prot_L-digitata_M_contig1002.3.1 (polypeptide) Laminaria digitata LdigPH10_18mv male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-digitata_M_contig1002.3.1
Unique Nameprot_L-digitata_M_contig1002.3.1
Typepolypeptide
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Sequence length185
Homology
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BLAST of mRNA_L-digitata_M_contig1002.3.1 vs. uniprot
Match: D8LP55_ECTSI (EsV-1-16 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP55_ECTSI)

HSP 1 Score: 201 bits (512), Expect = 5.850e-63
Identity = 96/152 (63.16%), Postives = 114/152 (75.00%), Query Frame = 0 
Query:    1 MRCAFLPIWDGKGDKHVAYIGPSQNLKPETRRHLSPIDKQQILQRQCSRCNCCGERIRLYPSANCDADHIVGVCRGGKTTLENIQLLCVQDHRAKSAREAQGASRMIDVGLEPGDTSVYIFASGTIQFPVDKRTPLEAIQNGRGLSLLTFKE 152
            M+  FLP++ G G K VAYIGPS NL+P  R+HL+   K  IL+RQ SRCN CG+RIR+YP A+CDADHI+GVCRGGKT  EN+ LLC+  HR K+  EA G  R +DV LEPGDTSVYIF  G + +PVDKRTPLEAI NG  LSLLTF +
Sbjct:    1 MKHLFLPVFSGTGSKPVAYIGPSLNLRPVARKHLTRPQKWAILERQRSRCNSCGDRIRIYPYADCDADHIIGVCRGGKTVPENMNLLCLPCHRRKTCLEAGGLPRTVDVALEPGDTSVYIFTEGVLAYPVDKRTPLEAITNGCALSLLTFNK 152
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BLAST of mRNA_L-digitata_M_contig1002.3.1 vs. uniprot
Match: D7G322_ECTSI (EsV-1-16 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G322_ECTSI)

HSP 1 Score: 196 bits (498), Expect = 6.240e-61
Identity = 89/159 (55.97%), Postives = 115/159 (72.33%), Query Frame = 0 
Query:    1 MRCAFLPIWDGKGDKHVAYIGPSQNLKPETRRHLSPIDKQQILQRQCSRCNCCGERIRLYPSANCDADHIVGVCRGGKTTLENIQLLCVQDHRAKSAREAQGASRMIDVGLEPGDTSVYIFASGTIQFPVDKRTPLEAIQNGRGLSLLTFKESRQDVYR 159
            MRC FLP++ G G   VAY+GPS NL+P  R+HL+   KQ +LQ Q SRCN CG+ I L P ANCDADH++GVCRGG+T  EN Q+LCV+ HR K+  EA G+ R ++V LEPGD++VYIF  GT+  P DKRTPLEAI +G  LS++T+K   + V +
Sbjct:    1 MRCTFLPVFGGVGQAPVAYVGPSHNLRPRARKHLTRSQKQAVLQTQRSRCNSCGDLIHLQPYANCDADHVIGVCRGGETVEENTQMLCVRCHRQKTCLEAGGSPRTVEVALEPGDSNVYIFTGGTMDLPCDKRTPLEAIGDGCALSIITYKRVNRKVVK 159
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BLAST of mRNA_L-digitata_M_contig1002.3.1 vs. uniprot
Match: Q8QNP5_ESV1K (EsV-1-16 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNP5_ESV1K)

HSP 1 Score: 187 bits (476), Expect = 1.700e-57
Identity = 91/151 (60.26%), Postives = 109/151 (72.19%), Query Frame = 0 
Query:    1 MRCAFLPIWDGKGDKHVAYIGPSQNLKPETRRHLSPIDKQQILQRQCSRCNCCGERIRLYPSANCDADHIVGVCRGGKTTLENIQLLCVQDHRAKSAREAQGASRMIDVGLEPGDTSVYIFASGTIQFPVDKRTPLEAIQNGRGLSLLTFK 151
            M   FLP++ G   K VAYIGPS NL+P  R+HL+   K  IL+RQ SRCN  G+RI +YP ANCDADHI+ VCRGGKT  EN+ LLC+  HR K+  EA G  R ++V LEPGDTSVYIF  G + FPVDKRTPLEAI +G  LSLL++K
Sbjct:    1 MTHLFLPVFSGTASKPVAYIGPSHNLRPVARKHLTRPQKWAILERQRSRCNSYGDRIHIYPYANCDADHIISVCRGGKTLPENMNLLCLPCHRRKTCLEAGGLPRTVNVALEPGDTSVYIFTEGVLAFPVDKRTPLEAIGDGCALSLLSYK 151
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig1002.3.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LP55_ECTSI5.850e-6363.16EsV-1-16 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
D7G322_ECTSI6.240e-6155.97EsV-1-16 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
Q8QNP5_ESV1K1.700e-5760.26EsV-1-16 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003615HNH nucleaseSMARTSM00507HNH_5coord: 37..93
e-value: 9.4E-7
score: 38.4
IPR003615HNH nucleaseCDDcd00085HNHccoord: 39..96
e-value: 6.43853E-10
score: 50.9331
NoneNo IPR availableGENE3D1.10.30.50coord: 23..109
e-value: 5.9E-12
score: 47.1
IPR002711HNH endonucleasePFAMPF01844HNHcoord: 50..98
e-value: 4.4E-8
score: 33.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig1002contigL-digitata_M_contig1002:3233..3787 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig1002.3.1mRNA_L-digitata_M_contig1002.3.1Laminaria digitata LdigPH10_18mv malemRNAL-digitata_M_contig1002 3233..3787 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-digitata_M_contig1002.3.1 ID=prot_L-digitata_M_contig1002.3.1|Name=mRNA_L-digitata_M_contig1002.3.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=185bp
MRCAFLPIWDGKGDKHVAYIGPSQNLKPETRRHLSPIDKQQILQRQCSRC
NCCGERIRLYPSANCDADHIVGVCRGGKTTLENIQLLCVQDHRAKSAREA
QGASRMIDVGLEPGDTSVYIFASGTIQFPVDKRTPLEAIQNGRGLSLLTF
KESRQDVYRGRLRRDGFWENVGKVCLQAANGVLV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003615HNH_nuc
IPR002711HNH