mRNA_L-digitata_M_contig100319.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male
|
Overview
Homology
BLAST of mRNA_L-digitata_M_contig100319.2.1 vs. uniprot
Match: A0A7S2V6E6_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6E6_9STRA) HSP 1 Score: 129 bits (323), Expect = 3.760e-33 Identity = 59/90 (65.56%), Postives = 76/90 (84.44%), Query Frame = 1
Query: 1 SQVNLNTSPGNPVVTCRVNNKYAFVELRSSEECTKALNLNGIPFMGQMLKIGRPSKYQGPITPASTWQRLTGQEAAD--NVVDPATKVYR 264
+QV L T+PGNP++ CRV+NK+AF+ELRS+EE L+LNGIPFMGQ+LKIGRP+KY GP+ ASTWQ LTGQ+A + +VVDP+TK+YR
Sbjct: 232 NQVKLTTAPGNPIIGCRVSNKFAFIELRSAEETNNCLSLNGIPFMGQLLKIGRPTKYCGPVIQASTWQALTGQQAPEGASVVDPSTKLYR 321
BLAST of mRNA_L-digitata_M_contig100319.2.1 vs. uniprot
Match: A0A7R9UCU5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UCU5_9STRA) HSP 1 Score: 115 bits (287), Expect = 1.170e-28 Identity = 53/87 (60.92%), Postives = 66/87 (75.86%), Query Frame = 1
Query: 4 QVNLNTSPGNPVVTCRVNNKYAFVELRSSEECTKALNLNGIPFMGQMLKIGRPSKYQGPITPASTWQRLTGQEAADNVVDPATKVYR 264
+ NL GNP+V+ R+N+++AFVE RS EE T ALNLNG+PFMG +LKIGRPSKY GP + A TWQ LTG+ VVDP+TK+YR
Sbjct: 77 KTNLLHHAGNPIVSTRINSRFAFVEFRSVEEATSALNLNGVPFMGTLLKIGRPSKYVGPASQAVTWQELTGERPDPQVVDPSTKLYR 163
BLAST of mRNA_L-digitata_M_contig100319.2.1 vs. uniprot
Match: A0A7S3XTW3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XTW3_HETAK) HSP 1 Score: 115 bits (287), Expect = 1.590e-28 Identity = 53/91 (58.24%), Postives = 67/91 (73.63%), Query Frame = 1
Query: 4 QVNLNTSPGNPVVTCRVNNKYAFVELRSSEECTKALNLNGIPFMGQMLKIGRPSKYQGPITPASTWQRLTGQEAADN----VVDPATKVYR 264
QV N GNP+++CR++ K+AF+ELR++EE LNLNGIPFMG LK+GRP+KY GPITPA TWQ+LTGQ + VDP TK+YR
Sbjct: 83 QVKQNIEEGNPIMSCRMSAKFAFIELRTAEEANNCLNLNGIPFMGYYLKVGRPTKYAGPITPAKTWQQLTGQAPPADPTAVAVDPQTKIYR 173
BLAST of mRNA_L-digitata_M_contig100319.2.1 vs. uniprot
Match: A0A7S4D6X1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6X1_HETAK) HSP 1 Score: 115 bits (287), Expect = 1.590e-28 Identity = 53/91 (58.24%), Postives = 67/91 (73.63%), Query Frame = 1
Query: 4 QVNLNTSPGNPVVTCRVNNKYAFVELRSSEECTKALNLNGIPFMGQMLKIGRPSKYQGPITPASTWQRLTGQEAADN----VVDPATKVYR 264
QV N GNP+++CR++ K+AF+ELR++EE LNLNGIPFMG LK+GRP+KY GPITPA TWQ+LTGQ + VDP TK+YR
Sbjct: 83 QVKQNIEEGNPIMSCRMSAKFAFIELRTAEEANNCLNLNGIPFMGYYLKVGRPTKYAGPITPAKTWQQLTGQAPPADPTAVAVDPQTKIYR 173
BLAST of mRNA_L-digitata_M_contig100319.2.1 vs. uniprot
Match: A0A7S4D6W7_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6W7_HETAK) HSP 1 Score: 115 bits (287), Expect = 4.790e-28 Identity = 53/91 (58.24%), Postives = 67/91 (73.63%), Query Frame = 1
Query: 4 QVNLNTSPGNPVVTCRVNNKYAFVELRSSEECTKALNLNGIPFMGQMLKIGRPSKYQGPITPASTWQRLTGQEAADN----VVDPATKVYR 264
QV N GNP+++CR++ K+AF+ELR++EE LNLNGIPFMG LK+GRP+KY GPITPA TWQ+LTGQ + VDP TK+YR
Sbjct: 83 QVKQNIEEGNPIMSCRMSAKFAFIELRTAEEANNCLNLNGIPFMGYYLKVGRPTKYAGPITPAKTWQQLTGQAPPADPTAVAVDPQTKIYR 173
BLAST of mRNA_L-digitata_M_contig100319.2.1 vs. uniprot
Match: A0A835ZHK3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHK3_9STRA) HSP 1 Score: 114 bits (284), Expect = 1.010e-27 Identity = 59/100 (59.00%), Postives = 70/100 (70.00%), Query Frame = 1
Query: 1 SQVNLNTSPGNPVVTCRVNNKYAFVELRSSEECTKALNLNGIPFMGQMLKIGRPSKYQGPITPASTWQRLTGQ-EAADNVV-----------DPATKVYR 264
+QVNLNT+PGNP+V CRV+NK+AF+ELRS +E L+LN IPFMG LKIGRPSKY+GP +TWQ LTGQ E A + DPATKVYR
Sbjct: 73 AQVNLNTAPGNPIVQCRVSNKFAFIELRSVDETNNCLSLNQIPFMGTPLKIGRPSKYRGPPVNCTTWQALTGQPELAGGTMMPGAGGSMSGLDPATKVYR 172
BLAST of mRNA_L-digitata_M_contig100319.2.1 vs. uniprot
Match: A0A7S1UKM1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UKM1_9STRA) HSP 1 Score: 111 bits (278), Expect = 2.760e-27 Identity = 52/87 (59.77%), Postives = 63/87 (72.41%), Query Frame = 1
Query: 4 QVNLNTSPGNPVVTCRVNNKYAFVELRSSEECTKALNLNGIPFMGQMLKIGRPSKYQGPITPASTWQRLTGQEAADNVVDPATKVYR 264
+ NL GNPV + R+N+++AFVE R+ EECT ALNLN IPFMG LKIGRP+KY GP + A TWQ LTGQ VDP+TK+YR
Sbjct: 74 RTNLLHEEGNPVASTRINSRFAFVEFRTVEECTSALNLNAIPFMGMTLKIGRPAKYAGPPSTALTWQELTGQPKQAEAVDPSTKLYR 160
BLAST of mRNA_L-digitata_M_contig100319.2.1 vs. uniprot
Match: A0A7S2FI96_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FI96_9STRA) HSP 1 Score: 95.5 bits (236), Expect = 5.190e-23 Identity = 45/72 (62.50%), Postives = 54/72 (75.00%), Query Frame = 1
Query: 52 VNNKYAFVELRSSEECTKALNLNGIPFMGQMLKIGRPSKYQGPITPASTWQRLTGQEAADNV-VDPATKVYR 264
++NK+AF+E+RS E L++NGIPFMG MLKIGRP+KYQG ASTWQ+LTGQ D VDP TKVYR
Sbjct: 7 LSNKFAFIEMRSIAETNNCLSINGIPFMGNMLKIGRPTKYQGAQVQASTWQQLTGQNGTDGPSVDPTTKVYR 78
BLAST of mRNA_L-digitata_M_contig100319.2.1 vs. uniprot
Match: A0A7R9WB13_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WB13_9STRA) HSP 1 Score: 94.4 bits (233), Expect = 9.290e-22 Identity = 39/69 (56.52%), Postives = 53/69 (76.81%), Query Frame = 1
Query: 4 QVNLNTSPGNPVVTCRVNNKYAFVELRSSEECTKALNLNGIPFMGQMLKIGRPSKYQGPITPASTWQRL 210
QV L+ +PGNP+VTCR + K+AF+ELR++EE ALNLN IP++G L++GRPSKY GP TP W+ +
Sbjct: 48 QVGLSKAPGNPIVTCRTSGKFAFIELRTTEEAASALNLNNIPYLGAQLRVGRPSKYTGPETPHGNWEDI 116
BLAST of mRNA_L-digitata_M_contig100319.2.1 vs. uniprot
Match: A0A7S1YH23_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YH23_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 1.380e-21 Identity = 42/79 (53.16%), Postives = 54/79 (68.35%), Query Frame = 1
Query: 4 QVNLNTSPGNPVVTCRVNNKYAFVELRSSEECTKALNLNGIPFMGQMLKIGRPSKYQGPITPASTWQRLTGQEAADNVV 240
+V L S PV RVN K+AF+E R +E KALN+NG+PF+G +LK+ RPSKY+GP+ PA TWQ LTGQ + V
Sbjct: 2 RVGLCQSHETPVTVSRVNQKFAFIECRDAEMANKALNMNGVPFLGAILKVSRPSKYEGPMIPARTWQELTGQSLPQDAV 80 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100319.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig100319.2.1 >prot_L-digitata_M_contig100319.2.1 ID=prot_L-digitata_M_contig100319.2.1|Name=mRNA_L-digitata_M_contig100319.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=89bp SQVNLNTSPGNPVVTCRVNNKYAFVELRSSEECTKALNLNGIPFMGQMLKback to top mRNA from alignment at L-digitata_M_contig100319:271..842+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig100319.2.1 ID=mRNA_L-digitata_M_contig100319.2.1|Name=mRNA_L-digitata_M_contig100319.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=572bp|location=Sequence derived from alignment at L-digitata_M_contig100319:271..842+ (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig100319:271..842+ >mRNA_L-digitata_M_contig100319.2.1 ID=mRNA_L-digitata_M_contig100319.2.1|Name=mRNA_L-digitata_M_contig100319.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=267bp|location=Sequence derived from alignment at L-digitata_M_contig100319:271..842+ (Laminaria digitata LdigPH10_18mv male)back to top |