ (Laminaria digitata LdigPH10_18mv male)
TCACAGGTGAACCTGAACACGTCCCCCGGCAACCCTGTGGTGACCTGCCG
CGTGAACAACAAGTACGCCTTCGTGGAACTCCGGTCTTCTGAAGAGTGCA
CCAAGGCTCTTAACCTTAACGGTATCCCGTTCATGGGACAGATGCTCAAG
ATTGGACGGCCTTCGAAGTACCAGGGCCCCATCACTCCGGCCTCCACATG
GCAGCGGCTCACGGGCCAGGAAGCGGCCGACAACGTTGTCGACCCGGCCA
CGAAGGTTTACAGGTGA
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